Wall clock time and date at job start Mon Mar 30 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99556 * 2 1 4 4 C 1.53005 * 109.46974 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47008 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.46987 * 304.99605 * 5 4 3 7 7 C 1.53001 * 109.47201 * 65.00030 * 5 4 3 8 8 N 1.46499 * 109.46921 * 184.99814 * 5 4 3 9 9 N 1.40127 * 126.49392 * 299.97464 * 8 5 4 10 10 N 1.28665 * 108.93595 * 180.02562 * 9 8 5 11 11 C 1.34838 * 109.63903 * 0.02562 * 10 9 8 12 12 C 1.41489 * 126.02602 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00278 * 180.02562 * 12 11 10 14 14 C 1.39745 * 119.99562 * 0.02562 * 12 11 10 15 15 N 1.30981 * 120.00099 * 359.72499 * 14 12 11 16 16 Si 1.86803 * 119.99657 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47085 * 89.99866 * 16 14 12 18 18 H 1.48497 * 109.46789 * 209.99876 * 16 14 12 19 19 H 1.48500 * 109.46897 * 329.99843 * 16 14 12 20 20 C 1.35020 * 126.49526 * 120.29331 * 8 5 4 21 21 C 1.50701 * 126.76811 * 359.96596 * 20 8 5 22 22 O 1.42907 * 109.47072 * 90.20209 * 21 20 8 23 23 C 1.42891 * 114.00093 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47485 * 300.00019 * 1 2 3 25 25 H 1.09002 * 109.47332 * 60.00086 * 1 2 3 26 26 H 1.09003 * 109.46754 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47803 * 60.00074 * 3 2 1 28 28 H 1.08997 * 109.47568 * 299.99933 * 3 2 1 29 29 H 1.08997 * 109.47268 * 60.00054 * 4 3 2 30 30 H 1.09004 * 109.47131 * 299.99674 * 4 3 2 31 31 H 1.08994 * 109.47042 * 59.99607 * 7 5 4 32 32 H 1.08995 * 109.47124 * 179.97438 * 7 5 4 33 33 H 1.09000 * 109.46932 * 300.00028 * 7 5 4 34 34 H 0.97000 * 120.00166 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.46949 * 210.19704 * 21 20 8 36 36 H 1.09000 * 109.47321 * 330.20081 * 21 20 8 37 37 H 1.08994 * 109.47696 * 179.97438 * 23 22 21 38 38 H 1.09006 * 109.47479 * 300.00193 * 23 22 21 39 39 H 1.09003 * 109.47269 * 59.99375 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 1 3.7666 3.1547 -0.8413 7 6 3.8086 3.2956 1.3079 8 7 5.6132 2.4692 -0.1210 9 7 6.4742 1.8087 0.7656 10 7 7.6817 1.9195 0.3355 11 6 7.6910 2.6294 -0.8109 12 6 8.8343 2.9576 -1.5772 13 1 8.7291 3.5343 -2.4842 14 6 10.0996 2.5356 -1.1602 15 7 10.2277 1.8408 -0.0573 16 14 11.6090 2.9695 -2.1715 17 1 12.1613 4.2667 -1.7050 18 1 12.6348 1.9080 -2.0100 19 1 11.2308 3.0788 -3.6034 20 6 6.3800 2.9863 -1.1046 21 6 5.9074 3.7896 -2.2889 22 8 5.9093 5.1787 -1.9537 23 6 5.4758 6.0331 -3.0138 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8464 -0.8899 29 1 3.8567 0.6440 -0.8908 30 1 3.8574 0.6437 0.8892 31 1 4.1996 2.7234 2.1492 32 1 4.2522 4.2912 1.3086 33 1 2.7256 3.3799 1.3979 34 1 11.1060 1.5482 0.2323 35 1 6.5749 3.6187 -3.1335 36 1 4.8966 3.4818 -2.5566 37 1 5.5055 7.0702 -2.6799 38 1 6.1347 5.9087 -3.8733 39 1 4.4562 5.7720 -3.2971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958540854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:55 Heat of formation + Delta-G solvation = -7.329134 kcal Electronic energy + Delta-G solvation = -21027.776803 eV Core-core repulsion = 17779.903486 eV Total energy + Delta-G solvation = -3247.873317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08736 -38.13275 -37.11900 -35.64919 -33.26816 -31.28998 -30.03514 -28.58186 -27.12370 -26.41052 -25.41603 -24.17458 -23.98947 -21.70862 -19.74969 -19.03829 -17.15927 -16.31458 -16.20251 -15.88672 -15.68222 -15.24499 -14.96979 -14.69227 -14.19793 -14.12681 -13.86832 -13.16479 -12.78527 -12.36900 -12.23841 -12.05285 -11.87873 -11.62731 -11.32286 -11.14276 -11.09888 -10.97669 -10.97022 -10.83571 -10.56550 -10.23708 -9.73912 -9.71303 -9.29352 -9.20976 -8.85111 -8.47921 -7.45074 -6.38285 -4.17690 2.68849 3.17010 3.21492 3.24355 3.38595 3.84758 4.13840 4.25044 4.60701 4.86899 5.00375 5.10544 5.20004 5.21033 5.30293 5.37205 5.41969 5.48867 5.50911 5.58187 5.60478 5.71696 5.77068 5.88493 5.94183 6.00355 6.09134 6.12150 6.38914 6.44595 6.88319 7.05546 7.15453 7.41422 7.50608 7.69193 8.16937 8.42977 8.81007 9.07242 10.19906 10.57962 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.005046 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.609747 B = 5547.115966 C = 6352.390203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.126 4.126 5 C 0.172 3.828 6 H 0.087 0.913 7 C -0.159 4.159 8 N -0.366 5.366 9 N -0.110 5.110 10 N -0.230 5.230 11 C 0.172 3.828 12 C -0.443 4.443 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.771 5.771 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.133 4.133 21 C 0.168 3.832 22 O -0.386 6.386 23 C 0.031 3.969 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.273 0.727 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.123 2.926 -3.656 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.165 4.165 5 C 0.067 3.933 6 H 0.105 0.895 7 C -0.218 4.218 8 N -0.164 5.164 9 N -0.087 5.087 10 N -0.104 5.104 11 C 0.043 3.957 12 C -0.479 4.479 13 H 0.099 0.901 14 C -0.147 4.147 15 N -0.397 5.397 16 Si 0.734 3.266 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.262 4.262 21 C 0.090 3.910 22 O -0.305 6.305 23 C -0.066 4.066 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.692 1.895 -2.028 14.951 hybrid contribution 0.173 1.043 -1.681 1.986 sum -14.519 2.938 -3.709 15.270 Atomic orbital electron populations 1.22726 0.81288 1.02632 0.99833 1.87905 1.19449 1.28155 1.95389 1.22562 0.93881 0.84552 1.00212 1.21840 0.92439 0.97221 1.04955 1.20736 0.77718 0.95571 0.99284 0.89475 1.22171 1.00853 1.01401 0.97336 1.49396 1.05522 1.42045 1.19451 1.81426 0.95256 1.18008 1.14025 1.75151 1.08365 1.15886 1.10948 1.18963 0.90689 0.94530 0.91544 1.18576 0.89009 1.32157 1.08135 0.90090 1.25813 1.00237 0.93740 0.94876 1.70014 1.24686 1.26282 1.18674 0.86321 0.80930 0.78694 0.80693 1.19730 1.20457 1.18896 1.20845 0.92392 1.14038 0.98904 1.20248 0.97526 0.79407 0.93791 1.88111 1.87650 1.17163 1.37549 1.22640 0.97499 0.94991 0.91444 0.94136 0.94208 0.89737 0.92767 0.93366 0.90642 0.89651 0.91111 0.91848 0.91712 0.91617 0.91667 0.94783 0.90386 0.94317 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.13 10.70 -35.23 -0.38 -5.51 16 3 C 0.06 0.78 5.69 37.16 0.21 0.99 16 4 C -0.13 -1.93 5.32 -26.73 -0.14 -2.08 16 5 C 0.17 2.87 3.15 -67.93 -0.21 2.66 16 6 H 0.09 1.32 6.79 -51.93 -0.35 0.96 16 7 C -0.16 -2.37 9.22 37.16 0.34 -2.02 16 8 N -0.37 -8.26 3.29 -49.74 -0.16 -8.42 16 9 N -0.11 -2.89 13.62 60.35 0.82 -2.07 16 10 N -0.23 -6.80 10.55 32.05 0.34 -6.46 16 11 C 0.17 4.86 6.72 -85.02 -0.57 4.29 16 12 C -0.44 -12.33 9.11 -37.78 -0.34 -12.67 16 13 H 0.08 2.11 7.30 -52.49 -0.38 1.72 16 14 C 0.07 1.97 5.49 -17.35 -0.10 1.87 16 15 N -0.77 -22.00 11.92 55.54 0.66 -21.34 16 16 Si 0.91 19.78 29.56 -169.99 -5.02 14.75 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 20 C -0.13 -3.22 6.74 -80.90 -0.55 -3.76 16 21 C 0.17 3.31 5.83 36.01 0.21 3.52 16 22 O -0.39 -7.53 10.69 -35.23 -0.38 -7.91 16 23 C 0.03 0.43 11.01 101.05 1.11 1.55 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 34 H 0.27 7.13 8.30 -40.82 -0.34 6.80 16 35 H 0.07 1.26 7.56 -51.93 -0.39 0.87 16 36 H 0.03 0.57 7.19 -51.93 -0.37 0.20 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -33.46 330.78 -4.03 -37.49 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.97 Total: -1.26 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 1.08 Total: -4.26 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 1.66 Total: -38.29 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.75 Total: -13.42 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.46 -4.03 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.159 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds