Wall clock time and date at job start Mon Mar 30 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47356 * 2 1 4 4 H 1.08999 * 109.47052 * 54.48487 * 3 2 1 5 5 C 1.53000 * 109.47347 * 174.48895 * 3 2 1 6 6 O 1.42894 * 109.47066 * 296.49068 * 5 3 2 7 7 N 1.46501 * 109.46923 * 294.49440 * 3 2 1 8 8 N 1.40124 * 126.48805 * 299.68217 * 7 3 2 9 9 N 1.28673 * 108.93501 * 179.81168 * 8 7 3 10 10 C 1.34834 * 109.63037 * 0.45820 * 9 8 7 11 11 C 1.41500 * 126.01867 * 179.70576 * 10 9 8 12 12 H 1.08004 * 120.00115 * 179.97438 * 11 10 9 13 13 C 1.39733 * 120.00047 * 0.02562 * 11 10 9 14 14 N 1.30990 * 120.00168 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99999 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46704 * 90.00600 * 15 13 11 17 17 H 1.48497 * 109.47125 * 209.99915 * 15 13 11 18 18 H 1.48499 * 109.47289 * 330.00313 * 15 13 11 19 19 C 1.35018 * 126.49622 * 119.99642 * 7 3 2 20 20 C 1.50691 * 126.76897 * 0.02562 * 19 7 3 21 21 C 1.53008 * 109.47109 * 90.00054 * 20 19 7 22 22 O 1.42901 * 109.46835 * 180.02562 * 21 20 19 23 23 C 1.42902 * 113.99689 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.47017 * 305.49605 * 1 2 3 25 25 H 1.08998 * 109.47192 * 65.49580 * 1 2 3 26 26 H 1.09000 * 109.46875 * 185.49982 * 1 2 3 27 27 H 1.08997 * 109.47177 * 239.99827 * 2 1 3 28 28 H 1.09002 * 109.47363 * 120.00021 * 2 1 3 29 29 H 1.09000 * 109.47111 * 176.48868 * 5 3 2 30 30 H 1.09004 * 109.46847 * 56.49468 * 5 3 2 31 31 H 0.96702 * 113.99994 * 179.97438 * 6 5 3 32 32 H 0.96998 * 120.00162 * 179.97438 * 14 13 11 33 33 H 1.09004 * 109.47212 * 209.99481 * 20 19 7 34 34 H 1.09002 * 109.47654 * 329.99878 * 20 19 7 35 35 H 1.09001 * 109.46759 * 299.99275 * 21 20 19 36 36 H 1.08997 * 109.47205 * 59.99844 * 21 20 19 37 37 H 1.09002 * 109.46972 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47172 * 299.99550 * 23 22 21 39 39 H 1.09004 * 109.47163 * 60.00034 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9841 0.8365 5 6 3.5638 1.4447 0.1385 6 8 3.9280 0.8834 1.4011 7 7 1.6629 2.0938 -1.2569 8 7 2.0401 1.6971 -2.5468 9 7 1.5172 2.5044 -3.4016 10 6 0.8029 3.4479 -2.7554 11 6 0.0894 4.5103 -3.3591 12 1 -0.4529 5.2142 -2.7452 13 6 0.0856 4.6481 -4.7496 14 7 0.7421 3.7936 -5.4943 15 14 -0.8570 6.0502 -5.5466 16 1 0.0329 7.2315 -5.6808 17 1 -1.3271 5.6295 -6.8909 18 1 -2.0258 6.4042 -4.7018 19 6 0.8910 3.1933 -1.3916 20 6 0.2516 3.9879 -0.2823 21 6 1.2095 5.0910 0.1724 22 8 0.6033 5.8442 1.2248 23 6 1.4197 6.9052 1.7248 24 1 -0.3633 0.5968 0.8367 25 1 -0.3633 0.4262 -0.9351 26 1 -0.3633 -1.0229 0.0985 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9328 2.4684 0.0759 30 1 4.0023 0.8508 -0.6634 31 1 4.8819 0.8526 1.5573 32 1 0.7392 3.8891 -6.4596 33 1 -0.6739 4.4366 -0.6435 34 1 0.0322 3.3284 0.5574 35 1 2.1349 4.6424 0.5337 36 1 1.4289 5.7506 -0.6672 37 1 0.8885 7.4284 2.5200 38 1 2.3494 6.4939 2.1179 39 1 1.6435 7.6028 0.9177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:14 Heat of formation + Delta-G solvation = -20.729362 kcal Electronic energy + Delta-G solvation = -21500.904239 eV Core-core repulsion = 18252.449845 eV Total energy + Delta-G solvation = -3248.454394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21012 -37.54229 -37.35918 -34.86346 -33.30520 -32.53942 -30.63608 -28.51381 -28.18998 -26.19454 -24.76557 -23.42779 -22.65685 -21.95502 -19.76773 -18.88775 -17.53185 -16.70623 -16.11865 -15.77164 -15.29670 -14.99565 -14.87287 -14.63481 -14.52816 -13.72121 -13.30713 -13.08283 -12.74229 -12.61419 -12.44976 -12.04802 -11.64580 -11.38917 -11.20076 -11.08476 -10.98511 -10.86871 -10.80134 -10.59703 -10.52403 -10.29296 -9.94307 -9.71799 -9.37472 -9.29779 -8.91069 -8.48867 -7.45443 -6.40320 -4.20036 2.70780 3.14211 3.19857 3.22964 3.37847 4.07002 4.11800 4.30591 4.46228 4.87101 5.17404 5.26280 5.38477 5.44493 5.50550 5.53853 5.55049 5.60295 5.72496 5.74971 5.80495 5.85679 5.90799 6.07106 6.10336 6.20489 6.31974 6.41350 6.56855 6.61072 6.87956 7.11075 7.39377 7.44973 7.48803 7.55595 8.11969 8.40605 8.78306 9.05501 10.16208 10.56061 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.007156 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.893970 B = 3911.916322 C = 5181.704309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.170 3.830 4 H 0.095 0.905 5 C 0.071 3.929 6 O -0.571 6.571 7 N -0.367 5.367 8 N -0.124 5.124 9 N -0.227 5.227 10 C 0.160 3.840 11 C -0.449 4.449 12 H 0.082 0.918 13 C 0.074 3.926 14 N -0.774 5.774 15 Si 0.905 3.095 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.264 1.264 19 C -0.118 4.118 20 C -0.009 4.009 21 C 0.067 3.933 22 O -0.396 6.396 23 C 0.034 3.966 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.380 0.620 32 H 0.272 0.728 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -0.038 11.882 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.065 3.935 4 H 0.113 0.887 5 C -0.008 4.008 6 O -0.376 6.376 7 N -0.165 5.165 8 N -0.100 5.100 9 N -0.099 5.099 10 C 0.031 3.969 11 C -0.485 4.485 12 H 0.100 0.900 13 C -0.146 4.146 14 N -0.400 5.400 15 Si 0.731 3.269 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.248 4.248 20 C -0.049 4.049 21 C -0.010 4.010 22 O -0.315 6.315 23 C -0.063 4.063 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.079 -1.256 10.929 11.424 hybrid contribution 0.059 1.551 0.082 1.554 sum 3.138 0.295 11.011 11.454 Atomic orbital electron populations 1.21723 0.95383 1.01124 1.02385 1.21795 0.96558 0.94910 1.02994 1.20778 0.93486 0.94812 0.84405 0.88701 1.22418 0.95329 0.97618 0.85412 1.86376 1.28676 1.85450 1.37109 1.49355 1.38781 1.22051 1.06353 1.81459 1.22859 1.22574 0.83096 1.75134 1.09934 1.03132 1.21750 1.18962 0.96782 0.94955 0.86227 1.18571 1.28915 1.09669 0.91316 0.89996 1.25783 0.94739 0.96450 0.97598 1.70013 1.32412 1.31721 1.05869 0.86365 0.80366 0.81403 0.78799 1.19833 1.20491 1.18799 1.21031 1.10880 0.96552 0.96385 1.19388 0.97790 0.93786 0.93947 1.22680 0.95633 0.93662 0.89010 1.87830 1.43637 1.46056 1.53969 1.22665 0.95049 0.90039 0.98566 0.92990 0.92159 0.92924 0.90874 0.90357 0.93431 0.92187 0.77278 0.91707 0.89527 0.92390 0.94489 0.92281 0.90127 0.94615 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.74 37.16 0.36 -1.94 16 2 C -0.12 -1.93 5.51 -26.73 -0.15 -2.08 16 3 C 0.17 2.88 2.78 -67.93 -0.19 2.69 16 4 H 0.10 1.55 6.80 -51.93 -0.35 1.20 16 5 C 0.07 1.06 6.71 37.16 0.25 1.31 16 6 O -0.57 -7.09 13.04 -35.23 -0.46 -7.55 16 7 N -0.37 -7.83 2.86 -49.74 -0.14 -7.97 16 8 N -0.12 -3.11 13.62 60.35 0.82 -2.29 16 9 N -0.23 -6.43 10.55 32.05 0.34 -6.09 16 10 C 0.16 4.30 6.72 -85.02 -0.57 3.73 16 11 C -0.45 -12.02 9.11 -37.78 -0.34 -12.36 16 12 H 0.08 2.06 7.30 -52.48 -0.38 1.67 16 13 C 0.07 1.94 5.49 -17.35 -0.10 1.84 16 14 N -0.77 -21.63 11.92 55.54 0.66 -20.97 16 15 Si 0.91 19.46 29.56 -169.99 -5.02 14.44 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 19 C -0.12 -2.68 6.37 -80.91 -0.52 -3.20 16 20 C -0.01 -0.18 5.48 -27.88 -0.15 -0.33 16 21 C 0.07 1.18 5.92 37.16 0.22 1.40 16 22 O -0.40 -6.50 10.70 -35.23 -0.38 -6.87 16 23 C 0.03 0.42 11.01 101.05 1.11 1.53 16 24 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.08 1.08 7.63 -51.93 -0.40 0.69 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.38 2.89 9.12 45.56 0.42 3.30 16 32 H 0.27 7.00 8.30 -40.82 -0.34 6.66 16 33 H 0.09 1.70 7.56 -51.93 -0.39 1.30 16 34 H 0.06 1.01 7.20 -51.93 -0.37 0.63 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -31.54 331.67 -4.51 -36.06 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.26 Total: 3.66 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.07 Total: -7.41 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 1.68 Total: -37.31 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.84 Total: -14.43 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.54 -4.51 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.326 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds