Wall clock time and date at job start Mon Mar 30 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 C 1.39009 * 126.77315 * 269.69170 * 5 4 3 7 7 C 1.41495 * 126.02132 * 359.97438 * 6 5 4 8 8 H 1.08002 * 119.99622 * 0.02562 * 7 6 5 9 9 C 1.39733 * 119.99978 * 179.97438 * 7 6 5 10 10 N 1.30988 * 120.00275 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00035 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47003 * 60.00062 * 11 9 7 13 13 H 1.48499 * 109.47308 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46909 * 300.00580 * 11 9 7 15 15 N 1.34846 * 107.95870 * 179.83134 * 6 5 4 16 16 N 1.28674 * 109.63417 * 0.43749 * 15 6 5 17 17 N 1.35021 * 126.77302 * 89.99922 * 5 4 3 18 18 C 1.46504 * 126.48920 * 0.02562 * 17 5 4 19 19 C 1.52992 * 109.47293 * 90.00168 * 18 17 5 20 20 C 1.52995 * 109.47466 * 59.99550 * 19 18 17 21 21 C 1.53003 * 109.47234 * 179.97438 * 19 18 17 22 22 O 1.42903 * 109.47095 * 299.99677 * 19 18 17 23 23 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 27 27 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 30 30 H 0.97005 * 119.99868 * 179.97438 * 10 9 7 31 31 H 1.09006 * 109.46910 * 210.00269 * 18 17 5 32 32 H 1.09000 * 109.47349 * 329.99578 * 18 17 5 33 33 H 1.09009 * 109.47105 * 60.00061 * 20 19 18 34 34 H 1.08999 * 109.47670 * 179.97438 * 20 19 18 35 35 H 1.08998 * 109.47117 * 300.00247 * 20 19 18 36 36 H 1.09001 * 109.47056 * 59.99977 * 21 19 18 37 37 H 1.09004 * 109.46967 * 179.97438 * 21 19 18 38 38 H 1.08997 * 109.46979 * 299.99988 * 21 19 18 39 39 H 0.96696 * 114.00249 * 300.00042 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4921 3.3197 -1.1131 7 6 4.3284 2.9351 -2.4649 8 1 3.9011 1.9726 -2.7045 9 6 4.7187 3.8009 -3.4899 10 7 5.2365 4.9685 -3.1993 11 14 4.5020 3.2934 -5.2745 12 1 3.0640 3.0410 -5.5462 13 1 4.9904 4.3800 -6.1610 14 1 5.2797 2.0554 -5.5350 15 7 5.0059 4.4880 -0.6777 16 7 5.0139 4.5040 0.6089 17 7 4.4777 3.2990 1.0819 18 6 4.3070 2.9125 2.4847 19 6 5.5655 2.1917 2.9718 20 6 6.7704 3.1257 2.8431 21 6 5.3876 1.7886 4.4370 22 8 5.7822 1.0228 2.1787 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.8575 0.6435 0.8891 29 1 3.8568 0.6439 -0.8908 30 1 5.5078 5.5694 -3.9109 31 1 4.1418 3.8040 3.0896 32 1 3.4486 2.2470 2.5764 33 1 6.6052 4.0173 3.4481 34 1 7.6670 2.6124 3.1906 35 1 6.8974 3.4132 1.7994 36 1 4.5291 1.1232 4.5291 37 1 6.2841 1.2746 4.7839 38 1 5.2226 2.6803 5.0416 39 1 5.0566 0.3845 2.2125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:14 Heat of formation + Delta-G solvation = -41.515029 kcal Electronic energy + Delta-G solvation = -21681.426210 eV Core-core repulsion = 18432.070482 eV Total energy + Delta-G solvation = -3249.355728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97912 -39.26058 -38.78204 -35.46471 -34.67542 -33.97702 -32.35132 -30.20900 -28.33932 -28.01070 -27.11559 -26.43655 -24.08238 -22.39355 -21.72496 -20.51639 -19.18098 -17.90280 -17.26056 -17.00611 -16.79647 -16.58246 -16.18197 -15.85986 -15.73986 -14.88991 -14.76314 -14.40993 -14.17179 -13.57347 -13.47663 -13.14698 -13.05081 -12.86955 -12.84728 -12.79240 -12.66880 -12.64391 -12.20899 -12.09759 -12.00335 -11.88204 -11.60960 -11.36195 -11.03827 -10.75169 -10.56545 -10.06635 -9.32528 -8.28958 -6.16498 1.00166 1.42959 1.46156 1.55297 1.98309 2.34183 2.34854 2.90515 3.25251 3.55060 3.65134 3.70819 4.00272 4.06648 4.24898 4.26473 4.29871 4.44328 4.53085 4.57570 4.66059 4.71650 4.79536 4.82900 4.87748 4.89895 4.95810 5.07279 5.11979 5.22520 5.28531 5.33164 5.54457 5.65570 6.23732 6.40661 6.46586 6.84063 6.90935 7.11164 8.32475 8.70377 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.007493 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.469097 B = 3736.157595 C = 5195.529813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.078 3.922 4 C -0.004 4.004 5 C -0.070 4.070 6 C 0.109 3.891 7 C -0.481 4.481 8 H 0.087 0.913 9 C 0.022 3.978 10 N -0.827 5.827 11 Si 0.981 3.019 12 H -0.258 1.258 13 H -0.278 1.278 14 H -0.261 1.261 15 N -0.284 5.284 16 N -0.161 5.161 17 N -0.345 5.345 18 C 0.093 3.907 19 C 0.116 3.884 20 C -0.136 4.136 21 C -0.163 4.163 22 O -0.569 6.569 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.106 0.894 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.272 0.728 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 -10.094 12.635 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.001 3.999 4 C -0.044 4.044 5 C -0.205 4.205 6 C -0.024 4.024 7 C -0.517 4.517 8 H 0.105 0.895 9 C -0.192 4.192 10 N -0.455 5.455 11 Si 0.802 3.198 12 H -0.182 1.182 13 H -0.203 1.203 14 H -0.185 1.185 15 N -0.154 5.154 16 N -0.136 5.136 17 N -0.138 5.138 18 C -0.029 4.029 19 C 0.075 3.925 20 C -0.194 4.194 21 C -0.221 4.221 22 O -0.378 6.378 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.124 0.876 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.676 -8.317 12.884 16.353 hybrid contribution -0.899 -0.589 -1.140 1.567 sum -6.575 -8.907 11.744 16.140 Atomic orbital electron populations 1.22943 0.79610 1.04010 1.00560 1.87793 1.21379 1.27798 1.95543 1.22363 0.93355 0.84239 0.99947 1.19475 0.92078 0.89129 1.03714 1.21563 1.14012 0.98124 0.86813 1.19499 0.98922 0.89078 0.94906 1.18843 1.40945 1.03436 0.88502 0.89481 1.26701 0.93013 0.94147 1.05305 1.70174 1.32108 1.08128 1.35139 0.85287 0.79651 0.78488 0.76339 1.18230 1.20297 1.18531 1.75040 1.18323 1.21057 1.00944 1.81336 1.22581 1.03331 1.06393 1.49648 1.44529 1.13344 1.06314 1.22784 1.00028 1.02305 0.77788 1.21653 0.93556 0.85470 0.91859 1.21703 0.97582 0.98861 1.01233 1.22346 1.03852 1.03431 0.92436 1.86700 1.48016 1.31637 1.71462 0.92995 0.94281 0.87615 0.94639 0.92936 0.89105 0.90808 0.91849 0.87325 0.86839 0.89839 0.91536 0.95827 0.89892 0.90974 0.89786 0.76613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 11.01 113.37 1.25 1.75 16 2 O -0.41 -11.48 10.70 -148.98 -1.59 -13.08 16 3 C 0.08 2.48 5.92 71.98 0.43 2.91 16 4 C 0.00 -0.15 5.40 29.85 0.16 0.01 16 5 C -0.07 -3.20 6.02 42.25 0.25 -2.94 16 6 C 0.11 6.21 6.72 39.67 0.27 6.48 16 7 C -0.48 -27.37 9.11 23.43 0.21 -27.15 16 8 H 0.09 4.59 7.29 -2.91 -0.02 4.57 16 9 C 0.02 1.22 5.49 85.18 0.47 1.69 16 10 N -0.83 -49.90 11.92 21.79 0.26 -49.64 16 11 Si 0.98 42.08 29.56 68.60 2.03 44.10 16 12 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 13 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 15 N -0.28 -17.34 10.56 -52.51 -0.55 -17.90 16 16 N -0.16 -8.54 12.71 37.02 0.47 -8.07 16 17 N -0.34 -14.56 3.00 -331.64 -1.00 -15.55 16 18 C 0.09 2.62 5.27 86.38 0.45 3.07 16 19 C 0.12 2.98 1.17 -10.80 -0.01 2.97 16 20 C -0.14 -4.23 8.60 71.98 0.62 -3.61 16 21 C -0.16 -2.55 8.82 71.98 0.63 -1.92 16 22 O -0.57 -16.53 11.91 -148.98 -1.77 -18.31 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 2.58 5.23 -2.39 -0.01 2.57 16 29 H 0.07 2.85 7.55 -2.39 -0.02 2.83 16 30 H 0.27 15.17 8.30 -92.70 -0.77 14.40 16 31 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.11 2.47 7.77 -2.39 -0.02 2.45 16 33 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.02 0.97 6.81 -2.39 -0.02 0.95 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.38 8.08 7.16 -74.06 -0.53 7.55 16 Total: -1.00 -77.69 324.88 3.09 -74.60 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.52 Total: 20.58 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 4.73 Total: -16.74 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -0.82 Total: -91.17 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -3.37 Total: -31.38 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -77.69 3.09 -74.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.086 kcal (2) G-P(sol) polarization free energy of solvation -77.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds