Wall clock time and date at job start Mon Mar 30 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99553 * 2 1 4 4 C 1.50710 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.39010 * 126.77118 * 269.97377 * 4 3 2 6 6 C 1.41488 * 126.02253 * 0.03799 * 5 4 3 7 7 H 1.08000 * 120.00479 * 359.72274 * 6 5 4 8 8 C 1.39745 * 120.00123 * 179.97438 * 6 5 4 9 9 N 1.30983 * 119.99866 * 359.72068 * 8 6 5 10 10 Si 1.86798 * 119.99961 * 179.72636 * 8 6 5 11 11 H 1.48498 * 109.47416 * 59.99826 * 10 8 6 12 12 H 1.48508 * 109.46609 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46903 * 299.99411 * 10 8 6 14 14 N 1.34844 * 107.95770 * 180.29749 * 5 4 3 15 15 N 1.28674 * 109.63153 * 359.55606 * 14 5 4 16 16 N 1.35016 * 126.76933 * 90.01527 * 4 3 2 17 17 C 1.46499 * 126.49317 * 359.96914 * 16 4 3 18 18 H 1.09000 * 109.47010 * 359.97438 * 17 16 4 19 19 C 1.53003 * 109.47303 * 119.99435 * 17 16 4 20 20 C 1.53006 * 109.47001 * 239.99612 * 17 16 4 21 21 C 1.52999 * 109.46967 * 174.99697 * 20 17 16 22 22 C 1.52997 * 109.47056 * 179.97438 * 21 20 17 23 23 O 1.42894 * 109.47392 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.47055 * 300.00024 * 1 2 3 25 25 H 1.08993 * 109.47322 * 60.00210 * 1 2 3 26 26 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47215 * 60.00249 * 3 2 1 28 28 H 1.08999 * 109.47130 * 299.99600 * 3 2 1 29 29 H 0.97000 * 120.00385 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.46966 * 179.97438 * 19 17 16 31 31 H 1.08994 * 109.47573 * 300.00044 * 19 17 16 32 32 H 1.09000 * 109.46958 * 60.00127 * 19 17 16 33 33 H 1.09002 * 109.47087 * 295.00000 * 20 17 16 34 34 H 1.09000 * 109.46661 * 54.99979 * 20 17 16 35 35 H 1.08995 * 109.47817 * 300.00069 * 21 20 17 36 36 H 1.09009 * 109.47022 * 60.00346 * 21 20 17 37 37 H 1.09002 * 109.47211 * 300.00433 * 22 21 20 38 38 H 1.09003 * 109.47174 * 60.00268 * 22 21 20 39 39 H 0.96703 * 113.99989 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.3417 1.1216 1.1145 6 6 3.9239 1.1548 2.4659 7 1 2.8742 1.2419 2.7047 8 6 4.8699 1.0800 3.4918 9 7 6.1429 0.9738 3.2023 10 14 4.3188 1.1315 5.2759 11 1 3.4066 -0.0088 5.5454 12 1 5.5058 1.0370 6.1634 13 1 3.6064 2.4080 5.5372 14 7 5.6148 1.0272 0.6802 15 7 5.6332 1.0197 -0.6064 16 7 4.3187 1.1229 -1.0806 17 6 3.8987 1.1557 -2.4837 18 1 2.8132 1.2407 -2.5361 19 6 4.5390 2.3583 -3.1798 20 6 4.3431 -0.1326 -3.1793 21 6 3.7977 -0.1546 -4.6086 22 6 4.2427 -1.4425 -5.3045 23 8 3.7339 -1.4629 -6.6396 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 6.7996 0.9223 3.9143 30 1 4.2268 2.3824 -4.2239 31 1 4.2224 3.2760 -2.6843 32 1 5.6244 2.2729 -3.1274 33 1 5.4320 -0.1745 -3.2052 34 1 3.9593 -0.9927 -2.6307 35 1 2.7089 -0.1128 -4.5828 36 1 4.1815 0.7056 -5.1573 37 1 5.3316 -1.4839 -5.3303 38 1 3.8593 -2.3029 -4.7560 39 1 3.9773 -2.2530 -7.1412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:33 Heat of formation + Delta-G solvation = -19.845461 kcal Electronic energy + Delta-G solvation = -21032.003251 eV Core-core repulsion = 17783.587186 eV Total energy + Delta-G solvation = -3248.416065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07758 -37.48633 -37.10987 -35.87351 -33.34450 -32.00909 -30.50855 -29.05143 -27.11543 -26.01603 -25.34500 -24.14799 -22.88268 -21.23258 -19.72183 -19.01830 -17.42980 -16.90599 -15.91415 -15.86672 -15.63802 -15.24191 -14.77239 -14.52758 -14.12917 -14.07274 -13.58167 -13.12769 -12.65517 -12.35386 -12.20452 -12.04289 -11.76772 -11.49444 -11.33941 -11.12702 -11.08122 -10.99093 -10.84742 -10.69437 -10.53468 -10.23516 -10.06378 -9.72390 -9.27883 -9.20312 -8.84701 -8.46384 -7.45112 -6.38529 -4.17868 2.70137 3.17883 3.20461 3.22614 3.53817 4.10011 4.13509 4.26645 4.62002 4.85039 4.94909 5.11215 5.23731 5.33470 5.46830 5.52361 5.57611 5.59749 5.61694 5.65792 5.73517 5.77622 5.88864 5.93503 5.97128 6.04699 6.14591 6.19676 6.42007 6.46150 6.88399 7.15798 7.41936 7.45470 7.50640 7.69937 8.18101 8.42437 8.81003 9.07003 10.20117 10.57731 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.004992 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.160897 B = 5607.459771 C = 6312.717136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.168 3.832 4 C -0.132 4.132 5 C 0.171 3.829 6 C -0.444 4.444 7 H 0.080 0.920 8 C 0.073 3.927 9 N -0.772 5.772 10 Si 0.908 3.092 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.268 1.268 14 N -0.232 5.232 15 N -0.113 5.113 16 N -0.365 5.365 17 C 0.168 3.832 18 H 0.087 0.913 19 C -0.160 4.160 20 C -0.122 4.122 21 C -0.116 4.116 22 C 0.075 3.925 23 O -0.578 6.578 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.273 0.727 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 -1.636 -11.742 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.090 3.910 4 C -0.261 4.261 5 C 0.042 3.958 6 C -0.480 4.480 7 H 0.098 0.902 8 C -0.146 4.146 9 N -0.398 5.398 10 Si 0.733 3.267 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.193 1.193 14 N -0.105 5.105 15 N -0.090 5.090 16 N -0.164 5.164 17 C 0.064 3.936 18 H 0.105 0.895 19 C -0.218 4.218 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.002 4.002 23 O -0.383 6.383 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.922 -1.347 -11.840 13.307 hybrid contribution -1.338 -0.304 0.897 1.640 sum -7.260 -1.651 -10.943 13.236 Atomic orbital electron populations 1.22642 0.82729 1.01926 0.99275 1.88109 1.18044 1.29158 1.95164 1.20254 0.87605 0.83950 0.99191 1.20869 0.91708 1.25761 0.87778 1.18959 0.86009 0.97603 0.93222 1.18536 0.94235 1.47546 0.87638 0.90166 1.25805 0.94572 0.93422 1.00831 1.70005 1.01036 1.34662 1.34052 0.86389 0.78760 0.79483 0.82040 1.19236 1.20542 1.19296 1.75153 1.19875 1.15924 0.99541 1.81402 0.97370 1.23087 1.07169 1.49466 1.06863 1.55617 1.04407 1.20873 0.98802 0.95428 0.78498 0.89519 1.22175 1.02464 0.97364 0.99780 1.21801 1.02334 0.97832 0.94098 1.21524 1.01692 0.97354 0.94876 1.22206 0.97339 0.98228 0.82462 1.86457 1.78692 1.47016 1.26134 0.94336 0.94998 0.90398 0.91713 0.94741 0.91593 0.91374 0.92312 0.91220 0.90491 0.91122 0.91237 0.90802 0.93471 0.93555 0.77604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.39 -7.59 10.69 -35.23 -0.38 -7.97 16 3 C 0.17 3.32 5.83 36.01 0.21 3.53 16 4 C -0.13 -3.19 6.74 -80.90 -0.55 -3.74 16 5 C 0.17 4.83 6.72 -85.02 -0.57 4.26 16 6 C -0.44 -12.33 9.11 -37.78 -0.34 -12.68 16 7 H 0.08 2.08 7.30 -52.49 -0.38 1.70 16 8 C 0.07 1.97 5.49 -17.35 -0.10 1.88 16 9 N -0.77 -21.96 11.92 55.54 0.66 -21.29 16 10 Si 0.91 19.73 29.56 -169.99 -5.02 14.71 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 14 N -0.23 -6.81 10.56 32.05 0.34 -6.47 16 15 N -0.11 -2.95 13.62 60.35 0.82 -2.12 16 16 N -0.37 -8.20 3.29 -49.73 -0.16 -8.37 16 17 C 0.17 2.82 3.15 -67.93 -0.21 2.61 16 18 H 0.09 1.35 6.80 -51.93 -0.35 1.00 16 19 C -0.16 -2.32 9.22 37.16 0.34 -1.98 16 20 C -0.12 -1.82 4.95 -26.73 -0.13 -1.95 16 21 C -0.12 -1.39 5.34 -26.73 -0.14 -1.53 16 22 C 0.08 0.81 7.05 37.16 0.26 1.08 16 23 O -0.58 -6.14 13.66 -35.23 -0.48 -6.62 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.26 7.56 -51.93 -0.39 0.87 16 28 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 29 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 30 H 0.07 0.78 6.56 -51.93 -0.34 0.44 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.84 6.57 -51.92 -0.34 0.50 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.38 2.22 9.12 45.56 0.42 2.63 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -33.91 330.04 -4.50 -38.41 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.13 Total: 1.73 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.12 Total: -6.98 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 1.66 Total: -38.25 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.86 Total: -14.59 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.91 -4.50 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.565 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds