Wall clock time and date at job start Mon Mar 30 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00404 * 2 1 4 4 H 1.08998 * 109.47128 * 329.99627 * 3 2 1 5 5 C 1.53000 * 109.47359 * 209.99346 * 3 2 1 6 6 C 1.50709 * 109.46958 * 89.99339 * 3 2 1 7 7 C 1.39008 * 126.76978 * 44.98047 * 6 3 2 8 8 C 1.41491 * 126.02659 * 359.97438 * 7 6 3 9 9 H 1.08002 * 119.99299 * 0.02562 * 8 7 6 10 10 C 1.39735 * 120.00588 * 180.02562 * 8 7 6 11 11 N 1.30983 * 119.99607 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00108 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47350 * 90.00302 * 12 10 8 14 14 H 1.48502 * 109.46830 * 209.99994 * 12 10 8 15 15 H 1.48498 * 109.47025 * 329.99575 * 12 10 8 16 16 N 1.34844 * 107.95678 * 179.97438 * 7 6 3 17 17 N 1.28665 * 109.63453 * 359.97438 * 16 7 6 18 18 N 1.35017 * 126.77055 * 224.97663 * 6 3 2 19 19 C 1.46498 * 126.49218 * 359.97438 * 18 6 3 20 20 C 1.53007 * 109.46848 * 90.00356 * 19 18 6 21 21 C 1.52997 * 109.47228 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.47256 * 305.00180 * 21 20 19 23 23 C 1.53000 * 109.47355 * 184.99872 * 21 20 19 24 24 O 1.42900 * 109.47161 * 64.99900 * 21 20 19 25 25 H 1.09006 * 109.46724 * 60.00096 * 1 2 3 26 26 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47380 * 300.00494 * 1 2 3 28 28 H 1.08998 * 109.47230 * 300.00219 * 5 3 2 29 29 H 1.09004 * 109.46893 * 60.00189 * 5 3 2 30 30 H 1.09004 * 109.47103 * 179.97438 * 5 3 2 31 31 H 0.96999 * 119.99816 * 179.97438 * 11 10 8 32 32 H 1.09007 * 109.47330 * 209.99718 * 19 18 6 33 33 H 1.08998 * 109.47468 * 330.00426 * 19 18 6 34 34 H 1.08996 * 109.47036 * 299.99575 * 20 19 18 35 35 H 1.08998 * 109.47029 * 59.99802 * 20 19 18 36 36 H 1.08999 * 109.47146 * 59.99928 * 23 21 20 37 37 H 1.09000 * 109.47288 * 179.97438 * 23 21 20 38 38 H 1.08998 * 109.46766 * 300.00219 * 23 21 20 39 39 H 0.96694 * 114.00209 * 59.99733 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 3.3590 1.2631 -0.7211 6 6 2.2145 1.7643 1.4209 7 6 2.7441 1.0192 2.4680 8 6 3.1930 -0.3205 2.3924 9 1 3.1398 -0.8557 1.4558 10 6 3.7051 -0.9512 3.5293 11 7 3.7701 -0.3019 4.6650 12 14 4.2971 -2.7201 3.4294 13 1 5.7385 -2.7404 3.0732 14 1 4.1029 -3.3820 4.7445 15 1 3.5203 -3.4441 2.3914 16 7 2.7548 1.7980 3.5688 17 7 2.2764 2.9576 3.2825 18 7 1.9191 2.9804 1.9278 19 6 1.3372 4.1102 1.1990 20 6 -0.1888 4.0407 1.2846 21 6 -0.7966 5.2209 0.5240 22 1 -0.3818 6.1529 0.9080 23 6 -2.3149 5.2222 0.7133 24 8 -0.4900 5.1002 -0.8665 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8898 28 1 4.0242 0.5692 -0.2072 29 1 3.2113 0.9312 -1.7488 30 1 3.8022 2.2590 -0.7215 31 1 4.1252 -0.7398 5.4544 32 1 1.6836 5.0447 1.6407 33 1 1.6450 4.0660 0.1543 34 1 -0.5353 3.1063 0.8430 35 1 -0.4966 4.0849 2.3293 36 1 -2.5487 5.3143 1.7739 37 1 -2.7478 6.0634 0.1718 38 1 -2.7296 4.2902 0.3293 39 1 -0.8291 4.2923 -1.2753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:46 Heat of formation + Delta-G solvation = -44.246652 kcal Electronic energy + Delta-G solvation = -21694.702720 eV Core-core repulsion = 18445.228539 eV Total energy + Delta-G solvation = -3249.474180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95233 -38.95258 -38.75627 -35.83008 -34.84476 -33.30112 -32.32910 -30.37910 -29.78360 -27.24643 -27.02009 -25.15456 -24.07549 -22.50857 -22.09229 -20.74120 -19.02377 -17.52866 -17.34385 -17.27710 -16.85779 -16.54041 -16.11335 -15.84667 -15.42605 -15.06111 -14.64021 -14.36941 -14.20471 -13.91703 -13.33975 -13.22183 -13.01954 -12.94045 -12.81082 -12.77102 -12.73654 -12.41449 -12.22336 -12.01369 -11.88930 -11.68753 -11.57457 -11.23932 -11.02487 -10.83546 -10.45150 -10.23419 -9.35964 -8.27298 -6.12167 0.95374 1.43903 1.44489 1.58636 1.95150 2.34892 2.36508 3.05114 3.43746 3.58931 3.69708 3.83978 3.90259 4.02675 4.09148 4.27182 4.39013 4.41108 4.45479 4.54726 4.59216 4.67251 4.83948 4.87056 4.88868 4.95059 5.02514 5.13207 5.15310 5.25141 5.28978 5.42258 5.47432 5.60944 6.37545 6.51377 6.57080 6.83559 6.93941 7.16234 8.30089 8.72146 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024156 B = 0.005867 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.854082 B = 4771.413841 C = 5279.400648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.192 3.808 4 H 0.082 0.918 5 C -0.137 4.137 6 C -0.117 4.117 7 C 0.127 3.873 8 C -0.458 4.458 9 H 0.093 0.907 10 C 0.018 3.982 11 N -0.829 5.829 12 Si 0.980 3.020 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.255 1.255 16 N -0.288 5.288 17 N -0.168 5.168 18 N -0.356 5.356 19 C 0.126 3.874 20 C -0.154 4.154 21 C 0.117 3.883 22 H 0.104 0.896 23 C -0.180 4.180 24 O -0.572 6.572 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.015 0.985 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.270 0.730 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 5.957 -13.678 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.132 3.868 4 H 0.100 0.900 5 C -0.195 4.195 6 C -0.252 4.252 7 C -0.005 4.005 8 C -0.494 4.494 9 H 0.111 0.889 10 C -0.195 4.195 11 N -0.458 5.458 12 Si 0.802 3.198 13 H -0.192 1.192 14 H -0.204 1.204 15 H -0.178 1.178 16 N -0.158 5.158 17 N -0.143 5.143 18 N -0.152 5.152 19 C 0.005 3.995 20 C -0.193 4.193 21 C 0.057 3.943 22 H 0.122 0.878 23 C -0.237 4.237 24 O -0.380 6.380 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.559 7.213 -12.004 16.956 hybrid contribution -0.139 -1.478 -0.069 1.486 sum -9.698 5.735 -12.073 16.514 Atomic orbital electron populations 1.22840 0.80736 1.03264 0.99602 1.88005 1.20457 1.27427 1.94331 1.20036 0.96003 0.84473 0.86280 0.90039 1.21778 0.94979 1.02335 1.00374 1.22676 1.15240 0.88080 0.99208 1.19495 0.98746 0.95771 0.86525 1.18950 1.38439 0.94847 0.97189 0.88885 1.26764 0.94597 1.03748 0.94430 1.70193 1.36195 1.38554 1.00892 0.85235 0.79073 0.77269 0.78214 1.19151 1.20372 1.17833 1.75064 1.16892 0.98189 1.25664 1.81333 1.22284 1.17982 0.92744 1.49948 1.45485 1.10863 1.08906 1.21858 0.93921 0.86943 0.96787 1.22652 0.93794 1.00774 1.02116 1.21759 0.94748 0.96929 0.80838 0.87785 1.22436 0.95000 1.03292 1.03011 1.86559 1.81166 1.47652 1.22622 0.91262 0.89006 0.96582 0.93435 0.89293 0.91247 0.91996 0.88984 0.87369 0.91246 0.91865 0.91575 0.90790 0.91605 0.76222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.81 113.37 1.23 2.13 16 2 O -0.38 -14.27 8.79 -148.98 -1.31 -15.58 16 3 C 0.19 6.75 2.82 29.85 0.08 6.83 16 4 H 0.08 2.23 6.87 -2.39 -0.02 2.22 16 5 C -0.14 -4.37 9.54 71.98 0.69 -3.69 16 6 C -0.12 -5.36 6.04 42.26 0.26 -5.11 16 7 C 0.13 7.25 6.69 39.67 0.27 7.52 16 8 C -0.46 -26.16 8.69 23.43 0.20 -25.96 16 9 H 0.09 5.07 6.59 -2.91 -0.02 5.05 16 10 C 0.02 0.99 5.49 85.18 0.47 1.46 16 11 N -0.83 -50.27 11.92 21.79 0.26 -50.01 16 12 Si 0.98 42.62 29.56 68.60 2.03 44.65 16 13 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 16 N -0.29 -17.75 10.55 -52.52 -0.55 -18.31 16 17 N -0.17 -9.10 13.74 37.02 0.51 -8.59 16 18 N -0.36 -15.39 3.63 -331.62 -1.20 -16.59 16 19 C 0.13 3.73 6.00 86.38 0.52 4.25 16 20 C -0.15 -3.67 5.22 30.60 0.16 -3.51 16 21 C 0.12 2.02 3.59 30.59 0.11 2.13 16 22 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 23 C -0.18 -2.55 9.53 71.98 0.69 -1.86 16 24 O -0.57 -9.63 12.88 -148.98 -1.92 -11.55 16 25 H 0.07 1.40 8.09 -2.38 -0.02 1.38 16 26 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 1.82 7.87 -2.39 -0.02 1.80 16 29 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.27 15.15 8.30 -92.71 -0.77 14.38 16 32 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.11 2.72 7.12 -2.39 -0.02 2.71 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.39 4.00 9.04 -74.06 -0.67 3.33 16 Total: -1.00 -77.68 330.24 2.85 -74.83 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.38 Total: 16.96 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.66 Total: -15.81 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -0.99 Total: -93.50 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -3.23 Total: -27.13 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -77.68 2.85 -74.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.587 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds