Wall clock time and date at job start Mon Mar 30 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.39014 * 126.76961 * 269.68957 * 4 3 2 6 6 C 1.41491 * 126.02189 * 359.97438 * 5 4 3 7 7 H 1.07997 * 120.00166 * 0.02562 * 6 5 4 8 8 C 1.39741 * 119.99917 * 179.97438 * 6 5 4 9 9 N 1.30981 * 120.00101 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99794 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47192 * 120.00643 * 10 8 6 13 13 H 1.48504 * 109.47091 * 239.99850 * 10 8 6 14 14 N 1.34845 * 107.95781 * 179.83157 * 5 4 3 15 15 N 1.28671 * 109.63192 * 0.44641 * 14 5 4 16 16 N 1.35017 * 126.77139 * 89.99915 * 4 3 2 17 17 C 1.46503 * 126.49538 * 0.02653 * 16 4 3 18 18 C 1.52999 * 109.47316 * 89.99477 * 17 16 4 19 19 C 1.52997 * 109.47238 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47084 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47049 * 304.99451 * 20 19 18 22 22 C 1.53002 * 109.46824 * 184.99651 * 20 19 18 23 23 O 1.42901 * 109.47116 * 64.99662 * 20 19 18 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 0.97000 * 120.00243 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.46658 * 209.99758 * 17 16 4 31 31 H 1.08998 * 109.46759 * 329.99624 * 17 16 4 32 32 H 1.09006 * 109.47179 * 300.00245 * 18 17 16 33 33 H 1.08999 * 109.46942 * 59.99576 * 18 17 16 34 34 H 1.09006 * 109.46917 * 300.00015 * 19 18 17 35 35 H 1.08998 * 109.47116 * 59.99976 * 19 18 17 36 36 H 1.09000 * 109.46823 * 59.99685 * 22 20 19 37 37 H 1.08997 * 109.46733 * 179.97438 * 22 20 19 38 38 H 1.08996 * 109.47355 * 300.00236 * 22 20 19 39 39 H 0.96699 * 113.99763 * 60.00553 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3431 1.1265 1.1126 6 6 3.9269 1.1671 2.4643 7 1 2.8773 1.2516 2.7039 8 6 4.8741 1.0969 3.4893 9 7 6.1471 0.9939 3.1988 10 14 4.3246 1.1498 5.2739 11 1 2.8455 1.2673 5.3332 12 1 4.7496 -0.0968 5.9599 13 1 4.9422 2.3204 5.9475 14 7 5.6148 1.0196 0.6772 15 7 5.6327 1.0186 -0.6094 16 7 4.3179 1.1227 -1.0825 17 6 3.8969 1.1568 -2.4853 18 6 3.8646 2.6066 -2.9731 19 6 3.4243 2.6423 -4.4379 20 6 3.3927 4.0921 -4.9258 21 1 2.7574 4.6835 -4.2666 22 6 2.8341 4.1389 -6.3494 23 8 4.7178 4.6269 -4.9162 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 6.8046 0.9456 3.9103 30 1 4.6012 0.5856 -3.0899 31 1 2.9022 0.7205 -2.5768 32 1 3.1602 3.1779 -2.3683 33 1 4.8593 3.0429 -2.8815 34 1 4.1284 2.0709 -5.0429 35 1 2.4296 2.2061 -4.5290 36 1 1.8234 3.7309 -6.3567 37 1 2.8112 5.1718 -6.6968 38 1 3.4694 3.5474 -7.0087 39 1 5.3390 4.1488 -5.4824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:28 Heat of formation + Delta-G solvation = -23.536141 kcal Electronic energy + Delta-G solvation = -20779.399838 eV Core-core repulsion = 17530.823732 eV Total energy + Delta-G solvation = -3248.576105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.00291 -38.13819 -37.11523 -34.88029 -33.28831 -32.06883 -30.56800 -29.74016 -27.27145 -26.16730 -25.18636 -24.14639 -22.36632 -21.36990 -20.25881 -19.15573 -17.21342 -16.41929 -16.19136 -15.87534 -15.43697 -15.23592 -14.74476 -14.51680 -14.28816 -14.12661 -13.72668 -13.13337 -12.93034 -12.38481 -12.21865 -12.07507 -11.79500 -11.75339 -11.59739 -11.13808 -11.08244 -11.01259 -10.86670 -10.72657 -10.55816 -10.25813 -10.13074 -9.71766 -9.28512 -9.22483 -8.82904 -8.44233 -7.44727 -6.37639 -4.17107 2.69993 3.16330 3.22049 3.26393 3.60790 4.14249 4.22723 4.25992 4.59013 4.62200 4.82345 4.90532 5.08152 5.31949 5.35740 5.38906 5.49683 5.57825 5.60736 5.63617 5.67744 5.70950 5.75738 5.85031 5.87506 5.91718 5.97806 6.13104 6.20680 6.45594 6.89456 7.15136 7.41344 7.51370 7.53018 7.69603 8.18176 8.43993 8.81781 9.08025 10.20261 10.58735 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.004728 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.708341 B = 5921.167756 C = 6740.354576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.169 3.831 4 C -0.131 4.131 5 C 0.170 3.830 6 C -0.443 4.443 7 H 0.081 0.919 8 C 0.073 3.927 9 N -0.771 5.771 10 Si 0.908 3.092 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.276 1.276 14 N -0.231 5.231 15 N -0.116 5.116 16 N -0.370 5.370 17 C 0.139 3.861 18 C -0.130 4.130 19 C -0.147 4.147 20 C 0.101 3.899 21 H 0.097 0.903 22 C -0.185 4.185 23 O -0.561 6.561 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.273 0.727 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 3.176 -13.440 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.091 3.909 4 C -0.260 4.260 5 C 0.041 3.959 6 C -0.479 4.479 7 H 0.100 0.900 8 C -0.147 4.147 9 N -0.397 5.397 10 Si 0.734 3.266 11 H -0.187 1.187 12 H -0.201 1.201 13 H -0.202 1.202 14 N -0.104 5.104 15 N -0.093 5.093 16 N -0.167 5.167 17 C 0.015 3.985 18 C -0.169 4.169 19 C -0.186 4.186 20 C 0.042 3.958 21 H 0.115 0.885 22 C -0.242 4.242 23 O -0.367 6.367 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.136 3.278 -13.325 15.953 hybrid contribution -1.407 -0.177 0.540 1.517 sum -9.543 3.100 -12.785 16.252 Atomic orbital electron populations 1.22640 0.82731 1.01917 0.99267 1.88106 1.18049 1.29239 1.95166 1.20244 0.87558 0.83883 0.99220 1.20847 0.91716 1.25642 0.87789 1.18988 0.86006 0.97599 0.93313 1.18612 0.94290 1.47403 0.87597 0.90041 1.25817 0.94576 0.93418 1.00887 1.70026 1.01021 1.34788 1.33876 0.86267 0.79729 0.78249 0.82405 1.18737 1.20149 1.20175 1.75137 1.19954 1.15788 0.99485 1.81451 0.97220 1.23292 1.07348 1.49372 1.06873 1.55759 1.04742 1.21366 1.00388 0.96999 0.79716 1.21938 1.03501 0.96683 0.94816 1.22256 1.02322 0.97200 0.96802 1.21926 0.84206 0.93884 0.95796 0.88473 1.22512 1.01838 1.02502 0.97388 1.86623 1.20226 1.58789 1.71027 0.94317 0.95039 0.90391 0.94699 0.91742 0.91681 0.89997 0.90403 0.91604 0.90362 0.91359 0.90947 0.91611 0.91948 0.92351 0.77971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.39 -7.62 10.69 -35.23 -0.38 -7.99 16 3 C 0.17 3.35 5.80 36.01 0.21 3.55 16 4 C -0.13 -3.20 6.74 -80.90 -0.55 -3.74 16 5 C 0.17 4.87 6.72 -85.02 -0.57 4.30 16 6 C -0.44 -12.44 9.11 -37.78 -0.34 -12.79 16 7 H 0.08 2.14 7.29 -52.49 -0.38 1.76 16 8 C 0.07 1.97 5.49 -17.35 -0.10 1.87 16 9 N -0.77 -22.17 11.92 55.54 0.66 -21.51 16 10 Si 0.91 19.88 29.56 -169.99 -5.02 14.86 16 11 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 N -0.23 -6.90 10.56 32.05 0.34 -6.56 16 15 N -0.12 -3.12 13.74 60.35 0.83 -2.29 16 16 N -0.37 -8.49 3.63 -56.17 -0.20 -8.69 16 17 C 0.14 2.31 6.15 -4.04 -0.02 2.28 16 18 C -0.13 -1.84 5.43 -26.73 -0.15 -1.99 16 19 C -0.15 -1.46 4.89 -26.73 -0.13 -1.59 16 20 C 0.10 0.98 3.59 -26.73 -0.10 0.88 16 21 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.18 -1.37 9.53 37.16 0.35 -1.01 16 23 O -0.56 -6.38 12.88 -35.23 -0.45 -6.84 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.59 7.84 -51.93 -0.41 0.18 16 28 H 0.06 1.26 7.55 -51.93 -0.39 0.87 16 29 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.08 1.17 7.77 -51.93 -0.40 0.77 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.28 7.82 -51.93 -0.41 0.88 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.37 2.90 9.05 45.56 0.41 3.31 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -34.62 333.95 -4.84 -39.46 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.36 Total: 1.20 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -0.28 Total: -6.67 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 1.63 Total: -39.05 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.83 Total: -14.83 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.62 -4.84 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.924 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds