Wall clock time and date at job start Mon Mar 30 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47477 * 2 1 4 4 H 1.09005 * 109.46760 * 304.99649 * 3 2 1 5 5 C 1.53001 * 109.47116 * 185.00154 * 3 2 1 6 6 O 1.42901 * 109.47442 * 64.99549 * 5 3 2 7 7 C 1.42896 * 114.00330 * 180.02562 * 6 5 3 8 8 N 1.46498 * 109.47690 * 65.00028 * 3 2 1 9 9 N 1.40119 * 126.49381 * 59.97056 * 8 3 2 10 10 N 1.28670 * 108.93708 * 180.02562 * 9 8 3 11 11 C 1.34842 * 109.63216 * 359.97438 * 10 9 8 12 12 C 1.41499 * 126.01703 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99610 * 185.81280 * 12 11 10 14 14 C 1.39738 * 119.99890 * 5.81125 * 12 11 10 15 15 N 1.30986 * 120.00119 * 353.67346 * 14 12 11 16 16 Si 1.86803 * 119.99737 * 173.94161 * 14 12 11 17 17 H 1.48504 * 109.46660 * 94.98266 * 16 14 12 18 18 H 1.48494 * 109.47208 * 214.98571 * 16 14 12 19 19 H 1.48497 * 109.47162 * 334.98820 * 16 14 12 20 20 C 1.35023 * 126.49138 * 240.30301 * 8 3 2 21 21 C 1.50693 * 126.77157 * 359.95623 * 20 8 3 22 22 O 1.42901 * 109.47439 * 90.20550 * 21 20 8 23 23 C 1.42898 * 114.00482 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47239 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46847 * 300.00654 * 1 2 3 26 26 H 1.08996 * 109.46821 * 59.99769 * 1 2 3 27 27 H 1.08998 * 109.47039 * 239.99137 * 2 1 3 28 28 H 1.09003 * 109.47195 * 119.99670 * 2 1 3 29 29 H 1.08997 * 109.47134 * 184.99437 * 5 3 2 30 30 H 1.09000 * 109.47003 * 304.99251 * 5 3 2 31 31 H 1.09012 * 109.46877 * 300.00124 * 7 6 5 32 32 H 1.09002 * 109.47238 * 59.99647 * 7 6 5 33 33 H 1.08995 * 109.47713 * 180.02562 * 7 6 5 34 34 H 0.97002 * 119.99480 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47157 * 210.20441 * 21 20 8 36 36 H 1.09000 * 109.47765 * 330.20527 * 21 20 8 37 37 H 1.08991 * 109.46939 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.47078 * 300.00091 * 23 22 21 39 39 H 1.09000 * 109.46924 * 60.00060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5649 1.4442 -0.1258 6 8 3.9386 0.9110 -1.3978 7 6 5.3499 0.8673 -1.6179 8 7 1.6526 2.0975 1.2517 9 7 2.0135 1.7009 2.5463 10 7 1.4883 2.5143 3.3938 11 6 0.7802 3.4565 2.7387 12 6 0.0613 4.5204 3.3332 13 1 -0.5506 5.1668 2.7216 14 6 0.1431 4.7346 4.7117 15 7 0.7832 3.8800 5.4704 16 14 -0.6668 6.2357 5.4732 17 1 -2.0189 5.8713 5.9677 18 1 0.1600 6.7230 6.6064 19 1 -0.7857 7.3062 4.4509 20 6 0.8750 3.1943 1.3768 21 6 0.2391 3.9814 0.2602 22 8 -1.0576 3.4497 -0.0191 23 6 -1.7507 4.1288 -1.0681 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9356 2.4653 -0.0368 30 1 3.9954 0.8310 0.6659 31 1 5.7580 1.8765 -1.5596 32 1 5.8171 0.2420 -0.8572 33 1 5.5510 0.4509 -2.6049 34 1 0.8396 4.0286 6.4273 35 1 0.1471 5.0258 0.5584 36 1 0.8602 3.9120 -0.6329 37 1 -2.7259 3.6657 -1.2183 38 1 -1.8841 5.1761 -0.7969 39 1 -1.1710 4.0628 -1.9888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958542028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:06 Heat of formation + Delta-G solvation = -29.452954 kcal Electronic energy + Delta-G solvation = -21550.953606 eV Core-core repulsion = 18302.120929 eV Total energy + Delta-G solvation = -3248.832678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03840 -39.23364 -38.54540 -36.72918 -35.17054 -32.99769 -31.87983 -30.25151 -28.67026 -27.27233 -26.79314 -25.88973 -24.72641 -23.59850 -21.66191 -20.73544 -18.82198 -17.89700 -17.39263 -16.97396 -16.93959 -16.69868 -16.47103 -16.25843 -15.69440 -15.53468 -14.92169 -14.46501 -14.35630 -14.04340 -13.81607 -13.36315 -12.97433 -12.93649 -12.82565 -12.68468 -12.47773 -12.30567 -12.22645 -12.09372 -12.00010 -11.92316 -11.57621 -11.16817 -10.89146 -10.75040 -10.49179 -10.36239 -9.45335 -8.34438 -6.23154 0.82210 1.44103 1.44396 1.58880 1.69510 2.28080 2.33328 2.83412 3.14692 3.49368 3.56342 3.82323 3.89734 4.10191 4.18669 4.29400 4.30713 4.37281 4.52170 4.54710 4.55323 4.60549 4.61815 4.68086 4.79806 4.83854 4.90752 4.94288 4.98803 5.12669 5.21653 5.34311 5.49237 5.56642 6.00961 6.29845 6.38368 6.42260 6.83019 7.05533 8.21371 8.65027 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.006084 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.884922 B = 4600.817041 C = 5310.798382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.161 3.839 4 H 0.112 0.888 5 C 0.070 3.930 6 O -0.394 6.394 7 C 0.025 3.975 8 N -0.341 5.341 9 N -0.142 5.142 10 N -0.280 5.280 11 C 0.127 3.873 12 C -0.475 4.475 13 H 0.089 0.911 14 C 0.024 3.976 15 N -0.821 5.821 16 Si 0.986 3.014 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.251 1.251 20 C -0.103 4.103 21 C 0.170 3.830 22 O -0.411 6.411 23 C 0.025 3.975 24 H 0.069 0.931 25 H 0.016 0.984 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.112 0.888 34 H 0.275 0.725 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -1.072 -15.798 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.058 3.942 4 H 0.130 0.870 5 C -0.008 4.008 6 O -0.313 6.313 7 C -0.071 4.071 8 N -0.139 5.139 9 N -0.118 5.118 10 N -0.151 5.151 11 C -0.004 4.004 12 C -0.511 4.511 13 H 0.107 0.893 14 C -0.191 4.191 15 N -0.449 5.449 16 Si 0.807 3.193 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.174 1.174 20 C -0.236 4.236 21 C 0.092 3.908 22 O -0.331 6.331 23 C -0.071 4.071 24 H 0.088 0.912 25 H 0.035 0.965 26 H 0.085 0.915 27 H 0.127 0.873 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.130 0.870 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.702 -2.423 -14.806 15.244 hybrid contribution -0.420 1.425 0.277 1.511 sum 2.282 -0.998 -14.529 14.741 Atomic orbital electron populations 1.21613 0.95118 1.01815 1.01005 1.21774 0.96577 0.93577 1.03503 1.21220 0.94569 0.95754 0.82662 0.87017 1.22483 0.93774 0.98181 0.86411 1.87754 1.25140 1.84440 1.33921 1.23003 0.79548 1.01304 1.03211 1.49645 1.36624 1.20641 1.06994 1.81308 1.24543 1.21877 0.84114 1.75095 1.12237 1.04213 1.23536 1.19510 0.97294 0.95632 0.87996 1.18903 1.27177 1.11772 0.93296 0.89322 1.26774 0.94738 1.00046 0.97541 1.70173 1.34143 1.34562 1.05976 0.85137 0.78146 0.77817 0.78175 1.19362 1.19963 1.17401 1.21600 1.08281 0.97269 0.96476 1.20286 0.83268 0.94829 0.92383 1.88025 1.30128 1.58436 1.56472 1.22927 0.97419 0.97320 0.89448 0.91153 0.96488 0.91497 0.87285 0.92658 0.93433 0.92855 0.93494 0.93494 0.86969 0.91521 0.91412 0.91460 0.88730 0.93452 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.80 71.98 0.71 -3.68 16 2 C -0.12 -3.57 5.51 30.59 0.17 -3.40 16 3 C 0.16 5.42 2.78 44.99 0.12 5.54 16 4 H 0.11 3.42 6.79 -2.38 -0.02 3.40 16 5 C 0.07 2.11 5.59 71.98 0.40 2.51 16 6 O -0.39 -9.92 10.16 -148.98 -1.51 -11.44 16 7 C 0.03 0.45 11.01 113.37 1.25 1.70 16 8 N -0.34 -15.25 2.74 -311.29 -0.85 -16.10 16 9 N -0.14 -7.61 13.62 37.02 0.50 -7.10 16 10 N -0.28 -17.05 10.58 -52.51 -0.56 -17.61 16 11 C 0.13 7.32 6.71 39.67 0.27 7.58 16 12 C -0.48 -26.89 9.09 23.44 0.21 -26.67 16 13 H 0.09 4.65 7.39 -2.91 -0.02 4.63 16 14 C 0.02 1.30 5.49 85.18 0.47 1.76 16 15 N -0.82 -48.55 11.95 21.80 0.26 -48.29 16 16 Si 0.99 40.99 29.56 68.60 2.03 43.02 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 20 C -0.10 -4.95 6.74 42.25 0.28 -4.66 16 21 C 0.17 6.38 5.82 71.23 0.41 6.79 16 22 O -0.41 -15.07 10.69 -148.98 -1.59 -16.66 16 23 C 0.02 0.61 11.01 113.37 1.25 1.86 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.02 0.67 7.75 -2.38 -0.02 0.65 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.11 2.71 7.69 -2.39 -0.02 2.70 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.27 14.90 8.30 -92.71 -0.77 14.13 16 35 H 0.07 2.51 7.63 -2.39 -0.02 2.49 16 36 H 0.07 2.07 7.19 -2.39 -0.02 2.05 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -73.19 332.46 4.85 -68.34 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.03 Total: 16.50 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 5.54 Total: -10.66 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -0.64 Total: -89.10 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -3.11 Total: -28.10 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -73.19 4.85 -68.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.883 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds