Wall clock time and date at job start Mon Mar 30 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00404 * 2 1 4 4 H 1.08998 * 109.47128 * 329.99627 * 3 2 1 5 5 C 1.53000 * 109.47359 * 209.99346 * 3 2 1 6 6 C 1.50709 * 109.46958 * 89.99339 * 3 2 1 7 7 C 1.39008 * 126.76978 * 44.98047 * 6 3 2 8 8 C 1.41491 * 126.02659 * 359.97438 * 7 6 3 9 9 H 1.08002 * 119.99299 * 0.02562 * 8 7 6 10 10 C 1.39735 * 120.00588 * 180.02562 * 8 7 6 11 11 N 1.30983 * 119.99607 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00108 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47350 * 90.00302 * 12 10 8 14 14 H 1.48502 * 109.46830 * 209.99994 * 12 10 8 15 15 H 1.48498 * 109.47025 * 329.99575 * 12 10 8 16 16 N 1.34844 * 107.95678 * 179.97438 * 7 6 3 17 17 N 1.28665 * 109.63453 * 359.97438 * 16 7 6 18 18 N 1.35017 * 126.77055 * 224.97663 * 6 3 2 19 19 C 1.46498 * 126.49218 * 359.97438 * 18 6 3 20 20 C 1.53007 * 109.46848 * 90.00356 * 19 18 6 21 21 C 1.52997 * 109.47228 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.47256 * 305.00180 * 21 20 19 23 23 C 1.53000 * 109.47355 * 184.99872 * 21 20 19 24 24 O 1.42900 * 109.47161 * 64.99900 * 21 20 19 25 25 H 1.09006 * 109.46724 * 60.00096 * 1 2 3 26 26 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47380 * 300.00494 * 1 2 3 28 28 H 1.08998 * 109.47230 * 300.00219 * 5 3 2 29 29 H 1.09004 * 109.46893 * 60.00189 * 5 3 2 30 30 H 1.09004 * 109.47103 * 179.97438 * 5 3 2 31 31 H 0.96999 * 119.99816 * 179.97438 * 11 10 8 32 32 H 1.09007 * 109.47330 * 209.99718 * 19 18 6 33 33 H 1.08998 * 109.47468 * 330.00426 * 19 18 6 34 34 H 1.08996 * 109.47036 * 299.99575 * 20 19 18 35 35 H 1.08998 * 109.47029 * 59.99802 * 20 19 18 36 36 H 1.08999 * 109.47146 * 59.99928 * 23 21 20 37 37 H 1.09000 * 109.47288 * 179.97438 * 23 21 20 38 38 H 1.08998 * 109.46766 * 300.00219 * 23 21 20 39 39 H 0.96694 * 114.00209 * 59.99733 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 3.3590 1.2631 -0.7211 6 6 2.2145 1.7643 1.4209 7 6 2.7441 1.0192 2.4680 8 6 3.1930 -0.3205 2.3924 9 1 3.1398 -0.8557 1.4558 10 6 3.7051 -0.9512 3.5293 11 7 3.7701 -0.3019 4.6650 12 14 4.2971 -2.7201 3.4294 13 1 5.7385 -2.7404 3.0732 14 1 4.1029 -3.3820 4.7445 15 1 3.5203 -3.4441 2.3914 16 7 2.7548 1.7980 3.5688 17 7 2.2764 2.9576 3.2825 18 7 1.9191 2.9804 1.9278 19 6 1.3372 4.1102 1.1990 20 6 -0.1888 4.0407 1.2846 21 6 -0.7966 5.2209 0.5240 22 1 -0.3818 6.1529 0.9080 23 6 -2.3149 5.2222 0.7133 24 8 -0.4900 5.1002 -0.8665 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8898 28 1 4.0242 0.5692 -0.2072 29 1 3.2113 0.9312 -1.7488 30 1 3.8022 2.2590 -0.7215 31 1 4.1252 -0.7398 5.4544 32 1 1.6836 5.0447 1.6407 33 1 1.6450 4.0660 0.1543 34 1 -0.5353 3.1063 0.8430 35 1 -0.4966 4.0849 2.3293 36 1 -2.5487 5.3143 1.7739 37 1 -2.7478 6.0634 0.1718 38 1 -2.7296 4.2902 0.3293 39 1 -0.8291 4.2923 -1.2753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:47 Heat of formation + Delta-G solvation = -17.986464 kcal Electronic energy + Delta-G solvation = -21693.563992 eV Core-core repulsion = 18445.228539 eV Total energy + Delta-G solvation = -3248.335453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07977 -38.02922 -37.26032 -34.23688 -33.04391 -31.89596 -31.06964 -28.55623 -28.50023 -25.93358 -25.20336 -23.74815 -22.50209 -21.55568 -20.21843 -19.04598 -17.15541 -16.52124 -16.08087 -15.87304 -15.55101 -14.71618 -14.65057 -14.38082 -13.95816 -13.72330 -13.51212 -13.00023 -12.75989 -12.56497 -12.12627 -11.95371 -11.84961 -11.61945 -11.20369 -11.19381 -11.07816 -10.99379 -10.92836 -10.68551 -10.47779 -10.31059 -10.06214 -9.69683 -9.21566 -9.14932 -8.71620 -8.41845 -7.37577 -6.30651 -4.06865 2.79239 3.21044 3.26023 3.31227 3.57239 4.20627 4.22211 4.34692 4.44867 4.71259 4.86585 4.96265 5.17653 5.38589 5.42940 5.52772 5.56990 5.61061 5.64264 5.70242 5.71956 5.83106 5.89040 6.01627 6.05902 6.08237 6.19878 6.29199 6.38067 6.82388 6.99027 7.19910 7.30523 7.46911 7.58614 7.91164 8.19412 8.64376 8.90629 9.18784 10.24632 10.66061 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024156 B = 0.005867 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.854082 B = 4771.413841 C = 5279.400648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.196 3.804 4 H 0.042 0.958 5 C -0.140 4.140 6 C -0.156 4.156 7 C 0.173 3.827 8 C -0.433 4.433 9 H 0.091 0.909 10 C 0.070 3.930 11 N -0.778 5.778 12 Si 0.905 3.095 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.263 1.263 16 N -0.232 5.232 17 N -0.127 5.127 18 N -0.376 5.376 19 C 0.142 3.858 20 C -0.166 4.166 21 C 0.105 3.895 22 H 0.101 0.899 23 C -0.184 4.184 24 O -0.564 6.564 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.270 0.730 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 5.701 -10.415 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.135 3.865 4 H 0.060 0.940 5 C -0.198 4.198 6 C -0.286 4.286 7 C 0.044 3.956 8 C -0.468 4.468 9 H 0.109 0.891 10 C -0.149 4.149 11 N -0.405 5.405 12 Si 0.730 3.270 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.187 1.187 16 N -0.105 5.105 17 N -0.104 5.104 18 N -0.174 5.174 19 C 0.018 3.982 20 C -0.205 4.205 21 C 0.045 3.955 22 H 0.119 0.881 23 C -0.241 4.241 24 O -0.369 6.369 25 H 0.046 0.954 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.141 6.892 -8.742 13.791 hybrid contribution -0.420 -1.576 -0.846 1.837 sum -8.562 5.316 -9.587 13.910 Atomic orbital electron populations 1.22608 0.82717 1.01879 0.98668 1.88022 1.18167 1.27261 1.94442 1.19717 0.94089 0.83679 0.88973 0.93982 1.21787 0.96649 1.02373 0.98948 1.21788 1.20157 0.88719 0.97949 1.18946 0.96626 0.94735 0.85329 1.18738 1.37098 0.94240 0.96772 0.89071 1.25856 0.94680 0.99273 0.95083 1.70036 1.33922 1.36509 1.00038 0.86370 0.79489 0.82965 0.78126 1.19890 1.20718 1.18749 1.75120 1.14574 0.96974 1.23869 1.81453 1.19769 1.18459 0.90672 1.49446 1.48330 1.09886 1.09736 1.21273 0.92017 0.88668 0.96282 1.22740 0.96252 0.99066 1.02453 1.21889 0.93913 0.98501 0.81164 0.88076 1.22481 0.96395 1.02428 1.02825 1.86573 1.80888 1.46516 1.22968 0.95422 0.90307 0.94578 0.90413 0.92924 0.92198 0.91920 0.89898 0.89860 0.91384 0.90137 0.91426 0.91819 0.92324 0.77905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.81 101.05 1.09 1.70 16 2 O -0.36 -7.14 8.79 -35.23 -0.31 -7.45 16 3 C 0.20 3.70 2.82 -27.88 -0.08 3.62 16 4 H 0.04 0.69 6.87 -51.93 -0.36 0.33 16 5 C -0.14 -2.43 9.54 37.16 0.35 -2.07 16 6 C -0.16 -3.61 6.04 -80.90 -0.49 -4.10 16 7 C 0.17 4.79 6.69 -85.02 -0.57 4.23 16 8 C -0.43 -12.00 8.69 -37.78 -0.33 -12.32 16 9 H 0.09 2.44 6.59 -52.49 -0.35 2.09 16 10 C 0.07 1.89 5.49 -17.35 -0.10 1.79 16 11 N -0.78 -22.41 11.92 55.54 0.66 -21.75 16 12 Si 0.91 20.17 29.56 -169.99 -5.02 15.14 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 16 N -0.23 -6.83 10.55 32.05 0.34 -6.49 16 17 N -0.13 -3.33 13.74 60.35 0.83 -2.50 16 18 N -0.38 -8.22 3.63 -56.17 -0.20 -8.43 16 19 C 0.14 2.26 6.00 -4.04 -0.02 2.23 16 20 C -0.17 -2.17 5.22 -26.73 -0.14 -2.31 16 21 C 0.10 1.07 3.59 -26.73 -0.10 0.98 16 22 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 23 C -0.18 -1.59 9.53 37.16 0.35 -1.23 16 24 O -0.56 -5.94 12.88 -35.23 -0.45 -6.39 16 25 H 0.03 0.35 8.09 -51.93 -0.42 -0.07 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.53 7.87 -51.93 -0.41 1.12 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.27 7.17 8.30 -40.82 -0.34 6.83 16 32 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.08 1.22 7.12 -51.93 -0.37 0.85 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.37 2.82 9.04 45.56 0.41 3.23 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -33.52 330.24 -4.48 -38.00 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.27 Total: 2.38 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.02 Total: -7.49 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 1.63 Total: -39.17 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.76 Total: -13.84 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.52 -4.48 -38.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.011 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds