Wall clock time and date at job start Mon Mar 30 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46870 * 2 1 4 4 C 1.50707 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.39012 * 126.77307 * 270.00254 * 4 3 2 6 6 C 1.41491 * 126.02087 * 0.02562 * 5 4 3 7 7 H 1.07999 * 119.99642 * 359.97438 * 6 5 4 8 8 C 1.39736 * 119.99900 * 179.97438 * 6 5 4 9 9 N 1.30988 * 119.99967 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46845 * 90.00063 * 10 8 6 12 12 H 1.48497 * 109.47511 * 210.00224 * 10 8 6 13 13 H 1.48500 * 109.47185 * 330.00571 * 10 8 6 14 14 N 1.34844 * 107.95522 * 179.97438 * 5 4 3 15 15 N 1.28667 * 109.63426 * 359.71507 * 14 5 4 16 16 N 1.35023 * 126.76868 * 89.99926 * 4 3 2 17 17 C 1.46500 * 126.49274 * 0.02562 * 16 4 3 18 18 C 1.52997 * 109.47473 * 89.99793 * 17 16 4 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.42902 * 114.00186 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47230 * 179.97438 * 20 19 18 22 22 O 1.42902 * 109.47354 * 64.99741 * 21 20 19 23 23 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46907 * 299.99922 * 1 2 3 25 25 H 1.08995 * 109.47098 * 60.00058 * 1 2 3 26 26 H 1.09002 * 109.46907 * 240.00077 * 2 1 3 27 27 H 1.08995 * 109.47098 * 119.99942 * 2 1 3 28 28 H 1.09002 * 109.47292 * 60.00314 * 3 2 1 29 29 H 1.09005 * 109.47294 * 299.99857 * 3 2 1 30 30 H 0.97002 * 120.00018 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.47129 * 329.99536 * 17 16 4 32 32 H 1.08998 * 109.46845 * 210.00343 * 17 16 4 33 33 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 34 34 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 35 35 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 36 36 H 1.08999 * 109.46857 * 59.99535 * 20 19 18 37 37 H 1.08999 * 109.47305 * 185.00032 * 21 20 19 38 38 H 1.09004 * 109.47201 * 305.00192 * 21 20 19 39 39 H 0.96696 * 114.00693 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3787 1.4427 1.1145 6 6 3.9596 1.4423 2.4659 7 1 2.9063 1.4423 2.7045 8 6 4.9085 1.4420 3.4917 9 7 6.1860 1.4425 3.2021 10 14 4.3553 1.4422 5.2758 11 1 4.2082 0.0421 5.7486 12 1 5.3669 2.1419 6.1078 13 1 3.0508 2.1426 5.3895 14 7 5.6553 1.4421 0.6801 15 7 5.6742 1.4356 -0.6064 16 7 4.3557 1.4424 -1.0806 17 6 3.9344 1.4427 -2.4837 18 6 3.7881 2.8852 -2.9721 19 8 3.3765 2.8854 -4.3405 20 6 3.2102 4.1910 -4.8973 21 6 2.7715 4.0704 -6.3580 22 8 1.4780 3.4660 -6.4186 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.8447 1.4419 3.9142 31 1 2.9774 0.9291 -2.5758 32 1 4.6821 0.9286 -3.0877 33 1 4.7451 3.3988 -2.8800 34 1 3.0403 3.3992 -2.3681 35 1 2.4510 4.7326 -4.3330 36 1 4.1556 4.7311 -4.8456 37 1 2.7305 5.0623 -6.8082 38 1 3.4865 3.4536 -6.9025 39 1 1.1358 3.3583 -7.3165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958540702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:57 Heat of formation + Delta-G solvation = -49.477848 kcal Electronic energy + Delta-G solvation = -20637.863671 eV Core-core repulsion = 17388.162649 eV Total energy + Delta-G solvation = -3249.701022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.96047 -39.36462 -37.43809 -36.18258 -35.65445 -34.47046 -31.61478 -31.15381 -29.43076 -27.99952 -26.33703 -24.55376 -23.46002 -22.56106 -22.18582 -20.66188 -19.07025 -18.60762 -17.93514 -16.97973 -16.84102 -16.61680 -16.39178 -15.76720 -15.38166 -15.18724 -15.05701 -14.59825 -14.34407 -13.97794 -13.83354 -13.30224 -12.95662 -12.89002 -12.72820 -12.70064 -12.58178 -12.33663 -12.07869 -12.01657 -11.97419 -11.57454 -11.52217 -11.18493 -10.97884 -10.81853 -10.71031 -10.33039 -9.37447 -8.29900 -6.18608 0.91562 1.44820 1.45180 1.59083 1.70720 2.32407 2.34455 2.79172 3.39340 3.52373 3.66787 3.84847 4.03826 4.12723 4.16069 4.17685 4.24161 4.33108 4.40624 4.52534 4.55147 4.62763 4.65197 4.73741 4.81410 4.91242 5.01808 5.10951 5.21058 5.27192 5.33117 5.53319 5.55489 5.65209 6.01134 6.37485 6.41797 6.87904 6.94163 7.09700 8.24634 8.69747 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.004395 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.545180 B = 6369.970363 C = 7131.447461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.015 4.015 4 C -0.078 4.078 5 C 0.108 3.892 6 C -0.477 4.477 7 H 0.093 0.907 8 C 0.021 3.979 9 N -0.828 5.828 10 Si 0.985 3.015 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.251 1.251 14 N -0.277 5.277 15 N -0.170 5.170 16 N -0.360 5.360 17 C 0.135 3.865 18 C 0.065 3.935 19 O -0.389 6.389 20 C 0.048 3.952 21 C 0.080 3.920 22 O -0.593 6.593 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.272 0.728 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 3.954 -14.827 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.054 4.054 4 C -0.213 4.213 5 C -0.025 4.025 6 C -0.514 4.514 7 H 0.111 0.889 8 C -0.193 4.193 9 N -0.457 5.457 10 Si 0.806 3.194 11 H -0.192 1.192 12 H -0.204 1.204 13 H -0.174 1.174 14 N -0.147 5.147 15 N -0.145 5.145 16 N -0.156 5.156 17 C 0.013 3.987 18 C -0.013 4.013 19 O -0.308 6.308 20 C -0.028 4.028 21 C 0.003 3.997 22 O -0.401 6.401 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.065 3.793 -14.692 18.208 hybrid contribution -0.476 0.253 0.567 0.782 sum -10.541 4.046 -14.125 18.083 Atomic orbital electron populations 1.21714 0.93363 1.02329 1.02440 1.21439 0.97115 0.95423 1.01147 1.19854 0.84719 0.98103 1.02738 1.22239 0.95313 1.17258 0.86465 1.19571 0.86371 1.01451 0.95059 1.18904 0.94638 1.49730 0.88099 0.88900 1.26759 0.94371 0.92649 1.05527 1.70182 1.02246 1.38017 1.35213 0.85166 0.79055 0.79017 0.76129 1.19214 1.20390 1.17403 1.75039 1.21726 1.17213 1.00701 1.81398 0.98323 1.28192 1.06590 1.49676 1.06060 1.53667 1.06168 1.21373 1.02880 0.97338 0.77144 1.22521 0.99083 0.96433 0.83289 1.87821 1.89110 1.29456 1.24417 1.22887 1.00714 0.84306 0.94871 1.22272 0.84780 0.98701 0.93968 1.86519 1.34101 1.84396 1.35128 0.91829 0.92269 0.91643 0.92937 0.93557 0.90333 0.90494 0.91786 0.87066 0.88182 0.93528 0.92822 0.92701 0.90359 0.89078 0.92207 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.91 71.98 0.71 -2.56 16 2 C -0.11 -3.53 5.92 30.59 0.18 -3.35 16 3 C -0.01 -0.51 5.08 29.85 0.15 -0.36 16 4 C -0.08 -3.63 6.37 42.26 0.27 -3.36 16 5 C 0.11 6.15 6.72 39.67 0.27 6.42 16 6 C -0.48 -26.67 9.11 23.43 0.21 -26.46 16 7 H 0.09 4.73 7.30 -2.91 -0.02 4.71 16 8 C 0.02 1.13 5.49 85.18 0.47 1.59 16 9 N -0.83 -49.47 11.92 21.80 0.26 -49.21 16 10 Si 0.98 41.14 29.56 68.60 2.03 43.17 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 12 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 14 N -0.28 -17.04 10.55 -52.52 -0.55 -17.60 16 15 N -0.17 -9.33 13.74 37.02 0.51 -8.82 16 16 N -0.36 -16.16 3.63 -331.63 -1.20 -17.36 16 17 C 0.14 4.49 6.52 86.38 0.56 5.06 16 18 C 0.07 1.96 6.26 71.98 0.45 2.41 16 19 O -0.39 -10.56 10.31 -144.34 -1.49 -12.05 16 20 C 0.05 0.99 6.32 71.98 0.45 1.44 16 21 C 0.08 1.20 7.43 71.98 0.53 1.74 16 22 O -0.59 -10.66 13.62 -144.34 -1.97 -12.62 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 2.81 7.56 -2.39 -0.02 2.79 16 29 H 0.08 2.31 7.84 -2.38 -0.02 2.29 16 30 H 0.27 15.00 8.30 -92.71 -0.77 14.23 16 31 H 0.11 3.24 7.78 -2.39 -0.02 3.22 16 32 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.40 3.02 9.12 -74.06 -0.68 2.34 16 Total: -1.00 -76.94 335.39 2.22 -74.73 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.37 Total: 17.20 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.27 Total: -17.44 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -0.99 Total: -92.98 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -3.45 Total: -24.67 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -76.94 2.22 -74.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.248 kcal (2) G-P(sol) polarization free energy of solvation -76.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds