Wall clock time and date at job start Mon Mar 30 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47477 * 2 1 4 4 H 1.09005 * 109.46760 * 304.99649 * 3 2 1 5 5 C 1.53001 * 109.47116 * 185.00154 * 3 2 1 6 6 O 1.42901 * 109.47442 * 64.99549 * 5 3 2 7 7 C 1.42896 * 114.00330 * 180.02562 * 6 5 3 8 8 N 1.46498 * 109.47690 * 65.00028 * 3 2 1 9 9 N 1.40119 * 126.49381 * 59.97056 * 8 3 2 10 10 N 1.28670 * 108.93708 * 180.02562 * 9 8 3 11 11 C 1.34842 * 109.63216 * 359.97438 * 10 9 8 12 12 C 1.41499 * 126.01703 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99610 * 185.81280 * 12 11 10 14 14 C 1.39738 * 119.99890 * 5.81125 * 12 11 10 15 15 N 1.30986 * 120.00119 * 353.67346 * 14 12 11 16 16 Si 1.86803 * 119.99737 * 173.94161 * 14 12 11 17 17 H 1.48504 * 109.46660 * 94.98266 * 16 14 12 18 18 H 1.48494 * 109.47208 * 214.98571 * 16 14 12 19 19 H 1.48497 * 109.47162 * 334.98820 * 16 14 12 20 20 C 1.35023 * 126.49138 * 240.30301 * 8 3 2 21 21 C 1.50693 * 126.77157 * 359.95623 * 20 8 3 22 22 O 1.42901 * 109.47439 * 90.20550 * 21 20 8 23 23 C 1.42898 * 114.00482 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47239 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46847 * 300.00654 * 1 2 3 26 26 H 1.08996 * 109.46821 * 59.99769 * 1 2 3 27 27 H 1.08998 * 109.47039 * 239.99137 * 2 1 3 28 28 H 1.09003 * 109.47195 * 119.99670 * 2 1 3 29 29 H 1.08997 * 109.47134 * 184.99437 * 5 3 2 30 30 H 1.09000 * 109.47003 * 304.99251 * 5 3 2 31 31 H 1.09012 * 109.46877 * 300.00124 * 7 6 5 32 32 H 1.09002 * 109.47238 * 59.99647 * 7 6 5 33 33 H 1.08995 * 109.47713 * 180.02562 * 7 6 5 34 34 H 0.97002 * 119.99480 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47157 * 210.20441 * 21 20 8 36 36 H 1.09000 * 109.47765 * 330.20527 * 21 20 8 37 37 H 1.08991 * 109.46939 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.47078 * 300.00091 * 23 22 21 39 39 H 1.09000 * 109.46924 * 60.00060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5649 1.4442 -0.1258 6 8 3.9386 0.9110 -1.3978 7 6 5.3499 0.8673 -1.6179 8 7 1.6526 2.0975 1.2517 9 7 2.0135 1.7009 2.5463 10 7 1.4883 2.5143 3.3938 11 6 0.7802 3.4565 2.7387 12 6 0.0613 4.5204 3.3332 13 1 -0.5506 5.1668 2.7216 14 6 0.1431 4.7346 4.7117 15 7 0.7832 3.8800 5.4704 16 14 -0.6668 6.2357 5.4732 17 1 -2.0189 5.8713 5.9677 18 1 0.1600 6.7230 6.6064 19 1 -0.7857 7.3062 4.4509 20 6 0.8750 3.1943 1.3768 21 6 0.2391 3.9814 0.2602 22 8 -1.0576 3.4497 -0.0191 23 6 -1.7507 4.1288 -1.0681 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9356 2.4653 -0.0368 30 1 3.9954 0.8310 0.6659 31 1 5.7580 1.8765 -1.5596 32 1 5.8171 0.2420 -0.8572 33 1 5.5510 0.4509 -2.6049 34 1 0.8396 4.0286 6.4273 35 1 0.1471 5.0258 0.5584 36 1 0.8602 3.9120 -0.6329 37 1 -2.7259 3.6657 -1.2183 38 1 -1.8841 5.1761 -0.7969 39 1 -1.1710 4.0628 -1.9888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:07 Heat of formation + Delta-G solvation = -6.626176 kcal Electronic energy + Delta-G solvation = -21549.963763 eV Core-core repulsion = 18302.120929 eV Total energy + Delta-G solvation = -3247.842834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.16906 -38.02553 -37.09520 -35.25849 -33.26705 -31.28492 -30.14844 -28.81649 -27.15472 -26.18543 -25.28304 -24.16084 -23.37024 -21.95675 -19.80713 -19.03964 -17.05254 -16.46677 -15.95960 -15.75059 -15.40502 -15.27364 -15.13548 -14.73591 -14.24547 -13.95216 -13.30498 -13.06401 -12.81947 -12.77559 -12.21095 -11.96772 -11.72661 -11.47157 -11.20819 -11.14615 -11.06499 -10.89947 -10.74039 -10.68398 -10.47643 -10.26640 -9.77038 -9.62955 -9.30293 -9.17257 -8.87624 -8.50648 -7.47843 -6.41513 -4.20094 2.64839 3.14207 3.19563 3.22632 3.26878 4.09471 4.13709 4.22791 4.61459 4.86115 5.10775 5.28963 5.29906 5.35306 5.51241 5.55319 5.56884 5.61262 5.64970 5.65932 5.74824 5.79724 5.89778 5.92568 6.00292 6.12782 6.16043 6.28255 6.52005 6.74124 6.86589 7.09174 7.13755 7.39165 7.48024 7.71043 8.13338 8.41517 8.78281 9.05007 10.15772 10.54970 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.006084 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.884922 B = 4600.817041 C = 5310.798382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.174 3.826 4 H 0.095 0.905 5 C 0.056 3.944 6 O -0.390 6.390 7 C 0.034 3.966 8 N -0.363 5.363 9 N -0.113 5.113 10 N -0.229 5.229 11 C 0.171 3.829 12 C -0.443 4.443 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.771 5.771 16 Si 0.908 3.092 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.127 4.127 21 C 0.167 3.833 22 O -0.384 6.384 23 C 0.032 3.968 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.273 0.727 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -1.664 -12.774 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C 0.069 3.931 4 H 0.112 0.888 5 C -0.022 4.022 6 O -0.308 6.308 7 C -0.063 4.063 8 N -0.162 5.162 9 N -0.090 5.090 10 N -0.102 5.102 11 C 0.042 3.958 12 C -0.479 4.479 13 H 0.100 0.900 14 C -0.146 4.146 15 N -0.397 5.397 16 Si 0.733 3.267 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.256 4.256 21 C 0.089 3.911 22 O -0.302 6.302 23 C -0.066 4.066 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.011 -2.964 -11.743 12.480 hybrid contribution -0.554 1.723 -0.330 1.840 sum 2.457 -1.242 -12.073 12.383 Atomic orbital electron populations 1.21678 0.94974 1.00886 1.02730 1.21801 0.96885 0.94671 1.02845 1.20741 0.92852 0.94940 0.84545 0.88750 1.22818 0.95409 0.98494 0.85437 1.87780 1.22811 1.84678 1.35574 1.22719 0.81567 1.00451 1.01537 1.49274 1.38855 1.21804 1.06244 1.81429 1.23133 1.21433 0.83032 1.75155 1.10315 1.02890 1.21845 1.18953 0.95904 0.94751 0.86148 1.18581 1.26027 1.10994 0.92277 0.90012 1.25813 0.94444 0.96987 0.97377 1.70026 1.31792 1.32144 1.05691 0.86320 0.79458 0.81889 0.79073 1.19797 1.20418 1.18820 1.20855 1.10343 0.98157 0.96203 1.20250 0.82359 0.95771 0.92720 1.88107 1.30433 1.57416 1.54270 1.22639 0.96845 0.97009 0.90072 0.93247 0.91870 0.92946 0.90479 0.90961 0.92895 0.91828 0.94150 0.93973 0.89686 0.91636 0.91674 0.94751 0.90391 0.94392 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.80 37.16 0.36 -2.05 16 2 C -0.12 -2.01 5.51 -26.73 -0.15 -2.15 16 3 C 0.17 3.07 2.78 -67.93 -0.19 2.88 16 4 H 0.09 1.60 6.79 -51.93 -0.35 1.24 16 5 C 0.06 0.89 5.59 37.16 0.21 1.10 16 6 O -0.39 -5.48 10.16 -35.23 -0.36 -5.84 16 7 C 0.03 0.36 11.01 101.05 1.11 1.47 16 8 N -0.36 -8.06 2.74 -49.74 -0.14 -8.20 16 9 N -0.11 -2.91 13.62 60.35 0.82 -2.09 16 10 N -0.23 -6.62 10.58 32.05 0.34 -6.28 16 11 C 0.17 4.76 6.71 -85.02 -0.57 4.19 16 12 C -0.44 -12.16 9.09 -37.78 -0.34 -12.50 16 13 H 0.08 2.11 7.39 -52.49 -0.39 1.72 16 14 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 15 N -0.77 -21.71 11.95 55.54 0.66 -21.05 16 16 Si 0.91 19.55 29.56 -169.99 -5.03 14.52 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.13 -3.01 6.74 -80.91 -0.55 -3.56 16 21 C 0.17 3.27 5.82 36.00 0.21 3.48 16 22 O -0.38 -7.42 10.69 -35.23 -0.38 -7.80 16 23 C 0.03 0.44 11.01 101.05 1.11 1.55 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.30 7.75 -51.93 -0.40 0.89 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.27 7.04 8.30 -40.82 -0.34 6.70 16 35 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 36 H 0.03 0.59 7.19 -51.93 -0.37 0.22 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -31.72 332.46 -4.04 -35.76 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.10 Total: -0.31 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 1.12 Total: -3.73 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 1.69 Total: -37.61 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.73 Total: -13.64 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.72 -4.04 -35.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.132 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds