Wall clock time and date at job start Mon Mar 30 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46870 * 2 1 4 4 C 1.50707 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.39012 * 126.77307 * 270.00254 * 4 3 2 6 6 C 1.41491 * 126.02087 * 0.02562 * 5 4 3 7 7 H 1.07999 * 119.99642 * 359.97438 * 6 5 4 8 8 C 1.39736 * 119.99900 * 179.97438 * 6 5 4 9 9 N 1.30988 * 119.99967 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46845 * 90.00063 * 10 8 6 12 12 H 1.48497 * 109.47511 * 210.00224 * 10 8 6 13 13 H 1.48500 * 109.47185 * 330.00571 * 10 8 6 14 14 N 1.34844 * 107.95522 * 179.97438 * 5 4 3 15 15 N 1.28667 * 109.63426 * 359.71507 * 14 5 4 16 16 N 1.35023 * 126.76868 * 89.99926 * 4 3 2 17 17 C 1.46500 * 126.49274 * 0.02562 * 16 4 3 18 18 C 1.52997 * 109.47473 * 89.99793 * 17 16 4 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.42902 * 114.00186 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47230 * 179.97438 * 20 19 18 22 22 O 1.42902 * 109.47354 * 64.99741 * 21 20 19 23 23 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46907 * 299.99922 * 1 2 3 25 25 H 1.08995 * 109.47098 * 60.00058 * 1 2 3 26 26 H 1.09002 * 109.46907 * 240.00077 * 2 1 3 27 27 H 1.08995 * 109.47098 * 119.99942 * 2 1 3 28 28 H 1.09002 * 109.47292 * 60.00314 * 3 2 1 29 29 H 1.09005 * 109.47294 * 299.99857 * 3 2 1 30 30 H 0.97002 * 120.00018 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.47129 * 329.99536 * 17 16 4 32 32 H 1.08998 * 109.46845 * 210.00343 * 17 16 4 33 33 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 34 34 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 35 35 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 36 36 H 1.08999 * 109.46857 * 59.99535 * 20 19 18 37 37 H 1.08999 * 109.47305 * 185.00032 * 21 20 19 38 38 H 1.09004 * 109.47201 * 305.00192 * 21 20 19 39 39 H 0.96696 * 114.00693 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3787 1.4427 1.1145 6 6 3.9596 1.4423 2.4659 7 1 2.9063 1.4423 2.7045 8 6 4.9085 1.4420 3.4917 9 7 6.1860 1.4425 3.2021 10 14 4.3553 1.4422 5.2758 11 1 4.2082 0.0421 5.7486 12 1 5.3669 2.1419 6.1078 13 1 3.0508 2.1426 5.3895 14 7 5.6553 1.4421 0.6801 15 7 5.6742 1.4356 -0.6064 16 7 4.3557 1.4424 -1.0806 17 6 3.9344 1.4427 -2.4837 18 6 3.7881 2.8852 -2.9721 19 8 3.3765 2.8854 -4.3405 20 6 3.2102 4.1910 -4.8973 21 6 2.7715 4.0704 -6.3580 22 8 1.4780 3.4660 -6.4186 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.8447 1.4419 3.9142 31 1 2.9774 0.9291 -2.5758 32 1 4.6821 0.9286 -3.0877 33 1 4.7451 3.3988 -2.8800 34 1 3.0403 3.3992 -2.3681 35 1 2.4510 4.7326 -4.3330 36 1 4.1556 4.7311 -4.8456 37 1 2.7305 5.0623 -6.8082 38 1 3.4865 3.4536 -6.9025 39 1 1.1358 3.3583 -7.3165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958540702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:57 Heat of formation + Delta-G solvation = -23.446915 kcal Electronic energy + Delta-G solvation = -20636.734885 eV Core-core repulsion = 17388.162649 eV Total energy + Delta-G solvation = -3248.572236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03947 -38.31651 -36.60177 -34.66113 -33.88651 -32.73900 -30.20514 -29.68439 -28.01986 -26.41229 -24.48063 -23.05042 -22.64770 -21.16517 -20.26491 -18.92699 -17.89562 -17.21784 -16.73186 -15.77540 -15.24608 -15.06407 -14.92958 -14.39288 -14.19950 -13.85465 -13.52224 -13.28808 -12.92673 -12.70117 -12.46873 -11.81497 -11.56872 -11.41472 -11.29197 -11.19341 -11.10500 -10.98722 -10.76780 -10.54199 -10.30992 -10.26820 -10.11196 -9.69802 -9.62398 -9.27994 -8.84622 -8.44547 -7.38100 -6.34449 -4.13669 2.75532 3.14911 3.22012 3.24677 3.27177 3.99145 4.07970 4.16889 4.32837 4.84161 4.96563 5.05526 5.09987 5.34611 5.37092 5.44255 5.49116 5.51569 5.55035 5.59818 5.65139 5.80444 5.95113 6.00666 6.14869 6.26870 6.35293 6.47856 6.65797 6.85722 6.98137 7.10142 7.15848 7.39217 7.44565 7.54980 8.16793 8.45487 8.84944 9.11365 10.21636 10.62395 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.004395 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.545180 B = 6369.970363 C = 7131.447461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.014 4.014 4 C -0.111 4.111 5 C 0.154 3.846 6 C -0.449 4.449 7 H 0.081 0.919 8 C 0.073 3.927 9 N -0.777 5.777 10 Si 0.906 3.094 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.265 1.265 14 N -0.225 5.225 15 N -0.133 5.133 16 N -0.376 5.376 17 C 0.145 3.855 18 C 0.051 3.949 19 O -0.380 6.380 20 C 0.062 3.938 21 C 0.079 3.921 22 O -0.565 6.565 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.271 0.729 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 3.598 -13.653 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.054 4.054 4 C -0.242 4.242 5 C 0.024 3.976 6 C -0.485 4.485 7 H 0.099 0.901 8 C -0.146 4.146 9 N -0.404 5.404 10 Si 0.731 3.269 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.189 1.189 14 N -0.097 5.097 15 N -0.108 5.108 16 N -0.173 5.173 17 C 0.020 3.980 18 C -0.028 4.028 19 O -0.299 6.299 20 C -0.015 4.015 21 C 0.001 3.999 22 O -0.370 6.370 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.246 3.432 -13.426 15.638 hybrid contribution -1.216 0.348 0.490 1.356 sum -8.462 3.779 -12.936 15.913 Atomic orbital electron populations 1.21782 0.96578 1.00931 1.01368 1.21523 0.94401 0.97530 1.02207 1.19632 0.88290 0.96155 1.01321 1.21447 0.93239 1.22250 0.87283 1.18976 0.85856 0.99396 0.93354 1.18524 0.93865 1.48608 0.87540 0.90074 1.25779 0.94608 0.93541 1.00664 1.70019 1.00774 1.35815 1.33752 0.86368 0.79186 0.78819 0.82524 1.19825 1.20571 1.18915 1.75090 1.20194 1.14945 0.99518 1.81515 0.96637 1.25459 1.07233 1.49315 1.07004 1.56776 1.04250 1.20975 1.01645 0.95437 0.79914 1.22871 0.99502 0.98272 0.82126 1.87838 1.89199 1.27195 1.25621 1.22522 0.99782 0.85698 0.93452 1.22197 0.85135 0.96884 0.95674 1.86590 1.33523 1.84072 1.32856 0.93309 0.92747 0.93298 0.93089 0.91147 0.90467 0.93305 0.91793 0.89345 0.89087 0.92535 0.92747 0.92538 0.91816 0.92237 0.92699 0.77635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.99 5.92 -26.73 -0.16 -2.15 16 3 C -0.01 -0.27 5.08 -27.88 -0.14 -0.41 16 4 C -0.11 -2.60 6.37 -80.90 -0.51 -3.12 16 5 C 0.15 4.27 6.72 -85.02 -0.57 3.70 16 6 C -0.45 -12.28 9.11 -37.78 -0.34 -12.62 16 7 H 0.08 2.06 7.30 -52.49 -0.38 1.67 16 8 C 0.07 1.95 5.49 -17.35 -0.10 1.86 16 9 N -0.78 -22.21 11.92 55.54 0.66 -21.55 16 10 Si 0.91 19.71 29.56 -169.99 -5.02 14.69 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 14 N -0.23 -6.62 10.55 32.05 0.34 -6.28 16 15 N -0.13 -3.52 13.74 60.35 0.83 -2.69 16 16 N -0.38 -8.46 3.63 -56.17 -0.20 -8.67 16 17 C 0.15 2.52 6.52 -4.04 -0.03 2.50 16 18 C 0.05 0.80 6.26 37.16 0.23 1.03 16 19 O -0.38 -5.56 10.31 -40.08 -0.41 -5.97 16 20 C 0.06 0.71 6.32 37.16 0.23 0.94 16 21 C 0.08 0.70 7.43 37.16 0.28 0.98 16 22 O -0.57 -5.83 13.62 -40.08 -0.55 -6.37 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.46 7.56 -51.93 -0.39 1.07 16 29 H 0.05 0.82 7.84 -51.93 -0.41 0.41 16 30 H 0.27 7.13 8.30 -40.82 -0.34 6.79 16 31 H 0.09 1.42 7.78 -51.93 -0.40 1.01 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.38 1.92 9.12 45.56 0.42 2.34 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -33.91 335.39 -5.42 -39.33 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.38 Total: 1.39 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.74 Total: -8.93 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 1.63 Total: -39.19 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.96 Total: -12.35 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.91 -5.42 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.881 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds