Wall clock time and date at job start Mon Mar 30 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00557 * 2 1 4 4 H 1.09003 * 109.46843 * 330.00143 * 3 2 1 5 5 C 1.52999 * 109.47205 * 210.00082 * 3 2 1 6 6 C 1.50697 * 109.47164 * 89.99662 * 3 2 1 7 7 C 1.39014 * 126.76957 * 45.02917 * 6 3 2 8 8 C 1.41488 * 126.02230 * 0.02562 * 7 6 3 9 9 H 1.08002 * 120.00209 * 359.71771 * 8 7 6 10 10 C 1.39745 * 120.00140 * 179.43453 * 8 7 6 11 11 N 1.30984 * 119.99717 * 0.27930 * 10 8 7 12 12 Si 1.86794 * 119.99944 * 180.27366 * 10 8 7 13 13 H 1.48499 * 109.47074 * 60.00943 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47331 * 300.00442 * 12 10 8 16 16 N 1.34850 * 107.95784 * 179.75255 * 7 6 3 17 17 N 1.28666 * 109.63254 * 0.24477 * 16 7 6 18 18 N 1.35021 * 126.77705 * 225.20149 * 6 3 2 19 19 C 1.46508 * 126.48887 * 359.97438 * 18 6 3 20 20 H 1.09003 * 109.46924 * 0.26393 * 19 18 6 21 21 C 1.52992 * 109.46806 * 240.26730 * 19 18 6 22 22 C 1.53001 * 109.47007 * 120.26662 * 19 18 6 23 23 H 1.09001 * 109.46638 * 180.02562 * 22 19 18 24 24 C 1.53001 * 109.46965 * 299.99758 * 22 19 18 25 25 O 1.42890 * 109.46986 * 60.00248 * 22 19 18 26 26 H 1.08996 * 109.47099 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46694 * 300.00311 * 1 2 3 28 28 H 1.08997 * 109.47004 * 60.00095 * 1 2 3 29 29 H 1.08993 * 109.47354 * 299.99671 * 5 3 2 30 30 H 1.09004 * 109.47175 * 60.00197 * 5 3 2 31 31 H 1.09002 * 109.47000 * 179.97438 * 5 3 2 32 32 H 0.96996 * 120.00078 * 179.97438 * 11 10 8 33 33 H 1.08996 * 109.47620 * 60.00149 * 21 19 18 34 34 H 1.09001 * 109.47046 * 180.02562 * 21 19 18 35 35 H 1.09002 * 109.47558 * 299.99834 * 21 19 18 36 36 H 1.09004 * 109.46584 * 180.02562 * 24 22 19 37 37 H 1.08995 * 109.46953 * 299.99873 * 24 22 19 38 38 H 1.09001 * 109.47301 * 60.00262 * 24 22 19 39 39 H 0.96703 * 114.00050 * 180.02562 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 3.3590 1.2631 -0.7213 6 6 2.2146 1.7643 1.4208 7 6 2.7452 1.0194 2.4677 8 6 3.1961 -0.3196 2.3914 9 1 3.1392 -0.8561 1.4558 10 6 3.7204 -0.9460 3.5252 11 7 3.7894 -0.2954 4.6599 12 14 4.3226 -2.7113 3.4225 13 1 5.4173 -2.8035 2.4234 14 1 4.8276 -3.1400 4.7516 15 1 3.2013 -3.5937 3.0113 16 7 2.7602 1.7997 3.5674 17 7 2.2784 2.9581 3.2821 18 7 1.9155 2.9790 1.9289 19 6 1.3285 4.1071 1.2014 20 1 1.1573 3.8208 0.1637 21 6 2.2864 5.2991 1.2501 22 6 -0.0019 4.4952 1.8497 23 1 -0.4388 5.3343 1.3081 24 6 -0.9598 3.3031 1.8010 25 8 0.2227 4.8706 3.2100 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.0242 0.5692 -0.2075 30 1 3.2112 0.9312 -1.7490 31 1 3.8022 2.2589 -0.7216 32 1 4.1530 -0.7303 5.4470 33 1 3.2342 5.0227 0.7883 34 1 1.8496 6.1386 0.7093 35 1 2.4577 5.5855 2.2878 36 1 -1.9078 3.5798 2.2624 37 1 -1.1311 3.0169 0.7633 38 1 -0.5231 2.4638 2.3421 39 1 -0.5795 5.1292 3.6842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:15 Heat of formation + Delta-G solvation = -33.435160 kcal Electronic energy + Delta-G solvation = -22388.890816 eV Core-core repulsion = 19139.885457 eV Total energy + Delta-G solvation = -3249.005359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.91163 -38.80770 -38.73321 -35.66450 -34.82830 -33.23808 -31.42405 -30.64333 -30.27733 -27.22141 -26.87223 -25.12264 -24.10278 -23.36247 -21.38812 -20.48045 -18.81107 -18.26394 -17.38254 -17.08301 -16.55712 -16.33761 -15.89361 -15.71346 -15.22221 -14.91651 -14.68507 -14.19909 -14.13277 -13.42603 -13.37984 -13.27215 -13.16001 -12.86435 -12.79014 -12.76512 -12.67596 -12.61830 -12.29778 -12.05585 -11.79532 -11.68123 -11.46021 -11.06178 -10.88838 -10.74064 -10.39946 -10.12952 -9.22859 -8.22770 -6.05605 1.11218 1.42497 1.47868 1.54978 2.03091 2.37304 2.44010 3.07294 3.32600 3.58325 3.65192 3.89245 4.00482 4.04000 4.17883 4.24325 4.36816 4.46221 4.54301 4.67237 4.69024 4.73984 4.83854 4.85784 4.86528 4.89241 5.00469 5.19381 5.21859 5.26403 5.38544 5.44034 5.61527 5.67279 6.45141 6.58877 6.62605 6.97527 7.03186 7.21481 8.46528 8.76622 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.007649 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.161375 B = 3659.857556 C = 4232.839731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.192 3.808 4 H 0.079 0.921 5 C -0.136 4.136 6 C -0.129 4.129 7 C 0.127 3.873 8 C -0.459 4.459 9 H 0.090 0.910 10 C 0.017 3.983 11 N -0.830 5.830 12 Si 0.978 3.022 13 H -0.260 1.260 14 H -0.280 1.280 15 H -0.262 1.262 16 N -0.301 5.301 17 N -0.125 5.125 18 N -0.339 5.339 19 C 0.145 3.855 20 H 0.127 0.873 21 C -0.147 4.147 22 C 0.098 3.902 23 H 0.110 0.890 24 C -0.179 4.179 25 O -0.568 6.568 26 H 0.090 0.910 27 H 0.017 0.983 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.268 0.732 33 H 0.049 0.951 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.016 0.984 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 7.639 -13.408 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.132 3.868 4 H 0.097 0.903 5 C -0.194 4.194 6 C -0.263 4.263 7 C -0.005 4.005 8 C -0.496 4.496 9 H 0.108 0.892 10 C -0.196 4.196 11 N -0.459 5.459 12 Si 0.800 3.200 13 H -0.184 1.184 14 H -0.205 1.205 15 H -0.187 1.187 16 N -0.171 5.171 17 N -0.101 5.101 18 N -0.137 5.137 19 C 0.042 3.958 20 H 0.145 0.855 21 C -0.205 4.205 22 C 0.038 3.962 23 H 0.128 0.872 24 C -0.237 4.237 25 O -0.375 6.375 26 H 0.108 0.892 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.035 0.965 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.564 8.178 -12.014 16.869 hybrid contribution -0.412 -1.070 0.029 1.147 sum -8.976 7.108 -11.985 16.575 Atomic orbital electron populations 1.22838 0.80835 1.03145 0.99621 1.88000 1.20359 1.27598 1.94368 1.20027 0.95780 0.84354 0.86650 0.90316 1.21769 0.95019 1.02329 1.00235 1.22545 1.16296 0.88498 0.98939 1.19419 0.98767 0.95599 0.86721 1.18889 1.38311 0.95222 0.97153 0.89229 1.26740 0.94839 1.03487 0.94536 1.70207 1.36406 1.38386 1.00916 0.85335 0.79198 0.77683 0.77789 1.18422 1.20506 1.18695 1.75126 1.17497 0.98749 1.25772 1.81510 1.19439 1.16713 0.92455 1.49782 1.45140 1.09960 1.08789 1.21829 0.93392 0.85150 0.95389 0.85513 1.21974 0.98624 0.97085 1.02812 1.22188 0.92895 0.96693 0.84394 0.87219 1.22463 0.99793 0.98449 1.02963 1.86767 1.37420 1.89018 1.24267 0.89168 0.96413 0.91450 0.93626 0.89426 0.91146 0.92212 0.93203 0.87287 0.93396 0.90298 0.90050 0.96467 0.76647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 10.81 113.37 1.23 2.17 16 2 O -0.39 -14.68 8.79 -148.98 -1.31 -15.99 16 3 C 0.19 6.85 2.88 29.85 0.09 6.93 16 4 H 0.08 2.17 6.30 -2.39 -0.02 2.16 16 5 C -0.14 -4.40 9.54 71.98 0.69 -3.71 16 6 C -0.13 -5.98 6.04 42.25 0.26 -5.72 16 7 C 0.13 7.37 6.69 39.67 0.27 7.64 16 8 C -0.46 -26.83 8.68 23.44 0.20 -26.63 16 9 H 0.09 5.00 6.59 -2.91 -0.02 4.98 16 10 C 0.02 0.96 5.49 85.18 0.47 1.42 16 11 N -0.83 -51.51 11.92 21.80 0.26 -51.25 16 12 Si 0.98 43.82 29.56 68.60 2.03 45.84 16 13 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 16 N -0.30 -18.86 10.56 -52.51 -0.55 -19.42 16 17 N -0.13 -6.87 12.63 37.02 0.47 -6.40 16 18 N -0.34 -14.64 2.52 -311.27 -0.78 -15.43 16 19 C 0.14 4.24 2.94 44.99 0.13 4.37 16 20 H 0.13 2.85 6.51 -2.39 -0.02 2.84 16 21 C -0.15 -3.97 9.32 71.98 0.67 -3.30 16 22 C 0.10 2.41 3.39 30.59 0.10 2.51 16 23 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 24 C -0.18 -4.55 9.38 71.98 0.67 -3.88 16 25 O -0.57 -17.36 11.58 -148.98 -1.72 -19.08 16 26 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 29 H 0.04 1.78 7.86 -2.39 -0.02 1.76 16 30 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.27 15.47 8.30 -92.71 -0.77 14.70 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.61 7.68 -2.39 -0.02 1.59 16 36 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.02 0.61 7.60 -2.39 -0.02 0.59 16 39 H 0.39 8.16 9.08 -74.06 -0.67 7.48 16 Total: -1.00 -82.94 325.32 3.53 -79.41 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.38 Total: 20.50 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.77 Total: -18.18 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -0.61 Total: -92.50 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -3.03 Total: -35.07 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -82.94 3.53 -79.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.971 kcal (2) G-P(sol) polarization free energy of solvation -82.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds