Wall clock time and date at job start Mon Mar 30 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99556 * 2 1 4 4 C 1.53005 * 109.46974 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47008 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.46987 * 304.99605 * 5 4 3 7 7 C 1.53001 * 109.47201 * 65.00030 * 5 4 3 8 8 N 1.46499 * 109.46921 * 184.99814 * 5 4 3 9 9 N 1.40127 * 126.49392 * 299.97464 * 8 5 4 10 10 N 1.28665 * 108.93595 * 180.02562 * 9 8 5 11 11 C 1.34838 * 109.63903 * 0.02562 * 10 9 8 12 12 C 1.41489 * 126.02602 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00278 * 180.02562 * 12 11 10 14 14 C 1.39745 * 119.99562 * 0.02562 * 12 11 10 15 15 N 1.30981 * 120.00099 * 359.72499 * 14 12 11 16 16 Si 1.86803 * 119.99657 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47085 * 89.99866 * 16 14 12 18 18 H 1.48497 * 109.46789 * 209.99876 * 16 14 12 19 19 H 1.48500 * 109.46897 * 329.99843 * 16 14 12 20 20 C 1.35020 * 126.49526 * 120.29331 * 8 5 4 21 21 C 1.50701 * 126.76811 * 359.96596 * 20 8 5 22 22 O 1.42907 * 109.47072 * 90.20209 * 21 20 8 23 23 C 1.42891 * 114.00093 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47485 * 300.00019 * 1 2 3 25 25 H 1.09002 * 109.47332 * 60.00086 * 1 2 3 26 26 H 1.09003 * 109.46754 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47803 * 60.00074 * 3 2 1 28 28 H 1.08997 * 109.47568 * 299.99933 * 3 2 1 29 29 H 1.08997 * 109.47268 * 60.00054 * 4 3 2 30 30 H 1.09004 * 109.47131 * 299.99674 * 4 3 2 31 31 H 1.08994 * 109.47042 * 59.99607 * 7 5 4 32 32 H 1.08995 * 109.47124 * 179.97438 * 7 5 4 33 33 H 1.09000 * 109.46932 * 300.00028 * 7 5 4 34 34 H 0.97000 * 120.00166 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.46949 * 210.19704 * 21 20 8 36 36 H 1.09000 * 109.47321 * 330.20081 * 21 20 8 37 37 H 1.08994 * 109.47696 * 179.97438 * 23 22 21 38 38 H 1.09006 * 109.47479 * 300.00193 * 23 22 21 39 39 H 1.09003 * 109.47269 * 59.99375 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 1 3.7666 3.1547 -0.8413 7 6 3.8086 3.2956 1.3079 8 7 5.6132 2.4692 -0.1210 9 7 6.4742 1.8087 0.7656 10 7 7.6817 1.9195 0.3355 11 6 7.6910 2.6294 -0.8109 12 6 8.8343 2.9576 -1.5772 13 1 8.7291 3.5343 -2.4842 14 6 10.0996 2.5356 -1.1602 15 7 10.2277 1.8408 -0.0573 16 14 11.6090 2.9695 -2.1715 17 1 12.1613 4.2667 -1.7050 18 1 12.6348 1.9080 -2.0100 19 1 11.2308 3.0788 -3.6034 20 6 6.3800 2.9863 -1.1046 21 6 5.9074 3.7896 -2.2889 22 8 5.9093 5.1787 -1.9537 23 6 5.4758 6.0331 -3.0138 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8464 -0.8899 29 1 3.8567 0.6440 -0.8908 30 1 3.8574 0.6437 0.8892 31 1 4.1996 2.7234 2.1492 32 1 4.2522 4.2912 1.3086 33 1 2.7256 3.3799 1.3979 34 1 11.1060 1.5482 0.2323 35 1 6.5749 3.6187 -3.1335 36 1 4.8966 3.4818 -2.5566 37 1 5.5055 7.0702 -2.6799 38 1 6.1347 5.9087 -3.8733 39 1 4.4562 5.7720 -3.2971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958540854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:55 Heat of formation + Delta-G solvation = -32.521195 kcal Electronic energy + Delta-G solvation = -21028.869213 eV Core-core repulsion = 17779.903486 eV Total energy + Delta-G solvation = -3248.965726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.98209 -39.11914 -38.56387 -37.05263 -35.19463 -32.98618 -31.75750 -29.87752 -28.64847 -27.24766 -26.95756 -25.89271 -25.29239 -23.22784 -21.57962 -20.70980 -18.86179 -17.69219 -17.31883 -17.20314 -16.95107 -16.84375 -16.34192 -15.99115 -15.72441 -15.50492 -15.26129 -14.72489 -14.09619 -13.83186 -13.66718 -13.40024 -13.03823 -12.85619 -12.84261 -12.70941 -12.53116 -12.40142 -12.22701 -12.17498 -12.01088 -11.89876 -11.57240 -11.19128 -10.88236 -10.59381 -10.50440 -10.36215 -9.45490 -8.33495 -6.23444 0.84294 1.43550 1.45085 1.58477 1.85004 2.28874 2.33005 2.81216 3.14266 3.57161 3.60127 3.89860 3.95658 4.11445 4.14031 4.17403 4.23361 4.39439 4.49583 4.56722 4.57038 4.60607 4.65861 4.68982 4.76647 4.87541 4.88494 4.90510 4.94623 5.04234 5.18359 5.27185 5.49476 5.57344 6.22609 6.31368 6.37341 6.44267 6.83576 7.05238 8.22986 8.65746 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.005046 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.609747 B = 5547.115966 C = 6352.390203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.072 3.928 4 C -0.117 4.117 5 C 0.157 3.843 6 H 0.117 0.883 7 C -0.152 4.152 8 N -0.347 5.347 9 N -0.145 5.145 10 N -0.284 5.284 11 C 0.124 3.876 12 C -0.476 4.476 13 H 0.090 0.910 14 C 0.022 3.978 15 N -0.822 5.822 16 Si 0.988 3.012 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.250 1.250 20 C -0.111 4.111 21 C 0.172 3.828 22 O -0.416 6.416 23 C 0.024 3.976 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.275 0.725 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.771 4.640 -5.579 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.005 4.005 4 C -0.156 4.156 5 C 0.055 3.945 6 H 0.135 0.865 7 C -0.210 4.210 8 N -0.144 5.144 9 N -0.121 5.121 10 N -0.155 5.155 11 C -0.007 4.007 12 C -0.512 4.512 13 H 0.108 0.892 14 C -0.193 4.193 15 N -0.450 5.450 16 Si 0.809 3.191 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.174 1.174 20 C -0.244 4.244 21 C 0.094 3.906 22 O -0.335 6.335 23 C -0.071 4.071 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.412 3.598 -3.916 18.206 hybrid contribution 0.667 0.585 -1.131 1.437 sum -16.745 4.183 -5.047 17.982 Atomic orbital electron populations 1.22950 0.79031 1.03813 1.01256 1.87856 1.21920 1.28782 1.95697 1.22497 0.90825 0.84778 1.02365 1.21687 0.95480 0.95557 1.02860 1.21354 0.74274 0.97227 1.01661 0.86515 1.22139 1.03818 0.99792 0.95237 1.49928 1.07700 1.39062 1.17670 1.81300 0.95208 1.20159 1.15447 1.75090 1.09920 1.18030 1.12421 1.19576 0.92840 0.96094 0.92232 1.18924 0.89918 1.33508 1.08890 0.89234 1.26805 1.03461 0.93144 0.95879 1.70173 1.25435 1.28396 1.20982 0.85121 0.76313 0.78323 0.79319 1.19236 1.20008 1.17377 1.21679 0.91640 1.11941 0.99122 1.20293 0.99468 0.79639 0.91210 1.88018 1.88487 1.16910 1.40099 1.22942 0.99161 0.94723 0.90322 0.92718 0.92672 0.88888 0.90710 0.90906 0.92543 0.92089 0.93038 0.93046 0.86875 0.91548 0.91536 0.90910 0.88721 0.93485 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.42 -10.15 10.70 -148.98 -1.59 -11.74 16 3 C 0.07 1.50 5.69 71.98 0.41 1.91 16 4 C -0.12 -3.46 5.32 30.60 0.16 -3.29 16 5 C 0.16 4.94 3.15 44.99 0.14 5.09 16 6 H 0.12 3.03 6.79 -2.39 -0.02 3.02 16 7 C -0.15 -4.18 9.22 71.98 0.66 -3.52 16 8 N -0.35 -15.71 3.29 -311.27 -1.02 -16.73 16 9 N -0.14 -7.98 13.62 37.02 0.50 -7.47 16 10 N -0.28 -17.72 10.55 -52.52 -0.55 -18.27 16 11 C 0.12 7.30 6.72 39.67 0.27 7.56 16 12 C -0.48 -27.35 9.11 23.44 0.21 -27.14 16 13 H 0.09 4.74 7.30 -2.91 -0.02 4.71 16 14 C 0.02 1.20 5.49 85.18 0.47 1.67 16 15 N -0.82 -49.46 11.92 21.80 0.26 -49.20 16 16 Si 0.99 41.57 29.56 68.60 2.03 43.60 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 20 C -0.11 -5.37 6.74 42.26 0.28 -5.09 16 21 C 0.17 6.38 5.83 71.24 0.42 6.79 16 22 O -0.42 -15.15 10.69 -148.98 -1.59 -16.74 16 23 C 0.02 0.58 11.01 113.37 1.25 1.83 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.24 6.56 -2.39 -0.02 1.23 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 2.02 6.56 -2.39 -0.02 2.01 16 34 H 0.27 15.16 8.30 -92.71 -0.77 14.39 16 35 H 0.07 2.46 7.56 -2.39 -0.02 2.44 16 36 H 0.07 2.13 7.19 -2.39 -0.02 2.11 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -78.95 330.78 4.58 -74.36 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.03 Total: 14.77 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 5.52 Total: -12.57 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -0.81 Total: -91.68 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -3.19 Total: -28.48 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -78.95 4.58 -74.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.842 kcal (2) G-P(sol) polarization free energy of solvation -78.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds