Wall clock time and date at job start Mon Mar 30 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53000 * 109.47081 * 150.00312 * 3 2 1 6 6 C 1.50699 * 109.46791 * 270.00175 * 3 2 1 7 7 C 1.39015 * 126.77671 * 314.68576 * 6 3 2 8 8 C 1.41490 * 126.01785 * 0.02562 * 7 6 3 9 9 H 1.08000 * 119.99923 * 0.02562 * 8 7 6 10 10 C 1.39742 * 120.00135 * 180.02562 * 8 7 6 11 11 N 1.30987 * 119.99536 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00032 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47431 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47306 * 119.99682 * 12 10 8 15 15 H 1.48505 * 109.47275 * 239.99671 * 12 10 8 16 16 N 1.34843 * 107.95911 * 179.83831 * 7 6 3 17 17 N 1.28670 * 109.63469 * 0.43771 * 16 7 6 18 18 N 1.35021 * 126.76785 * 135.00092 * 6 3 2 19 19 C 1.46503 * 126.49448 * 359.97438 * 18 6 3 20 20 C 1.52996 * 109.46954 * 90.00231 * 19 18 6 21 21 C 1.53007 * 109.47041 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.47030 * 54.99355 * 21 20 19 23 23 C 1.52995 * 109.47322 * 174.99569 * 21 20 19 24 24 O 1.42898 * 109.46933 * 294.99553 * 21 20 19 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 28 28 H 1.08999 * 109.47013 * 60.00018 * 5 3 2 29 29 H 1.09000 * 109.46751 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.46630 * 299.99844 * 5 3 2 31 31 H 0.97000 * 119.99615 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.46984 * 209.99806 * 19 18 6 33 33 H 1.08990 * 109.47073 * 329.99703 * 19 18 6 34 34 H 1.09000 * 109.46928 * 299.99610 * 20 19 18 35 35 H 1.08995 * 109.47989 * 60.00157 * 20 19 18 36 36 H 1.09000 * 109.47243 * 59.99916 * 23 21 20 37 37 H 1.08997 * 109.47394 * 180.02562 * 23 21 20 38 38 H 1.09001 * 109.47205 * 299.99957 * 23 21 20 39 39 H 0.96698 * 114.00381 * 300.00270 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 3.3590 1.2631 0.7212 6 6 2.2146 1.7643 -1.4208 7 6 2.7503 1.0212 -2.4665 8 6 3.2064 -0.3159 -2.3888 9 1 3.1537 -0.8508 -1.4521 10 6 3.7251 -0.9443 -3.5241 11 7 3.7885 -0.2955 -4.6603 12 14 4.3266 -2.7098 -3.4217 13 1 4.1468 -3.2145 -2.0367 14 1 3.5462 -3.5539 -4.3618 15 1 5.7654 -2.7644 -3.7851 16 7 2.7548 1.7979 -3.5688 17 7 2.2751 2.9571 -3.2829 18 7 1.9188 2.9802 -1.9279 19 6 1.3354 4.1095 -1.1996 20 6 2.4551 4.9665 -0.6056 21 6 1.8457 6.1456 0.1556 22 1 1.1421 5.7729 0.9000 23 6 2.9576 6.9316 0.8533 24 8 1.1606 7.0013 -0.7611 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 4.0242 0.5692 0.2073 29 1 3.8026 2.2588 0.7208 30 1 3.2112 0.9312 1.7488 31 1 4.1482 -0.7319 -5.4484 32 1 0.7392 4.7138 -1.8833 33 1 0.6998 3.7351 -0.3972 34 1 3.0512 4.3622 0.0781 35 1 3.0907 5.3410 -1.4079 36 1 3.6612 7.3043 0.1089 37 1 2.5235 7.7713 1.3959 38 1 3.4802 6.2788 1.5525 39 1 1.7266 7.3702 -1.4530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:44 Heat of formation + Delta-G solvation = -44.310563 kcal Electronic energy + Delta-G solvation = -21549.314887 eV Core-core repulsion = 18299.837935 eV Total energy + Delta-G solvation = -3249.476952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95107 -38.92169 -38.77394 -35.83978 -34.86425 -33.22678 -32.37331 -30.37369 -29.79294 -27.24400 -27.00230 -25.11975 -24.12115 -22.51967 -22.08621 -20.68874 -19.02799 -17.55508 -17.43412 -17.19881 -16.82513 -16.53632 -16.12124 -15.88014 -15.42217 -14.90191 -14.87722 -14.32276 -14.15419 -13.88812 -13.35152 -13.24810 -13.03662 -12.87742 -12.84967 -12.77481 -12.72522 -12.36128 -12.27325 -11.97531 -11.79066 -11.69628 -11.55534 -11.27034 -11.04261 -10.83050 -10.46374 -10.23916 -9.35756 -8.27507 -6.12260 0.95671 1.42905 1.44060 1.60222 1.94729 2.34813 2.36425 3.05032 3.45224 3.59050 3.67929 3.84347 3.92741 4.01161 4.11550 4.28828 4.38726 4.42428 4.46103 4.54122 4.63976 4.66284 4.82153 4.87035 4.90714 4.96114 5.03481 5.13331 5.17851 5.26829 5.29680 5.44194 5.47634 5.60996 6.37028 6.50486 6.57264 6.80325 6.93864 7.16233 8.30214 8.72144 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.005725 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.674305 B = 4889.558600 C = 5441.676903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.190 3.810 4 H 0.080 0.920 5 C -0.135 4.135 6 C -0.118 4.118 7 C 0.127 3.873 8 C -0.457 4.457 9 H 0.093 0.907 10 C 0.017 3.983 11 N -0.830 5.830 12 Si 0.980 3.020 13 H -0.252 1.252 14 H -0.275 1.275 15 H -0.273 1.273 16 N -0.288 5.288 17 N -0.167 5.167 18 N -0.355 5.355 19 C 0.128 3.872 20 C -0.155 4.155 21 C 0.114 3.886 22 H 0.113 0.887 23 C -0.180 4.180 24 O -0.579 6.579 25 H 0.094 0.906 26 H 0.014 0.986 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.270 0.730 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 8.342 15.036 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.130 3.870 4 H 0.098 0.902 5 C -0.192 4.192 6 C -0.253 4.253 7 C -0.005 4.005 8 C -0.494 4.494 9 H 0.111 0.889 10 C -0.196 4.196 11 N -0.459 5.459 12 Si 0.802 3.198 13 H -0.175 1.175 14 H -0.201 1.201 15 H -0.198 1.198 16 N -0.158 5.158 17 N -0.143 5.143 18 N -0.152 5.152 19 C 0.006 3.994 20 C -0.194 4.194 21 C 0.055 3.945 22 H 0.131 0.869 23 C -0.237 4.237 24 O -0.387 6.387 25 H 0.112 0.888 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.993 8.872 13.846 16.923 hybrid contribution 0.570 -0.864 -0.305 1.079 sum -3.423 8.008 13.542 16.100 Atomic orbital electron populations 1.22839 0.80742 1.03335 0.99549 1.88000 1.20398 1.27562 1.94338 1.20082 0.96132 0.84420 0.86356 0.90181 1.21772 0.94713 1.02478 1.00268 1.22676 1.15210 0.88119 0.99266 1.19501 0.98666 0.95867 0.86509 1.18980 1.38060 0.95057 0.97254 0.88880 1.26768 0.94675 1.03689 0.94433 1.70202 1.36251 1.38476 1.00934 0.85183 0.77900 0.77222 0.79479 1.17489 1.20074 1.19836 1.75066 1.16937 0.98230 1.25595 1.81344 1.22333 1.17901 0.92684 1.49955 1.45724 1.10642 1.08844 1.21829 0.96210 0.85317 0.96014 1.22672 0.97813 0.98170 1.00756 1.21857 0.94639 0.87631 0.90377 0.86948 1.22439 0.98558 1.01246 1.01496 1.86532 1.41333 1.66154 1.44639 0.88796 0.96674 0.91461 0.93460 0.90906 0.89334 0.92004 0.89075 0.87810 0.90136 0.92362 0.92333 0.90917 0.90629 0.76392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 10.81 113.37 1.23 2.17 16 2 O -0.39 -14.52 8.81 -148.98 -1.31 -15.84 16 3 C 0.19 6.68 2.91 29.85 0.09 6.76 16 4 H 0.08 2.21 6.53 -2.39 -0.02 2.19 16 5 C -0.13 -4.17 9.54 71.98 0.69 -3.48 16 6 C -0.12 -5.39 6.03 42.25 0.26 -5.14 16 7 C 0.13 7.25 6.69 39.67 0.27 7.51 16 8 C -0.46 -26.10 8.66 23.44 0.20 -25.90 16 9 H 0.09 5.08 6.56 -2.91 -0.02 5.06 16 10 C 0.02 0.97 5.49 85.18 0.47 1.44 16 11 N -0.83 -50.28 11.92 21.80 0.26 -50.02 16 12 Si 0.98 42.62 29.56 68.60 2.03 44.64 16 13 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 14 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 N -0.29 -17.76 10.56 -52.52 -0.55 -18.32 16 17 N -0.17 -9.06 13.74 37.02 0.51 -8.55 16 18 N -0.36 -15.36 3.63 -331.65 -1.20 -16.57 16 19 C 0.13 3.78 6.16 86.38 0.53 4.31 16 20 C -0.15 -3.65 5.22 30.60 0.16 -3.49 16 21 C 0.11 1.97 3.59 30.60 0.11 2.08 16 22 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 23 C -0.18 -2.50 9.53 71.98 0.69 -1.81 16 24 O -0.58 -11.37 12.88 -148.98 -1.92 -13.29 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 1.48 8.09 -2.38 -0.02 1.46 16 28 H 0.05 1.77 7.79 -2.39 -0.02 1.75 16 29 H 0.07 2.01 7.86 -2.39 -0.02 1.99 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.27 15.10 8.30 -92.71 -0.77 14.33 16 32 H 0.09 2.73 7.82 -2.39 -0.02 2.71 16 33 H 0.10 2.50 7.03 -2.39 -0.02 2.48 16 34 H 0.08 1.87 7.86 -2.39 -0.02 1.85 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.39 5.74 9.05 -74.06 -0.67 5.07 16 Total: -1.00 -77.95 329.07 2.87 -75.09 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.38 Total: 18.40 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.68 Total: -15.55 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -0.99 Total: -93.45 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -3.23 Total: -29.13 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -77.95 2.87 -75.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.775 kcal (2) G-P(sol) polarization free energy of solvation -77.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds