Wall clock time and date at job start Mon Mar 30 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46561 * 2 1 4 4 H 1.09001 * 109.47158 * 304.99525 * 3 2 1 5 5 C 1.52999 * 109.47702 * 65.00110 * 3 2 1 6 6 O 1.42890 * 109.47285 * 184.99897 * 5 3 2 7 7 N 1.46498 * 109.46694 * 185.00352 * 3 2 1 8 8 N 1.40125 * 126.49156 * 300.01788 * 7 3 2 9 9 N 1.28676 * 108.93787 * 179.97438 * 8 7 3 10 10 C 1.34840 * 109.63083 * 359.73058 * 9 8 7 11 11 C 1.41493 * 126.02156 * 180.27870 * 10 9 8 12 12 H 1.07997 * 120.00630 * 175.08557 * 11 10 9 13 13 C 1.39745 * 119.99564 * 355.07781 * 11 10 9 14 14 N 1.30981 * 120.00225 * 6.03495 * 13 11 10 15 15 Si 1.86799 * 119.99791 * 186.03515 * 13 11 10 16 16 H 1.48495 * 109.47483 * 94.97930 * 15 13 11 17 17 H 1.48495 * 109.47177 * 214.98312 * 15 13 11 18 18 H 1.48505 * 109.47083 * 334.98102 * 15 13 11 19 19 C 1.35024 * 126.49511 * 120.00206 * 7 3 2 20 20 C 1.50692 * 126.77330 * 0.02562 * 19 7 3 21 21 H 1.09008 * 109.47074 * 345.00072 * 20 19 7 22 22 C 1.52995 * 109.47556 * 105.00207 * 20 19 7 23 23 O 1.42898 * 109.47438 * 225.00663 * 20 19 7 24 24 C 1.42897 * 114.00343 * 89.99373 * 23 20 19 25 25 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47189 * 299.99775 * 1 2 3 27 27 H 1.08995 * 109.47401 * 60.00470 * 1 2 3 28 28 H 1.08999 * 109.46759 * 240.00066 * 2 1 3 29 29 H 1.08995 * 109.46875 * 119.99514 * 2 1 3 30 30 H 1.09003 * 109.46662 * 304.99725 * 5 3 2 31 31 H 1.08997 * 109.47084 * 64.99457 * 5 3 2 32 32 H 0.96705 * 114.00133 * 180.02562 * 6 5 3 33 33 H 0.97000 * 120.00131 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47074 * 59.99622 * 22 20 19 35 35 H 1.08993 * 109.47479 * 180.02562 * 22 20 19 36 36 H 1.09002 * 109.46918 * 300.00396 * 22 20 19 37 37 H 1.08995 * 109.47681 * 300.00385 * 24 23 20 38 38 H 1.08998 * 109.47286 * 60.00684 * 24 23 20 39 39 H 1.09004 * 109.47331 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1267 1.3073 6 8 2.0088 3.5050 1.2591 7 7 3.4999 1.4443 -0.1205 8 7 4.4100 0.8537 0.7663 9 7 5.6052 1.0586 0.3361 10 6 5.5585 1.7609 -0.8140 11 6 6.6722 2.1705 -1.5847 12 1 6.5205 2.6624 -2.5341 13 6 7.9686 1.9384 -1.1174 14 7 8.1559 1.2388 -0.0261 15 14 9.4343 2.6261 -2.0491 16 1 9.8330 3.9270 -1.4543 17 1 10.5692 1.6726 -1.9600 18 1 9.0660 2.8255 -3.4738 19 6 4.2236 2.0152 -1.1072 20 6 3.6894 2.7727 -2.2952 21 1 2.6219 2.5781 -2.4002 22 6 3.9165 4.2716 -2.0887 23 8 4.3697 2.3463 -3.4773 24 6 3.7450 1.2470 -4.1430 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.5562 2.0471 1.4400 31 1 2.1407 1.6421 2.1426 32 1 1.7824 4.0020 2.0572 33 1 9.0558 1.0774 0.2981 34 1 4.9838 4.4662 -1.9836 35 1 3.5297 4.8195 -2.9478 36 1 3.3975 4.5968 -1.1870 37 1 3.7028 0.3909 -3.4697 38 1 2.7338 1.5277 -4.4376 39 1 4.3220 0.9835 -5.0294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:16 Heat of formation + Delta-G solvation = -11.156770 kcal Electronic energy + Delta-G solvation = -22076.429089 eV Core-core repulsion = 18828.389793 eV Total energy + Delta-G solvation = -3248.039295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.07472 -37.32162 -37.15137 -34.90541 -33.14764 -31.97395 -30.73321 -28.45135 -27.68267 -25.84356 -24.97226 -24.10546 -22.45671 -21.69296 -19.48907 -18.96355 -17.33717 -16.98743 -16.01803 -15.75318 -14.97485 -14.67304 -14.51458 -14.38508 -13.93638 -13.73041 -13.08271 -12.93721 -12.81200 -12.48570 -11.96141 -11.78562 -11.63764 -11.57246 -11.26362 -11.09667 -11.06060 -10.95442 -10.72844 -10.59279 -10.28742 -10.07756 -9.85241 -9.59683 -9.15823 -9.05164 -8.64049 -8.34087 -7.27611 -6.24110 -3.98368 2.88997 3.25682 3.30253 3.35588 3.56875 4.20881 4.26788 4.42481 4.54162 4.94380 5.05577 5.16389 5.29325 5.36516 5.42141 5.53789 5.67959 5.69596 5.75128 5.78604 5.86134 5.93806 5.95245 6.09389 6.14602 6.16988 6.30442 6.45283 6.48394 6.95477 7.08273 7.28855 7.39042 7.66084 7.74657 7.99313 8.26294 8.73355 8.98967 9.26754 10.33196 10.73216 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020098 B = 0.006982 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.871732 B = 4009.495526 C = 4451.652292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.090 0.910 5 C 0.069 3.931 6 O -0.562 6.562 7 N -0.363 5.363 8 N -0.129 5.129 9 N -0.233 5.233 10 C 0.172 3.828 11 C -0.435 4.435 12 H 0.092 0.908 13 C 0.070 3.930 14 N -0.780 5.780 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.263 1.263 19 C -0.142 4.142 20 C 0.196 3.804 21 H 0.039 0.961 22 C -0.138 4.138 23 O -0.363 6.363 24 C 0.038 3.962 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.375 0.625 33 H 0.269 0.731 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.027 0.973 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.086 1.634 -1.979 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.064 3.936 4 H 0.108 0.892 5 C -0.010 4.010 6 O -0.367 6.367 7 N -0.160 5.160 8 N -0.105 5.105 9 N -0.106 5.106 10 C 0.042 3.958 11 C -0.471 4.471 12 H 0.110 0.890 13 C -0.148 4.148 14 N -0.407 5.407 15 Si 0.729 3.271 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.273 4.273 20 C 0.136 3.864 21 H 0.057 0.943 22 C -0.196 4.196 23 O -0.280 6.280 24 C -0.059 4.059 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.221 0.779 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.353 0.633 -1.189 13.420 hybrid contribution -0.002 0.752 -0.586 0.953 sum -13.354 1.385 -1.775 13.543 Atomic orbital electron populations 1.21834 0.95025 1.02111 1.01907 1.21800 0.95657 0.95229 1.04075 1.20972 0.78488 0.96159 0.98006 0.89174 1.22584 0.97788 0.82735 0.97932 1.86565 1.85469 1.21176 1.43467 1.49333 1.04756 1.42166 1.19783 1.81379 0.93635 1.20250 1.15230 1.75100 1.09416 1.14771 1.11270 1.18908 0.90344 0.95374 0.91145 1.18756 0.87938 1.35286 1.05122 0.89008 1.25840 1.00134 0.94061 0.94762 1.70046 1.22451 1.29364 1.18879 0.86382 0.80858 0.79040 0.80808 1.20041 1.20781 1.18734 1.21758 0.92961 1.14628 0.97945 1.19721 0.92130 0.92986 0.81565 0.94306 1.21767 1.04209 0.93089 1.00510 1.88016 1.52315 1.49250 1.38450 1.22606 0.96258 0.90201 0.96847 0.92150 0.92384 0.92554 0.90963 0.90374 0.92742 0.92365 0.77884 0.92075 0.90572 0.93253 0.91581 0.94538 0.95431 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.13 16 2 C -0.13 -1.81 5.67 -26.73 -0.15 -1.96 16 3 C 0.17 2.80 2.82 -67.93 -0.19 2.61 16 4 H 0.09 1.42 6.52 -51.93 -0.34 1.08 16 5 C 0.07 0.99 6.48 37.16 0.24 1.23 16 6 O -0.56 -8.74 13.60 -35.23 -0.48 -9.22 16 7 N -0.36 -8.13 3.23 -49.74 -0.16 -8.30 16 8 N -0.13 -3.38 13.62 60.35 0.82 -2.56 16 9 N -0.23 -6.95 10.58 32.05 0.34 -6.61 16 10 C 0.17 4.89 6.69 -85.02 -0.57 4.32 16 11 C -0.44 -12.39 8.76 -37.78 -0.33 -12.72 16 12 H 0.09 2.54 6.61 -52.49 -0.35 2.19 16 13 C 0.07 1.95 5.49 -17.35 -0.10 1.85 16 14 N -0.78 -22.87 11.95 55.54 0.66 -22.21 16 15 Si 0.90 20.63 29.56 -169.99 -5.03 15.60 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 19 C -0.14 -3.44 6.04 -80.90 -0.49 -3.92 16 20 C 0.20 3.98 2.89 -27.89 -0.08 3.90 16 21 H 0.04 0.70 6.30 -51.92 -0.33 0.37 16 22 C -0.14 -2.60 9.54 37.16 0.35 -2.24 16 23 O -0.36 -7.55 8.69 -35.23 -0.31 -7.86 16 24 C 0.04 0.64 10.81 101.05 1.09 1.73 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.58 6.34 -51.93 -0.33 0.26 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.38 3.92 9.12 45.56 0.42 4.33 16 33 H 0.27 7.25 8.30 -40.82 -0.34 6.91 16 34 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -34.92 326.47 -4.13 -39.05 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.04 Total: 3.51 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 0.14 Total: -6.33 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 1.66 Total: -39.67 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.79 Total: -17.07 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.92 -4.13 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.893 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds