Wall clock time and date at job start Mon Mar 30 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99759 * 2 1 4 4 C 1.50701 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.39018 * 126.77381 * 269.99781 * 4 3 2 6 6 C 1.41488 * 126.01846 * 359.97438 * 5 4 3 7 7 H 1.07996 * 120.00210 * 0.02562 * 6 5 4 8 8 C 1.39741 * 120.00119 * 180.02562 * 6 5 4 9 9 N 1.30985 * 119.99731 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47206 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46932 * 120.00129 * 10 8 6 13 13 H 1.48498 * 109.46710 * 239.99782 * 10 8 6 14 14 N 1.34838 * 107.95737 * 179.97438 * 5 4 3 15 15 N 1.28667 * 109.63728 * 359.70893 * 14 5 4 16 16 N 1.35026 * 126.77354 * 89.99829 * 4 3 2 17 17 C 1.46506 * 126.49169 * 359.97438 * 16 4 3 18 18 C 1.52998 * 109.46593 * 90.00080 * 17 16 4 19 19 C 1.53004 * 109.46417 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46882 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47164 * 54.99936 * 20 19 18 22 22 C 1.53003 * 109.47376 * 175.00297 * 20 19 18 23 23 O 1.42903 * 109.47171 * 294.99670 * 20 19 18 24 24 H 1.08992 * 109.47265 * 300.00585 * 1 2 3 25 25 H 1.09002 * 109.46613 * 60.00745 * 1 2 3 26 26 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47976 * 59.99462 * 3 2 1 28 28 H 1.09006 * 109.47300 * 299.99287 * 3 2 1 29 29 H 0.97000 * 119.99893 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.46795 * 330.00150 * 17 16 4 31 31 H 1.08996 * 109.47177 * 210.00346 * 17 16 4 32 32 H 1.09000 * 109.47493 * 60.00497 * 18 17 16 33 33 H 1.09000 * 109.47348 * 299.99560 * 18 17 16 34 34 H 1.09000 * 109.47347 * 60.00384 * 19 18 17 35 35 H 1.08997 * 109.47714 * 299.99924 * 19 18 17 36 36 H 1.08997 * 109.47258 * 179.97438 * 22 20 19 37 37 H 1.08997 * 109.46943 * 300.00048 * 22 20 19 38 38 H 1.08999 * 109.47269 * 59.99703 * 22 20 19 39 39 H 0.96700 * 114.00311 * 300.00378 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.3417 1.1210 1.1145 6 6 3.9239 1.1548 2.4659 7 1 2.8740 1.2380 2.7046 8 6 4.8699 1.0806 3.4918 9 7 6.1433 0.9791 3.2023 10 14 4.3182 1.1245 5.2759 11 1 2.8391 1.2417 5.3339 12 1 4.7434 -0.1250 5.9564 13 1 4.9339 2.2925 5.9557 14 7 5.6142 1.0195 0.6802 15 7 5.6326 1.0113 -0.6064 16 7 4.3188 1.1224 -1.0806 17 6 3.8988 1.1549 -2.4838 18 6 3.8660 2.6042 -2.9728 19 6 3.4280 2.6381 -4.4384 20 6 3.3958 4.0874 -4.9277 21 1 4.3666 4.5513 -4.7533 22 6 3.0794 4.1135 -6.4244 23 8 2.3884 4.8084 -4.2153 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8465 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 6.7999 0.9272 3.9143 30 1 2.9045 0.7178 -2.5756 31 1 4.6039 0.5835 -3.0874 32 1 4.8603 3.0413 -2.8810 33 1 3.1608 3.1755 -2.3691 34 1 2.4338 2.2009 -4.5307 35 1 4.1334 2.0669 -5.0418 36 1 3.0560 5.1460 -6.7728 37 1 3.8477 3.5636 -6.9678 38 1 2.1086 3.6495 -6.5987 39 1 1.4968 4.4504 -4.3248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:25 Heat of formation + Delta-G solvation = -23.586351 kcal Electronic energy + Delta-G solvation = -20826.209728 eV Core-core repulsion = 17577.631446 eV Total energy + Delta-G solvation = -3248.578283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.00280 -38.15045 -37.10790 -34.88309 -33.28637 -32.07838 -30.55961 -29.74240 -27.26699 -26.16566 -25.18409 -24.14229 -22.36484 -21.37767 -20.25868 -19.15360 -17.20831 -16.50936 -16.09266 -15.85241 -15.47350 -15.22989 -14.72031 -14.60816 -14.19306 -14.15999 -13.73161 -13.10566 -12.96662 -12.37512 -12.21336 -12.02024 -11.82901 -11.79655 -11.56824 -11.13529 -11.07816 -11.01515 -10.87716 -10.72272 -10.55341 -10.27500 -10.12298 -9.71861 -9.28300 -9.21807 -8.82525 -8.44295 -7.44574 -6.37452 -4.16789 2.70070 3.16560 3.22286 3.26736 3.60685 4.14542 4.21491 4.26250 4.58536 4.62694 4.82280 4.90467 5.08637 5.33783 5.34408 5.37853 5.50029 5.58093 5.61723 5.63910 5.66807 5.73465 5.77632 5.83890 5.88892 5.91891 5.98279 6.13937 6.21254 6.44260 6.89780 7.15286 7.41548 7.50467 7.51630 7.70401 8.18218 8.44417 8.82005 9.08342 10.20265 10.58952 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.004715 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.147823 B = 5936.482363 C = 6556.874259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.169 3.831 4 C -0.129 4.129 5 C 0.170 3.830 6 C -0.443 4.443 7 H 0.082 0.918 8 C 0.072 3.928 9 N -0.772 5.772 10 Si 0.908 3.092 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.276 1.276 14 N -0.231 5.231 15 N -0.117 5.117 16 N -0.370 5.370 17 C 0.139 3.861 18 C -0.130 4.130 19 C -0.147 4.147 20 C 0.101 3.899 21 H 0.099 0.901 22 C -0.185 4.185 23 O -0.562 6.562 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.272 0.728 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 3.218 -13.339 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.091 3.909 4 C -0.259 4.259 5 C 0.041 3.959 6 C -0.479 4.479 7 H 0.100 0.900 8 C -0.147 4.147 9 N -0.398 5.398 10 Si 0.734 3.266 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.202 1.202 14 N -0.104 5.104 15 N -0.095 5.095 16 N -0.167 5.167 17 C 0.015 3.985 18 C -0.169 4.169 19 C -0.186 4.186 20 C 0.042 3.958 21 H 0.116 0.884 22 C -0.242 4.242 23 O -0.367 6.367 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.728 3.260 -13.464 15.862 hybrid contribution -1.977 -0.137 0.712 2.106 sum -9.705 3.122 -12.752 16.326 Atomic orbital electron populations 1.22637 0.82731 1.01898 0.99274 1.88104 1.18050 1.29257 1.95172 1.20244 0.87534 0.83854 0.99276 1.20860 0.91723 1.25497 0.87774 1.18988 0.85986 0.97630 0.93318 1.18614 0.94291 1.47384 0.87592 0.90031 1.25819 0.94575 0.93414 1.00891 1.70029 1.01046 1.34835 1.33847 0.86264 0.79744 0.78238 0.82394 1.18727 1.20150 1.20184 1.75129 1.19935 1.15809 0.99494 1.81443 0.97318 1.23369 1.07334 1.49375 1.06929 1.55683 1.04753 1.21367 1.00412 0.97003 0.79700 1.21935 1.03054 0.96744 0.95192 1.22254 1.02265 0.97229 0.96815 1.21941 0.92442 0.91537 0.89916 0.88354 1.22510 1.02218 1.02542 0.96958 1.86626 1.19234 1.57445 1.73358 0.94317 0.95036 0.90410 0.91752 0.94620 0.91696 0.90410 0.89996 0.91112 0.90839 0.91539 0.90760 0.91947 0.91546 0.92405 0.78119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.39 -7.63 10.69 -35.23 -0.38 -8.01 16 3 C 0.17 3.36 5.80 36.01 0.21 3.56 16 4 C -0.13 -3.16 6.74 -80.90 -0.55 -3.71 16 5 C 0.17 4.87 6.72 -85.02 -0.57 4.30 16 6 C -0.44 -12.45 9.11 -37.78 -0.34 -12.80 16 7 H 0.08 2.15 7.30 -52.49 -0.38 1.77 16 8 C 0.07 1.97 5.49 -17.35 -0.10 1.87 16 9 N -0.77 -22.19 11.92 55.54 0.66 -21.53 16 10 Si 0.91 19.91 29.56 -169.99 -5.02 14.88 16 11 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 14 N -0.23 -6.90 10.55 32.05 0.34 -6.56 16 15 N -0.12 -3.15 13.74 60.35 0.83 -2.32 16 16 N -0.37 -8.49 3.63 -56.17 -0.20 -8.69 16 17 C 0.14 2.30 6.15 -4.04 -0.02 2.28 16 18 C -0.13 -1.84 5.43 -26.73 -0.15 -1.98 16 19 C -0.15 -1.45 4.89 -26.73 -0.13 -1.58 16 20 C 0.10 0.97 3.59 -26.73 -0.10 0.87 16 21 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 22 C -0.18 -1.37 9.53 37.16 0.35 -1.01 16 23 O -0.56 -6.16 12.88 -35.23 -0.45 -6.62 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.27 7.56 -51.93 -0.39 0.88 16 28 H 0.04 0.61 7.85 -51.93 -0.41 0.20 16 29 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 30 H 0.08 1.17 7.78 -51.93 -0.40 0.77 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.14 7.82 -51.93 -0.41 0.73 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.37 2.70 9.05 45.56 0.41 3.11 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -34.58 333.97 -4.84 -39.42 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.37 Total: 1.03 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.28 Total: -6.64 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 1.63 Total: -39.11 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.83 Total: -14.62 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.58 -4.84 -39.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.836 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds