Wall clock time and date at job start Mon Mar 30 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47356 * 2 1 4 4 H 1.08999 * 109.47052 * 54.48487 * 3 2 1 5 5 C 1.53000 * 109.47347 * 174.48895 * 3 2 1 6 6 O 1.42894 * 109.47066 * 296.49068 * 5 3 2 7 7 N 1.46501 * 109.46923 * 294.49440 * 3 2 1 8 8 N 1.40124 * 126.48805 * 299.68217 * 7 3 2 9 9 N 1.28673 * 108.93501 * 179.81168 * 8 7 3 10 10 C 1.34834 * 109.63037 * 0.45820 * 9 8 7 11 11 C 1.41500 * 126.01867 * 179.70576 * 10 9 8 12 12 H 1.08004 * 120.00115 * 179.97438 * 11 10 9 13 13 C 1.39733 * 120.00047 * 0.02562 * 11 10 9 14 14 N 1.30990 * 120.00168 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99999 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46704 * 90.00600 * 15 13 11 17 17 H 1.48497 * 109.47125 * 209.99915 * 15 13 11 18 18 H 1.48499 * 109.47289 * 330.00313 * 15 13 11 19 19 C 1.35018 * 126.49622 * 119.99642 * 7 3 2 20 20 C 1.50691 * 126.76897 * 0.02562 * 19 7 3 21 21 C 1.53008 * 109.47109 * 90.00054 * 20 19 7 22 22 O 1.42901 * 109.46835 * 180.02562 * 21 20 19 23 23 C 1.42902 * 113.99689 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.47017 * 305.49605 * 1 2 3 25 25 H 1.08998 * 109.47192 * 65.49580 * 1 2 3 26 26 H 1.09000 * 109.46875 * 185.49982 * 1 2 3 27 27 H 1.08997 * 109.47177 * 239.99827 * 2 1 3 28 28 H 1.09002 * 109.47363 * 120.00021 * 2 1 3 29 29 H 1.09000 * 109.47111 * 176.48868 * 5 3 2 30 30 H 1.09004 * 109.46847 * 56.49468 * 5 3 2 31 31 H 0.96702 * 113.99994 * 179.97438 * 6 5 3 32 32 H 0.96998 * 120.00162 * 179.97438 * 14 13 11 33 33 H 1.09004 * 109.47212 * 209.99481 * 20 19 7 34 34 H 1.09002 * 109.47654 * 329.99878 * 20 19 7 35 35 H 1.09001 * 109.46759 * 299.99275 * 21 20 19 36 36 H 1.08997 * 109.47205 * 59.99844 * 21 20 19 37 37 H 1.09002 * 109.46972 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47172 * 299.99550 * 23 22 21 39 39 H 1.09004 * 109.47163 * 60.00034 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9841 0.8365 5 6 3.5638 1.4447 0.1385 6 8 3.9280 0.8834 1.4011 7 7 1.6629 2.0938 -1.2569 8 7 2.0401 1.6971 -2.5468 9 7 1.5172 2.5044 -3.4016 10 6 0.8029 3.4479 -2.7554 11 6 0.0894 4.5103 -3.3591 12 1 -0.4529 5.2142 -2.7452 13 6 0.0856 4.6481 -4.7496 14 7 0.7421 3.7936 -5.4943 15 14 -0.8570 6.0502 -5.5466 16 1 0.0329 7.2315 -5.6808 17 1 -1.3271 5.6295 -6.8909 18 1 -2.0258 6.4042 -4.7018 19 6 0.8910 3.1933 -1.3916 20 6 0.2516 3.9879 -0.2823 21 6 1.2095 5.0910 0.1724 22 8 0.6033 5.8442 1.2248 23 6 1.4197 6.9052 1.7248 24 1 -0.3633 0.5968 0.8367 25 1 -0.3633 0.4262 -0.9351 26 1 -0.3633 -1.0229 0.0985 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9328 2.4684 0.0759 30 1 4.0023 0.8508 -0.6634 31 1 4.8819 0.8526 1.5573 32 1 0.7392 3.8891 -6.4596 33 1 -0.6739 4.4366 -0.6435 34 1 0.0322 3.3284 0.5574 35 1 2.1349 4.6424 0.5337 36 1 1.4289 5.7506 -0.6672 37 1 0.8885 7.4284 2.5200 38 1 2.3494 6.4939 2.1179 39 1 1.6435 7.6028 0.9177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:13 Heat of formation + Delta-G solvation = -44.817763 kcal Electronic energy + Delta-G solvation = -21501.948791 eV Core-core repulsion = 18252.449845 eV Total energy + Delta-G solvation = -3249.498946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04456 -38.81862 -38.59251 -36.23201 -35.17031 -34.13949 -32.23780 -30.24963 -29.59379 -27.43406 -26.54454 -24.76034 -24.16640 -23.54288 -21.57412 -20.51463 -18.93449 -18.31888 -17.42216 -17.13785 -16.78239 -16.63602 -16.36720 -15.91907 -15.76670 -15.21453 -14.78696 -14.66086 -14.37182 -14.07148 -13.80298 -13.31438 -13.01537 -12.91771 -12.86290 -12.76165 -12.36562 -12.28060 -12.14528 -12.11761 -11.98713 -11.92476 -11.54196 -11.19374 -11.03853 -10.81247 -10.60010 -10.29422 -9.38918 -8.31799 -6.20170 0.91450 1.43862 1.44535 1.57903 1.77928 2.31266 2.33318 2.86044 3.24116 3.51850 3.60689 3.91750 3.92743 4.03992 4.16566 4.24389 4.33259 4.35759 4.45998 4.51289 4.55804 4.60904 4.64138 4.76203 4.80509 4.85585 4.97226 5.01163 5.04552 5.14964 5.22064 5.32161 5.52550 5.62033 6.21821 6.37471 6.41827 6.76108 6.86101 7.08409 8.26016 8.67303 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.007156 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.893970 B = 3911.916322 C = 5181.704309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.155 3.845 4 H 0.111 0.889 5 C 0.085 3.915 6 O -0.569 6.569 7 N -0.346 5.346 8 N -0.152 5.152 9 N -0.279 5.279 10 C 0.118 3.882 11 C -0.478 4.478 12 H 0.089 0.911 13 C 0.024 3.976 14 N -0.823 5.823 15 Si 0.981 3.019 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.254 1.254 19 C -0.086 4.086 20 C -0.009 4.009 21 C 0.080 3.920 22 O -0.408 6.408 23 C 0.025 3.975 24 H 0.067 0.933 25 H 0.019 0.981 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.404 0.596 32 H 0.273 0.727 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.106 0.894 38 H 0.049 0.951 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 0.635 14.783 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.052 3.948 4 H 0.129 0.871 5 C 0.006 3.994 6 O -0.377 6.377 7 N -0.142 5.142 8 N -0.127 5.127 9 N -0.149 5.149 10 C -0.014 4.014 11 C -0.514 4.514 12 H 0.107 0.893 13 C -0.190 4.190 14 N -0.451 5.451 15 Si 0.803 3.197 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.177 1.177 19 C -0.220 4.220 20 C -0.049 4.049 21 C 0.003 3.997 22 O -0.327 6.327 23 C -0.071 4.071 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.255 0.745 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.986 -0.631 13.872 14.204 hybrid contribution 0.162 1.265 -0.492 1.367 sum 3.148 0.634 13.380 13.760 Atomic orbital electron populations 1.21704 0.95252 1.02554 1.00776 1.21769 0.96572 0.93760 1.03458 1.21282 0.95517 0.95601 0.82436 0.87108 1.22050 0.93445 0.97509 0.86440 1.86316 1.31187 1.85000 1.35217 1.49696 1.36554 1.20900 1.07091 1.81346 1.24225 1.22965 0.84158 1.75086 1.11778 1.04510 1.23483 1.19463 0.98099 0.95769 0.88051 1.18897 1.29922 1.10374 0.92208 0.89257 1.26698 0.95423 0.98949 0.97946 1.70163 1.34753 1.34152 1.06048 0.85223 0.79049 0.77852 0.77624 1.19109 1.20260 1.17736 1.21589 1.08352 0.95806 0.96267 1.19472 0.97639 0.94425 0.93323 1.22340 0.95231 0.92993 0.89128 1.87793 1.44650 1.47030 1.53258 1.22947 0.95694 0.89174 0.99291 0.91408 0.96151 0.90755 0.92650 0.87479 0.93744 0.93109 0.74481 0.91695 0.90057 0.89961 0.93521 0.94041 0.87596 0.93242 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.74 71.98 0.70 -3.54 16 2 C -0.12 -3.42 5.51 30.59 0.17 -3.25 16 3 C 0.15 4.93 2.78 44.99 0.13 5.06 16 4 H 0.11 3.24 6.80 -2.39 -0.02 3.22 16 5 C 0.09 2.35 6.71 71.98 0.48 2.84 16 6 O -0.57 -12.06 13.04 -148.98 -1.94 -14.00 16 7 N -0.35 -14.71 2.86 -311.28 -0.89 -15.60 16 8 N -0.15 -7.87 13.62 37.02 0.50 -7.36 16 9 N -0.28 -16.51 10.55 -52.52 -0.55 -17.07 16 10 C 0.12 6.57 6.72 39.67 0.27 6.83 16 11 C -0.48 -26.37 9.11 23.44 0.21 -26.16 16 12 H 0.09 4.57 7.30 -2.91 -0.02 4.55 16 13 C 0.02 1.31 5.49 85.18 0.47 1.77 16 14 N -0.82 -48.19 11.92 21.79 0.26 -47.93 16 15 Si 0.98 40.85 29.56 68.60 2.03 42.88 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 18 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 19 C -0.09 -3.92 6.37 42.25 0.27 -3.65 16 20 C -0.01 -0.33 5.48 29.85 0.16 -0.16 16 21 C 0.08 2.67 5.92 71.98 0.43 3.10 16 22 O -0.41 -12.29 10.70 -148.98 -1.59 -13.88 16 23 C 0.02 0.54 11.01 113.37 1.25 1.79 16 24 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.02 0.73 7.92 -2.39 -0.02 0.71 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.11 2.57 7.63 -2.39 -0.02 2.55 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.40 4.62 9.12 -74.06 -0.68 3.94 16 32 H 0.27 14.75 8.30 -92.71 -0.77 13.98 16 33 H 0.08 3.11 7.56 -2.38 -0.02 3.09 16 34 H 0.08 2.62 7.20 -2.39 -0.02 2.60 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -71.65 331.67 2.71 -68.93 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.37 Total: 19.40 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 4.53 Total: -15.37 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -0.68 Total: -87.96 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -3.54 Total: -27.88 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -71.65 2.71 -68.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.114 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds