Wall clock time and date at job start Mon Mar 30 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 C 1.39009 * 126.77315 * 269.69170 * 5 4 3 7 7 C 1.41495 * 126.02132 * 359.97438 * 6 5 4 8 8 H 1.08002 * 119.99622 * 0.02562 * 7 6 5 9 9 C 1.39733 * 119.99978 * 179.97438 * 7 6 5 10 10 N 1.30988 * 120.00275 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00035 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47003 * 60.00062 * 11 9 7 13 13 H 1.48499 * 109.47308 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46909 * 300.00580 * 11 9 7 15 15 N 1.34846 * 107.95870 * 179.83134 * 6 5 4 16 16 N 1.28674 * 109.63417 * 0.43749 * 15 6 5 17 17 N 1.35021 * 126.77302 * 89.99922 * 5 4 3 18 18 C 1.46504 * 126.48920 * 0.02562 * 17 5 4 19 19 C 1.52992 * 109.47293 * 90.00168 * 18 17 5 20 20 C 1.52995 * 109.47466 * 59.99550 * 19 18 17 21 21 C 1.53003 * 109.47234 * 179.97438 * 19 18 17 22 22 O 1.42903 * 109.47095 * 299.99677 * 19 18 17 23 23 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 27 27 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 30 30 H 0.97005 * 119.99868 * 179.97438 * 10 9 7 31 31 H 1.09006 * 109.46910 * 210.00269 * 18 17 5 32 32 H 1.09000 * 109.47349 * 329.99578 * 18 17 5 33 33 H 1.09009 * 109.47105 * 60.00061 * 20 19 18 34 34 H 1.08999 * 109.47670 * 179.97438 * 20 19 18 35 35 H 1.08998 * 109.47117 * 300.00247 * 20 19 18 36 36 H 1.09001 * 109.47056 * 59.99977 * 21 19 18 37 37 H 1.09004 * 109.46967 * 179.97438 * 21 19 18 38 38 H 1.08997 * 109.46979 * 299.99988 * 21 19 18 39 39 H 0.96696 * 114.00249 * 300.00042 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4921 3.3197 -1.1131 7 6 4.3284 2.9351 -2.4649 8 1 3.9011 1.9726 -2.7045 9 6 4.7187 3.8009 -3.4899 10 7 5.2365 4.9685 -3.1993 11 14 4.5020 3.2934 -5.2745 12 1 3.0640 3.0410 -5.5462 13 1 4.9904 4.3800 -6.1610 14 1 5.2797 2.0554 -5.5350 15 7 5.0059 4.4880 -0.6777 16 7 5.0139 4.5040 0.6089 17 7 4.4777 3.2990 1.0819 18 6 4.3070 2.9125 2.4847 19 6 5.5655 2.1917 2.9718 20 6 6.7704 3.1257 2.8431 21 6 5.3876 1.7886 4.4370 22 8 5.7822 1.0228 2.1787 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.8575 0.6435 0.8891 29 1 3.8568 0.6439 -0.8908 30 1 5.5078 5.5694 -3.9109 31 1 4.1418 3.8040 3.0896 32 1 3.4486 2.2470 2.5764 33 1 6.6052 4.0173 3.4481 34 1 7.6670 2.6124 3.1906 35 1 6.8974 3.4132 1.7994 36 1 4.5291 1.1232 4.5291 37 1 6.2841 1.2746 4.7839 38 1 5.2226 2.6803 5.0416 39 1 5.0566 0.3845 2.2125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:14 Heat of formation + Delta-G solvation = -15.737278 kcal Electronic energy + Delta-G solvation = -21680.308403 eV Core-core repulsion = 18432.070482 eV Total energy + Delta-G solvation = -3248.237921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.16918 -37.97669 -37.56145 -33.65501 -32.98783 -32.55123 -30.83635 -28.47607 -27.23276 -26.61695 -25.91874 -24.61557 -22.59569 -20.72296 -20.19417 -18.90548 -17.41338 -16.42920 -15.99760 -15.71973 -15.25506 -15.02439 -14.81510 -14.62137 -14.36977 -13.35166 -13.17980 -12.82653 -12.76010 -12.31046 -12.27283 -12.00730 -11.77319 -11.65252 -11.50904 -11.19715 -11.11524 -11.00454 -10.90005 -10.57364 -10.53759 -10.27060 -10.05956 -9.71563 -9.38618 -9.20130 -8.83033 -8.33745 -7.36973 -6.33683 -4.12777 2.79393 3.20002 3.22895 3.25084 3.56337 4.10024 4.16822 4.34837 4.39051 4.81521 4.92405 5.04895 5.31594 5.35966 5.43626 5.52627 5.56086 5.58644 5.63405 5.71249 5.81299 5.86167 5.86786 5.94075 6.07789 6.13294 6.18135 6.34446 6.60739 6.62558 6.94755 7.15707 7.42232 7.45085 7.55507 7.83766 8.18059 8.46159 8.85751 9.12079 10.23986 10.62940 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.007493 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.469097 B = 3736.157595 C = 5195.529813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.065 3.935 4 C -0.005 4.005 5 C -0.105 4.105 6 C 0.158 3.842 7 C -0.450 4.450 8 H 0.080 0.920 9 C 0.074 3.926 10 N -0.776 5.776 11 Si 0.905 3.095 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.268 1.268 15 N -0.229 5.229 16 N -0.129 5.129 17 N -0.366 5.366 18 C 0.111 3.889 19 C 0.113 3.887 20 C -0.135 4.135 21 C -0.175 4.175 22 O -0.545 6.545 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.272 0.728 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -7.585 10.621 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.012 4.012 4 C -0.045 4.045 5 C -0.236 4.236 6 C 0.028 3.972 7 C -0.486 4.486 8 H 0.098 0.902 9 C -0.145 4.145 10 N -0.403 5.403 11 Si 0.730 3.270 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.193 1.193 15 N -0.101 5.101 16 N -0.105 5.105 17 N -0.161 5.161 18 C -0.014 4.014 19 C 0.070 3.930 20 C -0.193 4.193 21 C -0.233 4.233 22 O -0.351 6.351 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.944 -5.817 10.796 12.882 hybrid contribution -1.363 -1.207 -0.781 1.981 sum -5.307 -7.024 10.015 13.334 Atomic orbital electron populations 1.22666 0.81847 1.02032 0.99799 1.87827 1.19062 1.29163 1.95452 1.22722 0.94860 0.83386 1.00258 1.19385 0.90694 0.91797 1.02600 1.20945 1.17673 0.97523 0.87486 1.18934 0.96910 0.88124 0.93246 1.18506 1.39701 1.02758 0.87652 0.90166 1.25765 0.93693 0.94435 1.00624 1.70009 1.29822 1.06577 1.33859 0.86440 0.79286 0.78870 0.82369 1.19379 1.20648 1.19269 1.75097 1.16069 1.19398 0.99517 1.81471 1.20385 1.01381 1.07245 1.49227 1.47902 1.14889 1.04132 1.22108 0.97707 1.00441 0.81109 1.21630 0.95655 0.86401 0.89286 1.21689 0.95747 0.97388 1.04441 1.22451 1.02499 1.02146 0.96199 1.86716 1.46814 1.30925 1.70663 0.94651 0.94129 0.90133 0.92271 0.94552 0.92530 0.89618 0.91749 0.89125 0.90282 0.91401 0.92545 0.90559 0.92330 0.91425 0.91426 0.78332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.40 -6.22 10.70 -35.23 -0.38 -6.60 16 3 C 0.06 1.10 5.92 37.16 0.22 1.32 16 4 C -0.01 -0.09 5.40 -27.89 -0.15 -0.24 16 5 C -0.11 -2.40 6.02 -80.91 -0.49 -2.89 16 6 C 0.16 4.34 6.72 -85.02 -0.57 3.76 16 7 C -0.45 -12.33 9.11 -37.78 -0.34 -12.68 16 8 H 0.08 2.05 7.29 -52.49 -0.38 1.67 16 9 C 0.07 1.98 5.49 -17.35 -0.10 1.89 16 10 N -0.78 -22.16 11.92 55.54 0.66 -21.50 16 11 Si 0.91 19.87 29.56 -169.99 -5.02 14.84 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 N -0.23 -6.62 10.56 32.05 0.34 -6.28 16 16 N -0.13 -3.30 12.71 60.35 0.77 -2.53 16 17 N -0.37 -7.82 3.00 -56.17 -0.17 -7.99 16 18 C 0.11 1.73 5.27 -4.04 -0.02 1.71 16 19 C 0.11 1.60 1.17 -90.62 -0.11 1.50 16 20 C -0.14 -2.16 8.60 37.16 0.32 -1.84 16 21 C -0.17 -1.79 8.82 37.16 0.33 -1.46 16 22 O -0.54 -8.64 11.91 -35.23 -0.42 -9.06 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.91 5.23 -51.93 -0.27 0.63 16 29 H 0.09 1.69 7.55 -51.93 -0.39 1.30 16 30 H 0.27 7.16 8.30 -40.82 -0.34 6.82 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.06 7.77 -51.93 -0.40 0.66 16 33 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.56 6.81 -51.93 -0.35 1.21 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.37 4.62 7.16 45.56 0.33 4.95 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -32.90 324.88 -4.38 -37.29 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.26 Total: 4.35 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 0.20 Total: -7.41 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 1.60 Total: -38.30 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.80 Total: -15.66 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.90 -4.38 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.550 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds