Wall clock time and date at job start Mon Mar 30 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99831 * 2 1 4 4 H 1.09000 * 109.46891 * 330.00028 * 3 2 1 5 5 C 1.52998 * 109.47255 * 209.99834 * 3 2 1 6 6 C 1.50701 * 109.47347 * 90.00021 * 3 2 1 7 7 C 1.39018 * 126.77007 * 44.99557 * 6 3 2 8 8 C 1.41487 * 126.02140 * 0.02562 * 7 6 3 9 9 H 1.08007 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.39734 * 120.00154 * 179.97438 * 8 7 6 11 11 N 1.30989 * 120.00084 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00179 * 180.02562 * 10 8 7 13 13 H 1.48511 * 109.46761 * 60.00113 * 12 10 8 14 14 H 1.48501 * 109.47018 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47130 * 300.00179 * 12 10 8 16 16 N 1.34835 * 107.95729 * 180.02562 * 7 6 3 17 17 N 1.28680 * 109.63597 * 359.71130 * 16 7 6 18 18 N 1.35017 * 126.77283 * 225.00473 * 6 3 2 19 19 C 1.46497 * 126.49040 * 359.97438 * 18 6 3 20 20 H 1.08997 * 109.47487 * 0.02562 * 19 18 6 21 21 C 1.52998 * 109.47215 * 120.00685 * 19 18 6 22 22 C 1.53001 * 109.46900 * 240.00233 * 19 18 6 23 23 H 1.08999 * 109.47164 * 60.00014 * 22 19 18 24 24 C 1.53003 * 109.47376 * 180.02562 * 22 19 18 25 25 O 1.42903 * 109.47171 * 299.99748 * 22 19 18 26 26 H 1.09002 * 109.47256 * 60.00148 * 1 2 3 27 27 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47286 * 299.99788 * 1 2 3 29 29 H 1.08994 * 109.47390 * 300.00362 * 5 3 2 30 30 H 1.09007 * 109.46753 * 60.00068 * 5 3 2 31 31 H 1.09000 * 109.47108 * 179.97438 * 5 3 2 32 32 H 0.96998 * 120.00304 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.47666 * 59.99452 * 21 19 18 34 34 H 1.08999 * 109.47493 * 179.97438 * 21 19 18 35 35 H 1.09005 * 109.46619 * 299.99711 * 21 19 18 36 36 H 1.08997 * 109.47258 * 179.97438 * 24 22 19 37 37 H 1.08997 * 109.46943 * 300.00048 * 24 22 19 38 38 H 1.08999 * 109.47269 * 59.99703 * 24 22 19 39 39 H 0.96700 * 114.00311 * 300.00378 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 3.3589 1.2634 -0.7212 6 6 2.2145 1.7645 1.4208 7 6 2.7447 1.0194 2.4679 8 6 3.1949 -0.3198 2.3917 9 1 3.1425 -0.8547 1.4549 10 6 3.7084 -0.9500 3.5283 11 7 3.7734 -0.3008 4.6642 12 14 4.3035 -2.7178 3.4276 13 1 5.4048 -2.8136 2.4359 14 1 4.7983 -3.1501 4.7593 15 1 3.1812 -3.5947 3.0073 16 7 2.7543 1.7978 3.5688 17 7 2.2798 2.9589 3.2816 18 7 1.9186 2.9803 1.9279 19 6 1.3359 4.1098 1.1994 20 1 1.1687 3.8249 0.1607 21 6 0.0029 4.4982 1.8421 22 6 2.2946 5.3010 1.2540 23 1 3.2443 5.0244 0.7961 24 6 1.6858 6.4810 0.4937 25 8 2.5132 5.6745 2.6159 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 4.0241 0.5695 -0.2074 30 1 3.2111 0.9314 -1.7489 31 1 3.8019 2.2592 -0.7216 32 1 4.1301 -0.7381 5.4530 33 1 0.1697 4.7830 2.8810 34 1 -0.4305 5.3389 1.3004 35 1 -0.6800 3.6495 1.8032 36 1 2.3686 7.3297 0.5330 37 1 1.5187 6.1964 -0.5451 38 1 0.7363 6.7575 0.9519 39 1 1.7092 5.9334 3.0867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:10 Heat of formation + Delta-G solvation = -35.075256 kcal Electronic energy + Delta-G solvation = -22125.931545 eV Core-core repulsion = 18876.855067 eV Total energy + Delta-G solvation = -3249.076479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94884 -39.17014 -38.75523 -35.55530 -34.76953 -33.27269 -31.87322 -30.32354 -29.84710 -27.23276 -26.98816 -25.84333 -24.12856 -23.02387 -21.35570 -20.60216 -19.04465 -17.63640 -17.38802 -17.24476 -16.63706 -16.47891 -16.16201 -15.76344 -15.59039 -14.93054 -14.68953 -14.20679 -13.78741 -13.51195 -13.31677 -13.24903 -13.16558 -12.88801 -12.83468 -12.79353 -12.70045 -12.46148 -12.32881 -12.08560 -11.89399 -11.68181 -11.51250 -11.24271 -10.99841 -10.77547 -10.43100 -10.10156 -9.27406 -8.25048 -6.08698 1.05279 1.42607 1.47226 1.55263 1.97873 2.36521 2.40563 3.05216 3.36165 3.61785 3.70166 3.75958 3.89637 4.00317 4.13138 4.22614 4.33899 4.43685 4.53439 4.64800 4.67744 4.72272 4.82999 4.85420 4.87955 4.96341 5.00431 5.14093 5.16475 5.30402 5.35570 5.41791 5.54649 5.63776 6.41695 6.54869 6.59208 6.84392 6.98543 7.18740 8.40016 8.74209 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.007076 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.340517 B = 3956.122352 C = 4688.444421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.192 3.808 4 H 0.080 0.920 5 C -0.135 4.135 6 C -0.134 4.134 7 C 0.128 3.872 8 C -0.460 4.460 9 H 0.091 0.909 10 C 0.017 3.983 11 N -0.829 5.829 12 Si 0.979 3.021 13 H -0.260 1.260 14 H -0.279 1.279 15 H -0.261 1.261 16 N -0.297 5.297 17 N -0.130 5.130 18 N -0.347 5.347 19 C 0.113 3.887 20 H 0.121 0.879 21 C -0.157 4.157 22 C 0.098 3.902 23 H 0.076 0.924 24 C -0.171 4.171 25 O -0.568 6.568 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.015 0.985 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.269 0.731 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 8.686 -13.853 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.132 3.868 4 H 0.097 0.903 5 C -0.193 4.193 6 C -0.267 4.267 7 C -0.003 4.003 8 C -0.497 4.497 9 H 0.109 0.891 10 C -0.196 4.196 11 N -0.458 5.458 12 Si 0.801 3.199 13 H -0.185 1.185 14 H -0.204 1.204 15 H -0.186 1.186 16 N -0.168 5.168 17 N -0.106 5.106 18 N -0.145 5.145 19 C 0.010 3.990 20 H 0.138 0.862 21 C -0.215 4.215 22 C 0.038 3.962 23 H 0.094 0.906 24 C -0.229 4.229 25 O -0.375 6.375 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.338 9.220 -12.450 17.142 hybrid contribution -0.351 -1.061 -0.057 1.119 sum -7.689 8.159 -12.507 16.796 Atomic orbital electron populations 1.22815 0.80754 1.03228 0.99528 1.87999 1.20408 1.27540 1.94358 1.20032 0.95825 0.84406 0.86568 0.90278 1.21765 0.94975 1.02278 1.00288 1.22600 1.16550 0.88429 0.99161 1.19427 0.98589 0.95688 0.86637 1.18909 1.38549 0.95134 0.97063 0.89138 1.26757 0.94693 1.03653 0.94480 1.70199 1.36319 1.38455 1.00842 0.85310 0.79232 0.77487 0.77828 1.18456 1.20425 1.18567 1.75103 1.17549 0.98432 1.25703 1.81389 1.20103 1.16586 0.92474 1.49879 1.45575 1.09967 1.09042 1.22374 0.94791 0.85261 0.96581 0.86169 1.22152 0.94274 1.03180 1.01882 1.22222 0.97787 0.92800 0.83416 0.90584 1.22462 1.02169 0.96675 1.01551 1.86680 1.37727 1.88766 1.24311 0.91479 0.88951 0.96623 0.93618 0.89336 0.91238 0.92092 0.92521 0.86385 0.93046 0.91232 0.89245 0.89890 0.77101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.81 113.37 1.23 2.21 16 2 O -0.39 -14.72 8.79 -148.98 -1.31 -16.03 16 3 C 0.19 6.88 2.87 29.85 0.09 6.96 16 4 H 0.08 2.20 6.30 -2.39 -0.02 2.19 16 5 C -0.14 -4.39 9.54 71.98 0.69 -3.71 16 6 C -0.13 -6.23 6.04 42.26 0.26 -5.97 16 7 C 0.13 7.45 6.69 39.67 0.27 7.72 16 8 C -0.46 -26.84 8.68 23.43 0.20 -26.64 16 9 H 0.09 5.04 6.58 -2.91 -0.02 5.02 16 10 C 0.02 0.98 5.49 85.18 0.47 1.45 16 11 N -0.83 -51.20 11.92 21.79 0.26 -50.94 16 12 Si 0.98 43.56 29.56 68.60 2.03 45.58 16 13 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 16 N -0.30 -18.51 10.55 -52.52 -0.55 -19.07 16 17 N -0.13 -6.97 12.63 37.02 0.47 -6.51 16 18 N -0.35 -14.89 3.29 -311.28 -1.02 -15.92 16 19 C 0.11 3.16 3.02 44.99 0.14 3.29 16 20 H 0.12 2.67 6.52 -2.39 -0.02 2.66 16 21 C -0.16 -3.61 8.81 71.98 0.63 -2.98 16 22 C 0.10 2.56 3.61 30.60 0.11 2.67 16 23 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.17 -2.57 9.18 71.98 0.66 -1.90 16 25 O -0.57 -18.52 12.22 -148.98 -1.82 -20.34 16 26 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 27 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.04 1.79 7.86 -2.39 -0.02 1.77 16 30 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.27 15.43 8.30 -92.71 -0.77 14.66 16 33 H 0.06 1.49 6.78 -2.39 -0.02 1.47 16 34 H 0.12 1.58 6.43 -2.39 -0.02 1.57 16 35 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.95 6.43 -2.39 -0.02 0.93 16 39 H 0.38 9.96 7.33 -74.06 -0.54 9.42 16 Total: -1.00 -81.61 320.77 3.30 -78.31 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.52 Total: 21.80 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.73 Total: -16.89 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -0.85 Total: -92.43 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -3.13 Total: -36.37 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -81.61 3.30 -78.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.233 kcal (2) G-P(sol) polarization free energy of solvation -81.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds