Wall clock time and date at job start Mon Mar 30 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99759 * 2 1 4 4 C 1.50701 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.39018 * 126.77381 * 269.99781 * 4 3 2 6 6 C 1.41488 * 126.01846 * 359.97438 * 5 4 3 7 7 H 1.07996 * 120.00210 * 0.02562 * 6 5 4 8 8 C 1.39741 * 120.00119 * 180.02562 * 6 5 4 9 9 N 1.30985 * 119.99731 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47206 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46932 * 120.00129 * 10 8 6 13 13 H 1.48498 * 109.46710 * 239.99782 * 10 8 6 14 14 N 1.34838 * 107.95737 * 179.97438 * 5 4 3 15 15 N 1.28667 * 109.63728 * 359.70893 * 14 5 4 16 16 N 1.35026 * 126.77354 * 89.99829 * 4 3 2 17 17 C 1.46506 * 126.49169 * 359.97438 * 16 4 3 18 18 C 1.52998 * 109.46593 * 90.00080 * 17 16 4 19 19 C 1.53004 * 109.46417 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46882 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47164 * 54.99936 * 20 19 18 22 22 C 1.53003 * 109.47376 * 175.00297 * 20 19 18 23 23 O 1.42903 * 109.47171 * 294.99670 * 20 19 18 24 24 H 1.08992 * 109.47265 * 300.00585 * 1 2 3 25 25 H 1.09002 * 109.46613 * 60.00745 * 1 2 3 26 26 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47976 * 59.99462 * 3 2 1 28 28 H 1.09006 * 109.47300 * 299.99287 * 3 2 1 29 29 H 0.97000 * 119.99893 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.46795 * 330.00150 * 17 16 4 31 31 H 1.08996 * 109.47177 * 210.00346 * 17 16 4 32 32 H 1.09000 * 109.47493 * 60.00497 * 18 17 16 33 33 H 1.09000 * 109.47348 * 299.99560 * 18 17 16 34 34 H 1.09000 * 109.47347 * 60.00384 * 19 18 17 35 35 H 1.08997 * 109.47714 * 299.99924 * 19 18 17 36 36 H 1.08997 * 109.47258 * 179.97438 * 22 20 19 37 37 H 1.08997 * 109.46943 * 300.00048 * 22 20 19 38 38 H 1.08999 * 109.47269 * 59.99703 * 22 20 19 39 39 H 0.96700 * 114.00311 * 300.00378 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.3417 1.1210 1.1145 6 6 3.9239 1.1548 2.4659 7 1 2.8740 1.2380 2.7046 8 6 4.8699 1.0806 3.4918 9 7 6.1433 0.9791 3.2023 10 14 4.3182 1.1245 5.2759 11 1 2.8391 1.2417 5.3339 12 1 4.7434 -0.1250 5.9564 13 1 4.9339 2.2925 5.9557 14 7 5.6142 1.0195 0.6802 15 7 5.6326 1.0113 -0.6064 16 7 4.3188 1.1224 -1.0806 17 6 3.8988 1.1549 -2.4838 18 6 3.8660 2.6042 -2.9728 19 6 3.4280 2.6381 -4.4384 20 6 3.3958 4.0874 -4.9277 21 1 4.3666 4.5513 -4.7533 22 6 3.0794 4.1135 -6.4244 23 8 2.3884 4.8084 -4.2153 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8465 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 6.7999 0.9272 3.9143 30 1 2.9045 0.7178 -2.5756 31 1 4.6039 0.5835 -3.0874 32 1 4.8603 3.0413 -2.8810 33 1 3.1608 3.1755 -2.3691 34 1 2.4338 2.2009 -4.5307 35 1 4.1334 2.0669 -5.0418 36 1 3.0560 5.1460 -6.7728 37 1 3.8477 3.5636 -6.9678 38 1 2.1086 3.6495 -6.5987 39 1 1.4968 4.4504 -4.3248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958542211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:24 Heat of formation + Delta-G solvation = -51.044254 kcal Electronic energy + Delta-G solvation = -20827.400392 eV Core-core repulsion = 17577.631446 eV Total energy + Delta-G solvation = -3249.768947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93993 -38.98613 -38.56926 -36.32574 -35.14043 -33.39046 -32.16771 -31.05069 -28.84264 -27.41226 -26.70564 -25.90080 -23.54671 -22.28173 -22.16272 -20.91380 -19.09470 -17.52123 -17.31730 -17.03967 -16.90061 -16.83093 -16.31209 -15.87161 -15.74962 -15.40356 -14.96998 -14.59708 -14.05927 -13.83441 -13.48249 -13.19922 -13.04536 -12.89726 -12.84269 -12.71446 -12.60131 -12.45532 -12.23752 -12.05760 -11.74022 -11.63972 -11.62060 -11.24862 -10.96010 -10.88149 -10.50345 -10.30153 -9.47458 -8.34373 -6.24656 0.82623 1.43099 1.43461 1.59809 1.93953 2.27400 2.32761 3.14499 3.48972 3.56355 3.71384 3.78779 3.99068 4.10939 4.14611 4.23875 4.34400 4.37816 4.49581 4.52170 4.60360 4.64334 4.66953 4.84348 4.89966 4.90963 4.95104 4.98506 5.19193 5.27230 5.29909 5.35221 5.47181 5.54965 6.29811 6.36654 6.42628 6.82259 6.92254 7.04386 8.20605 8.65196 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.004715 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.147823 B = 5936.482363 C = 6556.874259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.174 3.826 4 C -0.106 4.106 5 C 0.122 3.878 6 C -0.476 4.476 7 H 0.090 0.910 8 C 0.021 3.979 9 N -0.823 5.823 10 Si 0.989 3.011 11 H -0.250 1.250 12 H -0.272 1.272 13 H -0.270 1.270 14 N -0.284 5.284 15 N -0.156 5.156 16 N -0.351 5.351 17 C 0.125 3.875 18 C -0.118 4.118 19 C -0.135 4.135 20 C 0.099 3.901 21 H 0.081 0.919 22 C -0.177 4.177 23 O -0.584 6.584 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.275 0.725 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 3.184 -14.814 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.096 3.904 4 C -0.239 4.239 5 C -0.010 4.010 6 C -0.512 4.512 7 H 0.108 0.892 8 C -0.194 4.194 9 N -0.451 5.451 10 Si 0.810 3.190 11 H -0.173 1.173 12 H -0.198 1.198 13 H -0.195 1.195 14 N -0.154 5.154 15 N -0.132 5.132 16 N -0.147 5.147 17 C 0.004 3.996 18 C -0.157 4.157 19 C -0.173 4.173 20 C 0.040 3.960 21 H 0.099 0.901 22 C -0.234 4.234 23 O -0.392 6.392 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.888 3.221 -15.018 18.828 hybrid contribution -1.187 -0.129 0.919 1.506 sum -12.075 3.093 -14.100 18.819 Atomic orbital electron populations 1.22946 0.79349 1.03728 1.01106 1.88008 1.21589 1.28497 1.95527 1.20268 0.84371 0.84647 1.01120 1.21683 0.94126 1.20944 0.87180 1.19614 0.86613 0.99692 0.95086 1.18955 0.94942 1.49096 0.88252 0.89233 1.26823 0.94314 0.92420 1.05813 1.70182 1.02524 1.36928 1.35425 0.85055 0.79816 0.78297 0.75807 1.17280 1.19752 1.19530 1.75064 1.21392 1.18222 1.00718 1.81308 0.99105 1.26089 1.06688 1.49905 1.05868 1.51943 1.07010 1.21975 1.02055 0.99244 0.76367 1.21805 1.01514 0.94263 0.98142 1.22200 1.03850 0.97885 0.93401 1.21929 0.91697 0.90930 0.91420 0.90120 1.22421 1.03362 1.02753 0.94900 1.86592 1.20527 1.58239 1.73874 0.93534 0.92078 0.88683 0.91740 0.90859 0.91525 0.87686 0.88509 0.93616 0.92063 0.89059 0.89312 0.92261 0.90657 0.90833 0.76272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -15.30 10.69 -148.98 -1.59 -16.89 16 3 C 0.17 6.53 5.80 71.24 0.41 6.94 16 4 C -0.11 -5.17 6.74 42.26 0.28 -4.88 16 5 C 0.12 7.22 6.72 39.67 0.27 7.49 16 6 C -0.48 -27.55 9.11 23.43 0.21 -27.34 16 7 H 0.09 4.79 7.30 -2.91 -0.02 4.76 16 8 C 0.02 1.15 5.49 85.18 0.47 1.62 16 9 N -0.82 -49.67 11.92 21.80 0.26 -49.41 16 10 Si 0.99 41.75 29.56 68.60 2.03 43.78 16 11 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 14 N -0.28 -17.84 10.55 -52.52 -0.55 -18.40 16 15 N -0.16 -8.68 13.74 37.02 0.51 -8.17 16 16 N -0.35 -16.06 3.63 -331.62 -1.20 -17.27 16 17 C 0.12 3.86 6.15 86.38 0.53 4.39 16 18 C -0.12 -3.14 5.43 30.59 0.17 -2.97 16 19 C -0.14 -2.22 4.89 30.60 0.15 -2.07 16 20 C 0.10 1.69 3.59 30.60 0.11 1.80 16 21 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 22 C -0.18 -2.08 9.53 71.98 0.69 -1.39 16 23 O -0.58 -11.57 12.88 -148.98 -1.92 -13.49 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.43 7.56 -2.39 -0.02 2.41 16 28 H 0.07 2.19 7.85 -2.38 -0.02 2.17 16 29 H 0.27 15.16 8.30 -92.71 -0.77 14.39 16 30 H 0.11 2.75 7.78 -2.39 -0.02 2.73 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.78 7.82 -2.39 -0.02 1.76 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.39 4.45 9.05 -74.06 -0.67 3.78 16 Total: -1.00 -80.47 333.97 2.44 -78.03 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.37 Total: 16.40 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 4.54 Total: -14.58 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -0.99 Total: -93.25 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -3.51 Total: -30.38 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -80.47 2.44 -78.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.987 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds