Wall clock time and date at job start Mon Mar 30 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99889 * 2 1 4 4 C 1.50708 * 109.46887 * 180.02562 * 3 2 1 5 5 C 1.39008 * 126.76958 * 270.02319 * 4 3 2 6 6 C 1.41491 * 126.02642 * 359.94513 * 5 4 3 7 7 H 1.08001 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.39735 * 120.00570 * 180.02562 * 6 5 4 9 9 N 1.30983 * 119.99644 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00090 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47312 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47217 * 119.99726 * 10 8 6 13 13 H 1.48508 * 109.46595 * 239.99534 * 10 8 6 14 14 N 1.34844 * 107.95678 * 179.97438 * 5 4 3 15 15 N 1.28665 * 109.63453 * 359.97438 * 14 5 4 16 16 N 1.35017 * 126.77074 * 89.97958 * 4 3 2 17 17 C 1.46498 * 126.49218 * 0.03205 * 16 4 3 18 18 H 1.08997 * 109.47639 * 0.02562 * 17 16 4 19 19 C 1.52999 * 109.47525 * 239.99877 * 17 16 4 20 20 C 1.53003 * 109.46767 * 120.00234 * 17 16 4 21 21 C 1.52997 * 109.47209 * 184.99818 * 20 17 16 22 22 C 1.52998 * 109.47283 * 179.97438 * 21 20 17 23 23 O 1.42902 * 109.47219 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46919 * 300.00269 * 1 2 3 25 25 H 1.08995 * 109.46992 * 59.99969 * 1 2 3 26 26 H 1.09000 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47124 * 60.00174 * 3 2 1 28 28 H 1.09000 * 109.46662 * 299.99612 * 3 2 1 29 29 H 0.96999 * 119.99853 * 180.02562 * 9 8 6 30 30 H 1.08997 * 109.47161 * 300.00903 * 19 17 16 31 31 H 1.09002 * 109.46716 * 60.00308 * 19 17 16 32 32 H 1.09000 * 109.47233 * 180.02562 * 19 17 16 33 33 H 1.09003 * 109.47581 * 304.99861 * 20 17 16 34 34 H 1.08998 * 109.47351 * 64.99720 * 20 17 16 35 35 H 1.08998 * 109.47549 * 300.00210 * 21 20 17 36 36 H 1.09008 * 109.46899 * 60.00252 * 21 20 17 37 37 H 1.08994 * 109.47515 * 300.00267 * 22 21 20 38 38 H 1.09004 * 109.47363 * 60.00663 * 22 21 20 39 39 H 0.96702 * 114.00085 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3425 1.1200 1.1125 6 6 3.9259 1.1534 2.4643 7 1 2.8762 1.2378 2.7039 8 6 4.8726 1.0782 3.4894 9 7 6.1457 0.9764 3.1988 10 14 4.3224 1.1216 5.2739 11 1 2.8434 1.2394 5.3332 12 1 4.7475 -0.1285 5.9535 13 1 4.9393 2.2889 5.9538 14 7 5.6147 1.0189 0.6772 15 7 5.6326 1.0173 -0.6094 16 7 4.3178 1.1224 -1.0825 17 6 3.8967 1.1561 -2.4853 18 1 2.8114 1.2431 -2.5369 19 6 4.3393 -0.1322 -3.1818 20 6 4.5378 2.3584 -3.1814 21 6 4.0017 2.4660 -4.6103 22 6 4.6423 3.6685 -5.3062 23 8 4.1411 3.7694 -6.6406 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 6.8029 0.9238 3.9103 30 1 5.4246 -0.2188 -3.1302 31 1 3.8825 -0.9887 -2.6859 32 1 4.0263 -0.1068 -4.2256 33 1 4.2947 3.2683 -2.6326 34 1 5.6197 2.2284 -3.2081 35 1 4.2448 1.5562 -5.1591 36 1 2.9197 2.5961 -4.5835 37 1 4.3989 4.5782 -4.7573 38 1 5.7243 3.5389 -5.3330 39 1 4.5053 4.5114 -7.1425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958542396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:30 Heat of formation + Delta-G solvation = -46.822439 kcal Electronic energy + Delta-G solvation = -20982.716562 eV Core-core repulsion = 17733.130687 eV Total energy + Delta-G solvation = -3249.585875 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97071 -38.58083 -38.47918 -37.09557 -35.24766 -33.50538 -32.17462 -30.63362 -28.65412 -27.16092 -26.89907 -25.89513 -24.30892 -22.54436 -21.45465 -20.69898 -18.82097 -18.16606 -17.40426 -17.30773 -16.96047 -16.72123 -16.33861 -15.93036 -15.66873 -15.35065 -14.92699 -14.62171 -13.90017 -13.83367 -13.60918 -13.40899 -13.11635 -12.89716 -12.79857 -12.69583 -12.48868 -12.41053 -12.23649 -12.07922 -11.89244 -11.76057 -11.54850 -11.19220 -10.88518 -10.85755 -10.51322 -10.32973 -9.44744 -8.33712 -6.23164 0.85429 1.43186 1.43888 1.59593 1.89606 2.28926 2.32974 3.13955 3.23622 3.57254 3.64517 3.87412 3.96782 4.09165 4.12579 4.19755 4.34840 4.39842 4.49898 4.55025 4.59675 4.64221 4.66497 4.70838 4.84239 4.89028 4.89903 4.95428 5.08429 5.15675 5.28971 5.31117 5.50317 5.58844 6.30607 6.37703 6.44571 6.83739 6.89035 7.05625 8.23783 8.65722 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020631 B = 0.004985 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.863048 B = 5615.037699 C = 6419.599770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.172 3.828 4 C -0.112 4.112 5 C 0.124 3.876 6 C -0.476 4.476 7 H 0.088 0.912 8 C 0.022 3.978 9 N -0.822 5.822 10 Si 0.988 3.012 11 H -0.251 1.251 12 H -0.273 1.273 13 H -0.270 1.270 14 N -0.285 5.285 15 N -0.144 5.144 16 N -0.345 5.345 17 C 0.151 3.849 18 H 0.110 0.890 19 C -0.151 4.151 20 C -0.111 4.111 21 C -0.109 4.109 22 C 0.076 3.924 23 O -0.592 6.592 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.275 0.725 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 4.247 -13.180 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.094 3.906 4 C -0.245 4.245 5 C -0.007 4.007 6 C -0.512 4.512 7 H 0.106 0.894 8 C -0.192 4.192 9 N -0.450 5.450 10 Si 0.809 3.191 11 H -0.174 1.174 12 H -0.199 1.199 13 H -0.195 1.195 14 N -0.155 5.155 15 N -0.120 5.120 16 N -0.142 5.142 17 C 0.050 3.950 18 H 0.128 0.872 19 C -0.209 4.209 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.002 4.002 23 O -0.400 6.400 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.306 3.416 -13.363 16.100 hybrid contribution -0.561 0.655 1.056 1.364 sum -8.867 4.070 -12.307 15.705 Atomic orbital electron populations 1.22938 0.79439 1.03700 1.01050 1.88017 1.21509 1.28572 1.95515 1.20297 0.84595 0.84676 1.01070 1.21671 0.94068 1.21478 0.87276 1.19564 0.86648 0.99595 0.94931 1.18941 0.94880 1.49070 0.88306 0.89358 1.26785 0.94323 0.92464 1.05667 1.70177 1.02456 1.36957 1.35374 0.85079 0.79772 0.78269 0.75999 1.17382 1.19878 1.19488 1.75089 1.21308 1.18288 1.00808 1.81273 0.98958 1.25349 1.06435 1.49983 1.05845 1.51935 1.06464 1.21507 1.00231 0.97617 0.75693 0.87235 1.22104 1.01870 0.95145 1.01744 1.21678 1.00985 0.96513 0.95806 1.21432 1.01382 0.99170 0.92719 1.22128 0.97345 0.97900 0.82803 1.86396 1.71571 1.55960 1.26121 0.93419 0.92267 0.88745 0.91520 0.91059 0.91561 0.92886 0.93573 0.87307 0.92169 0.91728 0.90053 0.90341 0.93046 0.93074 0.75228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.85 16 2 O -0.42 -15.52 10.69 -148.98 -1.59 -17.11 16 3 C 0.17 6.44 5.83 71.24 0.42 6.85 16 4 C -0.11 -5.41 6.74 42.26 0.28 -5.12 16 5 C 0.12 7.26 6.72 39.67 0.27 7.53 16 6 C -0.48 -27.22 9.11 23.43 0.21 -27.00 16 7 H 0.09 4.68 7.30 -2.91 -0.02 4.66 16 8 C 0.02 1.22 5.49 85.18 0.47 1.68 16 9 N -0.82 -49.04 11.92 21.79 0.26 -48.78 16 10 Si 0.99 41.39 29.56 68.60 2.03 43.42 16 11 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 N -0.28 -17.54 10.55 -52.52 -0.55 -18.09 16 15 N -0.14 -7.78 13.62 37.02 0.50 -7.27 16 16 N -0.35 -15.50 3.29 -311.28 -1.02 -16.52 16 17 C 0.15 4.79 3.15 44.99 0.14 4.93 16 18 H 0.11 3.01 6.80 -2.39 -0.02 2.99 16 19 C -0.15 -4.32 9.22 71.98 0.66 -3.66 16 20 C -0.11 -2.99 4.95 30.59 0.15 -2.83 16 21 C -0.11 -2.18 5.34 30.59 0.16 -2.02 16 22 C 0.08 1.37 7.05 71.98 0.51 1.88 16 23 O -0.59 -10.44 13.66 -148.98 -2.04 -12.47 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 2.48 7.56 -2.39 -0.02 2.46 16 28 H 0.07 2.13 7.20 -2.39 -0.02 2.12 16 29 H 0.27 14.98 8.30 -92.71 -0.77 14.21 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 2.22 6.56 -2.39 -0.02 2.20 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.54 6.56 -2.39 -0.02 1.53 16 36 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.40 3.30 9.12 -74.06 -0.68 2.63 16 Total: -1.00 -78.13 330.04 2.49 -75.64 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.38 Total: 17.10 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.52 Total: -15.91 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -0.81 Total: -90.66 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -3.63 Total: -29.58 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -78.13 2.49 -75.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.819 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds