Wall clock time and date at job start Mon Mar 30 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46561 * 2 1 4 4 H 1.09001 * 109.47158 * 304.99525 * 3 2 1 5 5 C 1.52999 * 109.47702 * 65.00110 * 3 2 1 6 6 O 1.42890 * 109.47285 * 184.99897 * 5 3 2 7 7 N 1.46498 * 109.46694 * 185.00352 * 3 2 1 8 8 N 1.40125 * 126.49156 * 300.01788 * 7 3 2 9 9 N 1.28676 * 108.93787 * 179.97438 * 8 7 3 10 10 C 1.34840 * 109.63083 * 359.73058 * 9 8 7 11 11 C 1.41493 * 126.02156 * 180.27870 * 10 9 8 12 12 H 1.07997 * 120.00630 * 175.08557 * 11 10 9 13 13 C 1.39745 * 119.99564 * 355.07781 * 11 10 9 14 14 N 1.30981 * 120.00225 * 6.03495 * 13 11 10 15 15 Si 1.86799 * 119.99791 * 186.03515 * 13 11 10 16 16 H 1.48495 * 109.47483 * 94.97930 * 15 13 11 17 17 H 1.48495 * 109.47177 * 214.98312 * 15 13 11 18 18 H 1.48505 * 109.47083 * 334.98102 * 15 13 11 19 19 C 1.35024 * 126.49511 * 120.00206 * 7 3 2 20 20 C 1.50692 * 126.77330 * 0.02562 * 19 7 3 21 21 H 1.09008 * 109.47074 * 345.00072 * 20 19 7 22 22 C 1.52995 * 109.47556 * 105.00207 * 20 19 7 23 23 O 1.42898 * 109.47438 * 225.00663 * 20 19 7 24 24 C 1.42897 * 114.00343 * 89.99373 * 23 20 19 25 25 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47189 * 299.99775 * 1 2 3 27 27 H 1.08995 * 109.47401 * 60.00470 * 1 2 3 28 28 H 1.08999 * 109.46759 * 240.00066 * 2 1 3 29 29 H 1.08995 * 109.46875 * 119.99514 * 2 1 3 30 30 H 1.09003 * 109.46662 * 304.99725 * 5 3 2 31 31 H 1.08997 * 109.47084 * 64.99457 * 5 3 2 32 32 H 0.96705 * 114.00133 * 180.02562 * 6 5 3 33 33 H 0.97000 * 120.00131 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47074 * 59.99622 * 22 20 19 35 35 H 1.08993 * 109.47479 * 180.02562 * 22 20 19 36 36 H 1.09002 * 109.46918 * 300.00396 * 22 20 19 37 37 H 1.08995 * 109.47681 * 300.00385 * 24 23 20 38 38 H 1.08998 * 109.47286 * 60.00684 * 24 23 20 39 39 H 1.09004 * 109.47331 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1267 1.3073 6 8 2.0088 3.5050 1.2591 7 7 3.4999 1.4443 -0.1205 8 7 4.4100 0.8537 0.7663 9 7 5.6052 1.0586 0.3361 10 6 5.5585 1.7609 -0.8140 11 6 6.6722 2.1705 -1.5847 12 1 6.5205 2.6624 -2.5341 13 6 7.9686 1.9384 -1.1174 14 7 8.1559 1.2388 -0.0261 15 14 9.4343 2.6261 -2.0491 16 1 9.8330 3.9270 -1.4543 17 1 10.5692 1.6726 -1.9600 18 1 9.0660 2.8255 -3.4738 19 6 4.2236 2.0152 -1.1072 20 6 3.6894 2.7727 -2.2952 21 1 2.6219 2.5781 -2.4002 22 6 3.9165 4.2716 -2.0887 23 8 4.3697 2.3463 -3.4773 24 6 3.7450 1.2470 -4.1430 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.5562 2.0471 1.4400 31 1 2.1407 1.6421 2.1426 32 1 1.7824 4.0020 2.0572 33 1 9.0558 1.0774 0.2981 34 1 4.9838 4.4662 -1.9836 35 1 3.5297 4.8195 -2.9478 36 1 3.3975 4.5968 -1.1870 37 1 3.7028 0.3909 -3.4697 38 1 2.7338 1.5277 -4.4376 39 1 4.3220 0.9835 -5.0294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:15 Heat of formation + Delta-G solvation = -39.229921 kcal Electronic energy + Delta-G solvation = -22077.646432 eV Core-core repulsion = 18828.389793 eV Total energy + Delta-G solvation = -3249.256639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96306 -38.78634 -38.57642 -36.19785 -35.10012 -33.62036 -32.33409 -30.34809 -29.00258 -27.23724 -26.88071 -25.36658 -24.15938 -23.22257 -21.28642 -20.63206 -18.84690 -18.44146 -17.64356 -17.39570 -16.62280 -16.33017 -15.99330 -15.88107 -15.36296 -15.18214 -14.61342 -14.35758 -14.09087 -13.88499 -13.36280 -13.21522 -13.18661 -12.96865 -12.83298 -12.75695 -12.56055 -12.34903 -12.33485 -12.08540 -11.79976 -11.64840 -11.53873 -11.14502 -10.96901 -10.81066 -10.45334 -10.21124 -9.30410 -8.26038 -6.09061 1.01322 1.43236 1.44418 1.58577 1.92714 2.36151 2.38885 3.00579 3.11971 3.60213 3.71074 3.81672 3.99175 4.02966 4.15554 4.26395 4.36518 4.40889 4.44873 4.52799 4.65454 4.66697 4.78591 4.85523 4.88649 4.97354 5.05335 5.07927 5.14422 5.31606 5.34186 5.43293 5.53697 5.63095 6.39030 6.51546 6.60032 6.82750 6.96779 7.18647 8.34433 8.74004 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020098 B = 0.006982 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.871732 B = 4009.495526 C = 4451.652292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.148 3.852 4 H 0.109 0.891 5 C 0.073 3.927 6 O -0.588 6.588 7 N -0.342 5.342 8 N -0.160 5.160 9 N -0.290 5.290 10 C 0.127 3.873 11 C -0.461 4.461 12 H 0.092 0.908 13 C 0.018 3.982 14 N -0.830 5.830 15 Si 0.980 3.020 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.255 1.255 19 C -0.114 4.114 20 C 0.193 3.807 21 H 0.073 0.927 22 C -0.131 4.131 23 O -0.385 6.385 24 C 0.032 3.968 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.396 0.604 33 H 0.270 0.730 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.015 0.985 38 H 0.065 0.935 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.971 2.793 -3.582 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.046 3.954 4 H 0.127 0.873 5 C -0.005 4.005 6 O -0.396 6.396 7 N -0.138 5.138 8 N -0.136 5.136 9 N -0.159 5.159 10 C -0.005 4.005 11 C -0.498 4.498 12 H 0.110 0.890 13 C -0.195 4.195 14 N -0.459 5.459 15 Si 0.802 3.198 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.178 1.178 19 C -0.249 4.249 20 C 0.133 3.867 21 H 0.091 0.909 22 C -0.189 4.189 23 O -0.303 6.303 24 C -0.064 4.064 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.056 0.944 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.034 0.966 38 H 0.084 0.916 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.306 1.772 -2.741 16.629 hybrid contribution 0.585 0.402 -0.133 0.722 sum -15.720 2.174 -2.874 16.128 Atomic orbital electron populations 1.21801 0.90997 1.03620 1.03484 1.21752 0.98927 0.92887 1.02543 1.21708 0.74816 0.98597 1.00303 0.87281 1.22581 1.00414 0.82019 0.95510 1.86493 1.86125 1.21671 1.45294 1.49848 1.07023 1.38965 1.17948 1.81243 0.93559 1.22233 1.16542 1.75045 1.11161 1.16952 1.12771 1.19431 0.92404 0.96911 0.91782 1.18960 0.88928 1.36445 1.05448 0.89028 1.26755 1.03035 0.94108 0.95601 1.70200 1.22995 1.31608 1.21078 0.85230 0.76824 0.78270 0.79503 1.19387 1.20200 1.17808 1.22578 0.92208 1.11701 0.98366 1.19987 0.93562 0.93178 0.79972 0.90907 1.21713 1.02515 0.92420 1.02279 1.87993 1.53642 1.50358 1.38267 1.22832 0.98561 0.88447 0.96574 0.90824 0.90647 0.91032 0.92588 0.92007 0.87660 0.94362 0.75386 0.92062 0.93495 0.89571 0.91364 0.96597 0.91615 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.67 71.98 0.70 -1.52 16 2 C -0.12 -3.20 5.67 30.60 0.17 -3.03 16 3 C 0.15 4.60 2.82 44.99 0.13 4.72 16 4 H 0.11 3.00 6.52 -2.39 -0.02 2.98 16 5 C 0.07 1.92 6.48 71.98 0.47 2.39 16 6 O -0.59 -16.87 13.60 -148.98 -2.03 -18.90 16 7 N -0.34 -15.32 3.23 -311.28 -1.01 -16.33 16 8 N -0.16 -8.77 13.62 37.02 0.50 -8.27 16 9 N -0.29 -18.18 10.58 -52.51 -0.56 -18.73 16 10 C 0.13 7.51 6.69 39.67 0.27 7.78 16 11 C -0.46 -27.24 8.76 23.44 0.21 -27.03 16 12 H 0.09 5.20 6.61 -2.91 -0.02 5.18 16 13 C 0.02 1.03 5.49 85.18 0.47 1.49 16 14 N -0.83 -51.22 11.95 21.80 0.26 -50.96 16 15 Si 0.98 43.75 29.56 68.60 2.03 45.78 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 19 C -0.11 -5.50 6.04 42.25 0.26 -5.25 16 20 C 0.19 7.45 2.89 29.84 0.09 7.54 16 21 H 0.07 2.32 6.30 -2.38 -0.02 2.30 16 22 C -0.13 -4.68 9.54 71.98 0.69 -3.99 16 23 O -0.39 -15.37 8.69 -148.98 -1.30 -16.67 16 24 C 0.03 1.00 10.81 113.37 1.23 2.23 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 0.94 6.46 -2.38 -0.02 0.92 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 1.75 6.34 -2.39 -0.02 1.74 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.40 7.34 9.12 -74.05 -0.68 6.67 16 33 H 0.27 15.36 8.30 -92.71 -0.77 14.59 16 34 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 39 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -81.72 326.47 2.95 -78.77 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.38 Total: 19.96 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.66 Total: -14.66 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -0.80 Total: -94.28 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -3.32 Total: -35.56 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -81.72 2.95 -78.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.541 kcal (2) G-P(sol) polarization free energy of solvation -81.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds