Wall clock time and date at job start Mon Mar 30 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99831 * 2 1 4 4 H 1.09000 * 109.46891 * 330.00028 * 3 2 1 5 5 C 1.52998 * 109.47255 * 209.99834 * 3 2 1 6 6 C 1.50701 * 109.47347 * 90.00021 * 3 2 1 7 7 C 1.39018 * 126.77007 * 44.99557 * 6 3 2 8 8 C 1.41487 * 126.02140 * 0.02562 * 7 6 3 9 9 H 1.08007 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.39734 * 120.00154 * 179.97438 * 8 7 6 11 11 N 1.30989 * 120.00084 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00179 * 180.02562 * 10 8 7 13 13 H 1.48511 * 109.46761 * 60.00113 * 12 10 8 14 14 H 1.48501 * 109.47018 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47130 * 300.00179 * 12 10 8 16 16 N 1.34835 * 107.95729 * 180.02562 * 7 6 3 17 17 N 1.28680 * 109.63597 * 359.71130 * 16 7 6 18 18 N 1.35017 * 126.77283 * 225.00473 * 6 3 2 19 19 C 1.46497 * 126.49040 * 359.97438 * 18 6 3 20 20 H 1.08997 * 109.47487 * 0.02562 * 19 18 6 21 21 C 1.52998 * 109.47215 * 120.00685 * 19 18 6 22 22 C 1.53001 * 109.46900 * 240.00233 * 19 18 6 23 23 H 1.08999 * 109.47164 * 60.00014 * 22 19 18 24 24 C 1.53003 * 109.47376 * 180.02562 * 22 19 18 25 25 O 1.42903 * 109.47171 * 299.99748 * 22 19 18 26 26 H 1.09002 * 109.47256 * 60.00148 * 1 2 3 27 27 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47286 * 299.99788 * 1 2 3 29 29 H 1.08994 * 109.47390 * 300.00362 * 5 3 2 30 30 H 1.09007 * 109.46753 * 60.00068 * 5 3 2 31 31 H 1.09000 * 109.47108 * 179.97438 * 5 3 2 32 32 H 0.96998 * 120.00304 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.47666 * 59.99452 * 21 19 18 34 34 H 1.08999 * 109.47493 * 179.97438 * 21 19 18 35 35 H 1.09005 * 109.46619 * 299.99711 * 21 19 18 36 36 H 1.08997 * 109.47258 * 179.97438 * 24 22 19 37 37 H 1.08997 * 109.46943 * 300.00048 * 24 22 19 38 38 H 1.08999 * 109.47269 * 59.99703 * 24 22 19 39 39 H 0.96700 * 114.00311 * 300.00378 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 3.3589 1.2634 -0.7212 6 6 2.2145 1.7645 1.4208 7 6 2.7447 1.0194 2.4679 8 6 3.1949 -0.3198 2.3917 9 1 3.1425 -0.8547 1.4549 10 6 3.7084 -0.9500 3.5283 11 7 3.7734 -0.3008 4.6642 12 14 4.3035 -2.7178 3.4276 13 1 5.4048 -2.8136 2.4359 14 1 4.7983 -3.1501 4.7593 15 1 3.1812 -3.5947 3.0073 16 7 2.7543 1.7978 3.5688 17 7 2.2798 2.9589 3.2816 18 7 1.9186 2.9803 1.9279 19 6 1.3359 4.1098 1.1994 20 1 1.1687 3.8249 0.1607 21 6 0.0029 4.4982 1.8421 22 6 2.2946 5.3010 1.2540 23 1 3.2443 5.0244 0.7961 24 6 1.6858 6.4810 0.4937 25 8 2.5132 5.6745 2.6159 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 4.0241 0.5695 -0.2074 30 1 3.2111 0.9314 -1.7489 31 1 3.8019 2.2592 -0.7216 32 1 4.1301 -0.7381 5.4530 33 1 0.1697 4.7830 2.8810 34 1 -0.4305 5.3389 1.3004 35 1 -0.6800 3.6495 1.8032 36 1 2.3686 7.3297 0.5330 37 1 1.5187 6.1964 -0.5451 38 1 0.7363 6.7575 0.9519 39 1 1.7092 5.9334 3.0867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:11 Heat of formation + Delta-G solvation = -7.794081 kcal Electronic energy + Delta-G solvation = -22124.748545 eV Core-core repulsion = 18876.855067 eV Total energy + Delta-G solvation = -3247.893478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12659 -37.89220 -37.21743 -33.89785 -32.98369 -31.74170 -30.45775 -28.64911 -28.47632 -25.89580 -25.23436 -24.45473 -22.49747 -21.50119 -19.62768 -19.00611 -17.34272 -16.06499 -15.93998 -15.75558 -15.32681 -14.73790 -14.66536 -14.30808 -14.19732 -13.43016 -13.06676 -12.80741 -12.44453 -12.32836 -12.20389 -11.95064 -11.66121 -11.63663 -11.49276 -11.15792 -11.05857 -10.99775 -10.75365 -10.67198 -10.42191 -10.11764 -9.87929 -9.63378 -9.15796 -9.07567 -8.66047 -8.32141 -7.29196 -6.26400 -4.01969 2.88029 3.26617 3.27507 3.30760 3.55801 4.23709 4.40434 4.47732 4.50703 4.83607 4.94374 5.08694 5.16154 5.30662 5.45659 5.52763 5.63359 5.65347 5.71962 5.75636 5.79996 5.86979 5.98471 6.04705 6.06125 6.11802 6.28075 6.31992 6.39617 6.83669 7.05364 7.27283 7.36578 7.62911 7.90925 7.94388 8.25934 8.68048 8.96069 9.23089 10.34074 10.70178 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.007076 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.340517 B = 3956.122352 C = 4688.444421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.362 6.362 3 C 0.196 3.804 4 H 0.039 0.961 5 C -0.139 4.139 6 C -0.168 4.168 7 C 0.176 3.824 8 C -0.433 4.433 9 H 0.090 0.910 10 C 0.070 3.930 11 N -0.777 5.777 12 Si 0.905 3.095 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.269 1.269 16 N -0.237 5.237 17 N -0.096 5.096 18 N -0.369 5.369 19 C 0.131 3.869 20 H 0.090 0.910 21 C -0.164 4.164 22 C 0.098 3.902 23 H 0.097 0.903 24 C -0.185 4.185 25 O -0.538 6.538 26 H 0.027 0.973 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.270 0.730 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 7.708 -10.378 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.136 3.864 4 H 0.057 0.943 5 C -0.197 4.197 6 C -0.297 4.297 7 C 0.047 3.953 8 C -0.469 4.469 9 H 0.108 0.892 10 C -0.149 4.149 11 N -0.404 5.404 12 Si 0.731 3.269 13 H -0.194 1.194 14 H -0.208 1.208 15 H -0.194 1.194 16 N -0.111 5.111 17 N -0.073 5.073 18 N -0.168 5.168 19 C 0.026 3.974 20 H 0.108 0.892 21 C -0.222 4.222 22 C 0.038 3.962 23 H 0.115 0.885 24 C -0.243 4.243 25 O -0.342 6.342 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.711 8.167 -8.978 13.413 hybrid contribution -0.690 -0.964 -0.912 1.496 sum -6.401 7.202 -9.890 13.807 Atomic orbital electron populations 1.22600 0.82647 1.01847 0.98751 1.88016 1.18214 1.27239 1.94464 1.19705 0.93881 0.83663 0.89154 0.94346 1.21785 0.96725 1.02305 0.98889 1.21718 1.21286 0.88800 0.97921 1.18891 0.96361 0.94665 0.85364 1.18694 1.37113 0.94421 0.96686 0.89231 1.25852 0.94728 0.99172 0.95118 1.70032 1.33896 1.36442 1.00020 0.86436 0.79598 0.83173 0.77689 1.19375 1.20849 1.19354 1.75158 1.15034 0.97082 1.23827 1.81521 1.18003 1.17353 0.90401 1.49325 1.48684 1.08914 1.09872 1.21636 0.93471 0.86699 0.95621 0.89203 1.22164 0.96070 1.01855 1.02127 1.22158 0.98692 0.91532 0.83861 0.88489 1.22571 1.01676 0.99073 1.00940 1.86713 1.36308 1.88553 1.22673 0.95468 0.90312 0.94497 0.90350 0.93024 0.92318 0.91902 0.91101 0.91277 0.91969 0.91528 0.91651 0.91843 0.78387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.81 101.05 1.09 1.72 16 2 O -0.36 -7.28 8.79 -35.23 -0.31 -7.59 16 3 C 0.20 3.77 2.87 -27.88 -0.08 3.69 16 4 H 0.04 0.64 6.30 -51.93 -0.33 0.31 16 5 C -0.14 -2.43 9.54 37.16 0.35 -2.08 16 6 C -0.17 -3.93 6.04 -80.90 -0.49 -4.42 16 7 C 0.18 4.92 6.69 -85.02 -0.57 4.35 16 8 C -0.43 -12.16 8.68 -37.79 -0.33 -12.49 16 9 H 0.09 2.42 6.58 -52.48 -0.35 2.08 16 10 C 0.07 1.92 5.49 -17.35 -0.10 1.83 16 11 N -0.78 -22.64 11.92 55.54 0.66 -21.98 16 12 Si 0.91 20.45 29.56 -169.99 -5.02 15.42 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 N -0.24 -7.01 10.55 32.05 0.34 -6.68 16 17 N -0.10 -2.49 12.63 60.35 0.76 -1.73 16 18 N -0.37 -7.99 3.29 -49.74 -0.16 -8.16 16 19 C 0.13 2.03 3.02 -67.93 -0.21 1.82 16 20 H 0.09 1.23 6.52 -51.93 -0.34 0.89 16 21 C -0.16 -2.14 8.81 37.16 0.33 -1.81 16 22 C 0.10 1.40 3.61 -26.73 -0.10 1.30 16 23 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 24 C -0.18 -1.80 9.18 37.16 0.34 -1.46 16 25 O -0.54 -8.92 12.22 -35.23 -0.43 -9.35 16 26 H 0.03 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.56 7.86 -51.93 -0.41 1.15 16 30 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.27 7.28 8.30 -40.82 -0.34 6.94 16 33 H 0.07 0.99 6.78 -51.93 -0.35 0.64 16 34 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 39 H 0.37 4.97 7.33 45.56 0.33 5.30 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -34.16 320.77 -4.12 -38.28 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.04 Total: 4.48 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 0.25 Total: -7.55 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 1.60 Total: -38.54 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.74 Total: -16.94 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.16 -4.12 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.490 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds