Wall clock time and date at job start Mon Mar 30 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53000 * 109.47081 * 150.00312 * 3 2 1 6 6 C 1.50699 * 109.46791 * 270.00175 * 3 2 1 7 7 C 1.39015 * 126.77671 * 314.68576 * 6 3 2 8 8 C 1.41490 * 126.01785 * 0.02562 * 7 6 3 9 9 H 1.08000 * 119.99923 * 0.02562 * 8 7 6 10 10 C 1.39742 * 120.00135 * 180.02562 * 8 7 6 11 11 N 1.30987 * 119.99536 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00032 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47431 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47306 * 119.99682 * 12 10 8 15 15 H 1.48505 * 109.47275 * 239.99671 * 12 10 8 16 16 N 1.34843 * 107.95911 * 179.83831 * 7 6 3 17 17 N 1.28670 * 109.63469 * 0.43771 * 16 7 6 18 18 N 1.35021 * 126.76785 * 135.00092 * 6 3 2 19 19 C 1.46503 * 126.49448 * 359.97438 * 18 6 3 20 20 C 1.52996 * 109.46954 * 90.00231 * 19 18 6 21 21 C 1.53007 * 109.47041 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.47030 * 54.99355 * 21 20 19 23 23 C 1.52995 * 109.47322 * 174.99569 * 21 20 19 24 24 O 1.42898 * 109.46933 * 294.99553 * 21 20 19 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 28 28 H 1.08999 * 109.47013 * 60.00018 * 5 3 2 29 29 H 1.09000 * 109.46751 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.46630 * 299.99844 * 5 3 2 31 31 H 0.97000 * 119.99615 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.46984 * 209.99806 * 19 18 6 33 33 H 1.08990 * 109.47073 * 329.99703 * 19 18 6 34 34 H 1.09000 * 109.46928 * 299.99610 * 20 19 18 35 35 H 1.08995 * 109.47989 * 60.00157 * 20 19 18 36 36 H 1.09000 * 109.47243 * 59.99916 * 23 21 20 37 37 H 1.08997 * 109.47394 * 180.02562 * 23 21 20 38 38 H 1.09001 * 109.47205 * 299.99957 * 23 21 20 39 39 H 0.96698 * 114.00381 * 300.00270 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 3.3590 1.2631 0.7212 6 6 2.2146 1.7643 -1.4208 7 6 2.7503 1.0212 -2.4665 8 6 3.2064 -0.3159 -2.3888 9 1 3.1537 -0.8508 -1.4521 10 6 3.7251 -0.9443 -3.5241 11 7 3.7885 -0.2955 -4.6603 12 14 4.3266 -2.7098 -3.4217 13 1 4.1468 -3.2145 -2.0367 14 1 3.5462 -3.5539 -4.3618 15 1 5.7654 -2.7644 -3.7851 16 7 2.7548 1.7979 -3.5688 17 7 2.2751 2.9571 -3.2829 18 7 1.9188 2.9802 -1.9279 19 6 1.3354 4.1095 -1.1996 20 6 2.4551 4.9665 -0.6056 21 6 1.8457 6.1456 0.1556 22 1 1.1421 5.7729 0.9000 23 6 2.9576 6.9316 0.8533 24 8 1.1606 7.0013 -0.7611 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 4.0242 0.5692 0.2073 29 1 3.8026 2.2588 0.7208 30 1 3.2112 0.9312 1.7488 31 1 4.1482 -0.7319 -5.4484 32 1 0.7392 4.7138 -1.8833 33 1 0.6998 3.7351 -0.3972 34 1 3.0512 4.3622 0.0781 35 1 3.0907 5.3410 -1.4079 36 1 3.6612 7.3043 0.1089 37 1 2.5235 7.7713 1.3959 38 1 3.4802 6.2788 1.5525 39 1 1.7266 7.3702 -1.4530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:45 Heat of formation + Delta-G solvation = -17.913710 kcal Electronic energy + Delta-G solvation = -21548.170233 eV Core-core repulsion = 18299.837935 eV Total energy + Delta-G solvation = -3248.332298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.07700 -37.99227 -37.25316 -34.24127 -33.05735 -31.80823 -31.11150 -28.54673 -28.52794 -25.90450 -25.17590 -23.74077 -22.52376 -21.57020 -20.21279 -19.00391 -17.15353 -16.50999 -16.09964 -15.84020 -15.52105 -14.72262 -14.61913 -14.41856 -13.94166 -13.74639 -13.47802 -12.99760 -12.72856 -12.53267 -12.15342 -11.97129 -11.81694 -11.65654 -11.23512 -11.16529 -11.09382 -10.95960 -10.85813 -10.72843 -10.42754 -10.26823 -10.08061 -9.67742 -9.22446 -9.14541 -8.72032 -8.42601 -7.37476 -6.30944 -4.07036 2.79519 3.19963 3.26241 3.32319 3.56547 4.20733 4.26504 4.34749 4.45899 4.71189 4.87219 5.01277 5.15092 5.39305 5.40756 5.55943 5.59259 5.60973 5.64282 5.69543 5.72957 5.85494 5.91442 6.02797 6.06244 6.12065 6.18490 6.28968 6.36343 6.80224 6.98933 7.19831 7.30547 7.52632 7.58433 7.91398 8.19226 8.64633 8.90455 9.18712 10.24647 10.65810 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.005725 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.674305 B = 4889.558600 C = 5441.676903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.195 3.805 4 H 0.041 0.959 5 C -0.139 4.139 6 C -0.157 4.157 7 C 0.173 3.827 8 C -0.432 4.432 9 H 0.092 0.908 10 C 0.069 3.931 11 N -0.778 5.778 12 Si 0.905 3.095 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.278 1.278 16 N -0.233 5.233 17 N -0.126 5.126 18 N -0.376 5.376 19 C 0.143 3.857 20 C -0.166 4.166 21 C 0.105 3.895 22 H 0.099 0.901 23 C -0.184 4.184 24 O -0.565 6.565 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.270 0.730 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 7.907 11.566 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.135 3.865 4 H 0.059 0.941 5 C -0.197 4.197 6 C -0.287 4.287 7 C 0.044 3.956 8 C -0.468 4.468 9 H 0.110 0.890 10 C -0.149 4.149 11 N -0.405 5.405 12 Si 0.730 3.270 13 H -0.185 1.185 14 H -0.204 1.204 15 H -0.204 1.204 16 N -0.106 5.106 17 N -0.102 5.102 18 N -0.174 5.174 19 C 0.018 3.982 20 C -0.206 4.206 21 C 0.046 3.954 22 H 0.116 0.884 23 C -0.241 4.241 24 O -0.371 6.371 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.221 8.357 10.387 13.715 hybrid contribution 0.503 -0.918 0.571 1.192 sum -2.718 7.439 10.958 13.520 Atomic orbital electron populations 1.22622 0.82538 1.01922 0.98865 1.88014 1.18309 1.27199 1.94461 1.19717 0.94020 0.83760 0.89001 0.94077 1.21785 0.96665 1.02234 0.98972 1.21792 1.20118 0.88788 0.98011 1.18954 0.96525 0.94839 0.85320 1.18777 1.36728 0.94464 0.96856 0.89031 1.25861 0.94729 0.99245 0.95079 1.70048 1.33976 1.36407 1.00055 0.86319 0.78493 0.82955 0.79223 1.18544 1.20376 1.20412 1.75122 1.14596 0.97026 1.23815 1.81461 1.19778 1.18375 0.90620 1.49455 1.48684 1.09593 1.09639 1.21255 0.94757 0.86541 0.95604 1.22747 0.99151 0.97546 1.01112 1.21862 0.93982 0.88795 0.90783 0.88359 1.22483 0.99145 1.01046 1.01476 1.86555 1.40394 1.66110 1.44001 0.90245 0.94440 0.95354 0.90359 0.92338 0.92931 0.91974 0.89266 0.90814 0.90490 0.90683 0.92222 0.91867 0.91472 0.77591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.81 101.05 1.09 1.70 16 2 O -0.36 -7.26 8.81 -35.23 -0.31 -7.57 16 3 C 0.20 3.71 2.91 -27.88 -0.08 3.63 16 4 H 0.04 0.68 6.53 -51.93 -0.34 0.34 16 5 C -0.14 -2.36 9.54 37.16 0.35 -2.00 16 6 C -0.16 -3.63 6.03 -80.90 -0.49 -4.12 16 7 C 0.17 4.80 6.69 -85.02 -0.57 4.23 16 8 C -0.43 -11.99 8.66 -37.78 -0.33 -12.31 16 9 H 0.09 2.45 6.56 -52.49 -0.34 2.11 16 10 C 0.07 1.88 5.49 -17.35 -0.10 1.79 16 11 N -0.78 -22.40 11.92 55.54 0.66 -21.74 16 12 Si 0.90 20.15 29.56 -169.99 -5.02 15.13 16 13 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 N -0.23 -6.83 10.56 32.05 0.34 -6.50 16 17 N -0.13 -3.30 13.74 60.35 0.83 -2.47 16 18 N -0.38 -8.22 3.63 -56.18 -0.20 -8.43 16 19 C 0.14 2.28 6.16 -4.04 -0.02 2.25 16 20 C -0.17 -2.17 5.22 -26.73 -0.14 -2.31 16 21 C 0.11 1.08 3.59 -26.73 -0.10 0.99 16 22 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 23 C -0.18 -1.58 9.53 37.16 0.35 -1.23 16 24 O -0.56 -6.27 12.88 -35.23 -0.45 -6.72 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.08 1.52 7.79 -51.93 -0.40 1.11 16 29 H 0.06 0.91 7.86 -51.93 -0.41 0.50 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.27 7.13 8.30 -40.82 -0.34 6.79 16 32 H 0.09 1.41 7.82 -51.93 -0.41 1.00 16 33 H 0.07 1.05 7.03 -51.93 -0.37 0.68 16 34 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.38 3.13 9.05 45.56 0.41 3.54 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -33.62 329.07 -4.42 -38.04 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.20 Total: 2.69 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -0.02 Total: -7.40 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 1.63 Total: -39.13 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.76 Total: -14.30 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.62 -4.42 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.129 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds