Wall clock time and date at job start Mon Mar 30 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99889 * 2 1 4 4 C 1.50708 * 109.46887 * 180.02562 * 3 2 1 5 5 C 1.39008 * 126.76958 * 270.02319 * 4 3 2 6 6 C 1.41491 * 126.02642 * 359.94513 * 5 4 3 7 7 H 1.08001 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.39735 * 120.00570 * 180.02562 * 6 5 4 9 9 N 1.30983 * 119.99644 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00090 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47312 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47217 * 119.99726 * 10 8 6 13 13 H 1.48508 * 109.46595 * 239.99534 * 10 8 6 14 14 N 1.34844 * 107.95678 * 179.97438 * 5 4 3 15 15 N 1.28665 * 109.63453 * 359.97438 * 14 5 4 16 16 N 1.35017 * 126.77074 * 89.97958 * 4 3 2 17 17 C 1.46498 * 126.49218 * 0.03205 * 16 4 3 18 18 H 1.08997 * 109.47639 * 0.02562 * 17 16 4 19 19 C 1.52999 * 109.47525 * 239.99877 * 17 16 4 20 20 C 1.53003 * 109.46767 * 120.00234 * 17 16 4 21 21 C 1.52997 * 109.47209 * 184.99818 * 20 17 16 22 22 C 1.52998 * 109.47283 * 179.97438 * 21 20 17 23 23 O 1.42902 * 109.47219 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46919 * 300.00269 * 1 2 3 25 25 H 1.08995 * 109.46992 * 59.99969 * 1 2 3 26 26 H 1.09000 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47124 * 60.00174 * 3 2 1 28 28 H 1.09000 * 109.46662 * 299.99612 * 3 2 1 29 29 H 0.96999 * 119.99853 * 180.02562 * 9 8 6 30 30 H 1.08997 * 109.47161 * 300.00903 * 19 17 16 31 31 H 1.09002 * 109.46716 * 60.00308 * 19 17 16 32 32 H 1.09000 * 109.47233 * 180.02562 * 19 17 16 33 33 H 1.09003 * 109.47581 * 304.99861 * 20 17 16 34 34 H 1.08998 * 109.47351 * 64.99720 * 20 17 16 35 35 H 1.08998 * 109.47549 * 300.00210 * 21 20 17 36 36 H 1.09008 * 109.46899 * 60.00252 * 21 20 17 37 37 H 1.08994 * 109.47515 * 300.00267 * 22 21 20 38 38 H 1.09004 * 109.47363 * 60.00663 * 22 21 20 39 39 H 0.96702 * 114.00085 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3425 1.1200 1.1125 6 6 3.9259 1.1534 2.4643 7 1 2.8762 1.2378 2.7039 8 6 4.8726 1.0782 3.4894 9 7 6.1457 0.9764 3.1988 10 14 4.3224 1.1216 5.2739 11 1 2.8434 1.2394 5.3332 12 1 4.7475 -0.1285 5.9535 13 1 4.9393 2.2889 5.9538 14 7 5.6147 1.0189 0.6772 15 7 5.6326 1.0173 -0.6094 16 7 4.3178 1.1224 -1.0825 17 6 3.8967 1.1561 -2.4853 18 1 2.8114 1.2431 -2.5369 19 6 4.3393 -0.1322 -3.1818 20 6 4.5378 2.3584 -3.1814 21 6 4.0017 2.4660 -4.6103 22 6 4.6423 3.6685 -5.3062 23 8 4.1411 3.7694 -6.6406 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 6.8029 0.9238 3.9103 30 1 5.4246 -0.2188 -3.1302 31 1 3.8825 -0.9887 -2.6859 32 1 4.0263 -0.1068 -4.2256 33 1 4.2947 3.2683 -2.6326 34 1 5.6197 2.2284 -3.2081 35 1 4.2448 1.5562 -5.1591 36 1 2.9197 2.5961 -4.5835 37 1 4.3989 4.5782 -4.7573 38 1 5.7243 3.5389 -5.3330 39 1 4.5053 4.5114 -7.1425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:30 Heat of formation + Delta-G solvation = -19.846390 kcal Electronic energy + Delta-G solvation = -20981.546793 eV Core-core repulsion = 17733.130687 eV Total energy + Delta-G solvation = -3248.416106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08127 -37.51439 -37.10885 -35.88775 -33.34841 -32.01668 -30.51830 -29.04227 -27.11394 -26.01831 -25.35589 -24.15031 -22.89737 -21.25288 -19.72637 -19.02000 -17.45397 -16.91232 -15.94755 -15.85866 -15.65037 -15.24434 -14.76761 -14.56465 -14.12696 -14.04150 -13.61179 -13.13203 -12.65767 -12.31430 -12.23974 -12.05225 -11.78969 -11.47868 -11.34177 -11.16756 -11.07972 -10.97903 -10.84532 -10.70728 -10.54555 -10.21664 -10.09510 -9.70075 -9.30011 -9.20117 -8.84978 -8.46645 -7.45174 -6.38894 -4.17985 2.69730 3.15278 3.21098 3.25353 3.51700 4.10544 4.13888 4.24862 4.61545 4.82229 4.92036 5.09186 5.21102 5.33121 5.46068 5.52103 5.56328 5.59452 5.60478 5.64865 5.73239 5.77006 5.88953 5.92755 5.97292 6.07649 6.13776 6.16719 6.40012 6.48377 6.88544 7.15631 7.41705 7.42949 7.50448 7.70237 8.17933 8.43254 8.80823 9.07169 10.19981 10.57475 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020631 B = 0.004985 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.863048 B = 5615.037699 C = 6419.599770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.168 3.832 4 C -0.131 4.131 5 C 0.171 3.829 6 C -0.443 4.443 7 H 0.081 0.919 8 C 0.073 3.927 9 N -0.771 5.771 10 Si 0.908 3.092 11 H -0.264 1.264 12 H -0.276 1.276 13 H -0.277 1.277 14 N -0.232 5.232 15 N -0.113 5.113 16 N -0.365 5.365 17 C 0.169 3.831 18 H 0.087 0.913 19 C -0.158 4.158 20 C -0.123 4.123 21 C -0.117 4.117 22 C 0.075 3.925 23 O -0.578 6.578 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.272 0.728 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.111 3.755 -11.765 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.090 3.910 4 C -0.261 4.261 5 C 0.041 3.959 6 C -0.479 4.479 7 H 0.099 0.901 8 C -0.147 4.147 9 N -0.398 5.398 10 Si 0.733 3.267 11 H -0.187 1.187 12 H -0.201 1.201 13 H -0.202 1.202 14 N -0.105 5.105 15 N -0.090 5.090 16 N -0.164 5.164 17 C 0.064 3.936 18 H 0.105 0.895 19 C -0.216 4.216 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.002 4.002 23 O -0.383 6.383 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.627 2.914 -11.867 13.453 hybrid contribution -1.226 0.806 0.896 1.719 sum -6.852 3.720 -10.971 13.459 Atomic orbital electron populations 1.22643 0.82718 1.01943 0.99269 1.88110 1.18054 1.29143 1.95161 1.20252 0.87600 0.83966 0.99176 1.20874 0.91729 1.25698 0.87769 1.18976 0.86015 0.97610 0.93259 1.18611 0.94278 1.47382 0.87611 0.90070 1.25809 0.94578 0.93423 1.00854 1.70028 1.01020 1.34862 1.33842 0.86273 0.79738 0.78242 0.82440 1.18740 1.20148 1.20205 1.75149 1.19917 1.15882 0.99525 1.81401 0.97348 1.23078 1.07200 1.49469 1.06880 1.55595 1.04406 1.20870 0.98656 0.95556 0.78505 0.89515 1.22145 1.02986 0.96832 0.99676 1.21828 1.01932 0.98302 0.94136 1.21530 1.00964 0.98143 0.94894 1.22206 0.97253 0.98257 0.82515 1.86463 1.71126 1.54515 1.26181 0.94340 0.95000 0.90376 0.91704 0.94762 0.91712 0.91341 0.92066 0.91471 0.91355 0.90357 0.90678 0.91251 0.93617 0.93431 0.77582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.39 -7.63 10.69 -35.23 -0.38 -8.00 16 3 C 0.17 3.32 5.83 36.01 0.21 3.53 16 4 C -0.13 -3.18 6.74 -80.90 -0.55 -3.73 16 5 C 0.17 4.82 6.72 -85.02 -0.57 4.24 16 6 C -0.44 -12.31 9.11 -37.78 -0.34 -12.66 16 7 H 0.08 2.12 7.30 -52.49 -0.38 1.74 16 8 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 9 N -0.77 -21.95 11.92 55.54 0.66 -21.29 16 10 Si 0.91 19.74 29.56 -169.99 -5.02 14.71 16 11 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 N -0.23 -6.80 10.55 32.05 0.34 -6.46 16 15 N -0.11 -2.94 13.62 60.35 0.82 -2.12 16 16 N -0.37 -8.20 3.29 -49.74 -0.16 -8.36 16 17 C 0.17 2.82 3.15 -67.93 -0.21 2.61 16 18 H 0.09 1.35 6.80 -51.93 -0.35 1.00 16 19 C -0.16 -2.41 9.22 37.16 0.34 -2.07 16 20 C -0.12 -1.76 4.95 -26.73 -0.13 -1.89 16 21 C -0.12 -1.35 5.34 -26.73 -0.14 -1.49 16 22 C 0.08 0.78 7.05 37.16 0.26 1.04 16 23 O -0.58 -5.95 13.66 -35.23 -0.48 -6.43 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.26 7.56 -51.93 -0.39 0.87 16 28 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 29 H 0.27 7.07 8.30 -40.82 -0.34 6.73 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.85 6.56 -51.93 -0.34 0.51 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.38 2.09 9.12 45.56 0.42 2.51 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -34.02 330.04 -4.50 -38.51 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.13 Total: 1.46 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.12 Total: -6.99 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 1.66 Total: -38.24 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.86 Total: -14.43 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.02 -4.50 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.668 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds