Wall clock time and date at job start Mon Mar 30 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 H 1.08994 * 109.47032 * 304.88760 * 3 2 1 5 5 C 1.53000 * 109.47247 * 184.88505 * 3 2 1 6 6 O 1.42910 * 109.46835 * 65.15324 * 5 3 2 7 7 N 1.46503 * 109.46554 * 64.89163 * 3 2 1 8 8 N 1.40118 * 126.49882 * 60.15243 * 7 3 2 9 9 N 1.28666 * 108.93801 * 180.25779 * 8 7 3 10 10 C 1.34837 * 109.63540 * 359.75997 * 9 8 7 11 11 C 1.41488 * 126.02441 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00540 * 174.65567 * 11 10 9 13 13 C 1.39742 * 119.99936 * 354.65664 * 11 10 9 14 14 N 1.30988 * 119.99495 * 5.23672 * 13 11 10 15 15 Si 1.86795 * 120.00276 * 185.23629 * 13 11 10 16 16 H 1.48499 * 109.47231 * 94.99555 * 15 13 11 17 17 H 1.48496 * 109.47499 * 214.99719 * 15 13 11 18 18 H 1.48501 * 109.47337 * 334.99904 * 15 13 11 19 19 C 1.35016 * 126.48875 * 239.99503 * 7 3 2 20 20 C 1.50707 * 126.77419 * 0.02562 * 19 7 3 21 21 H 1.09005 * 109.46757 * 14.70932 * 20 19 7 22 22 C 1.52990 * 109.47268 * 254.71082 * 20 19 7 23 23 O 1.42896 * 109.46982 * 134.70508 * 20 19 7 24 24 C 1.42896 * 114.00349 * 269.99826 * 23 20 19 25 25 H 1.09002 * 109.47172 * 174.91321 * 1 2 3 26 26 H 1.09002 * 109.46836 * 294.91706 * 1 2 3 27 27 H 1.09001 * 109.46936 * 54.91869 * 1 2 3 28 28 H 1.09012 * 109.46904 * 240.00537 * 2 1 3 29 29 H 1.08998 * 109.47566 * 120.00555 * 2 1 3 30 30 H 1.08989 * 109.47455 * 185.15404 * 5 3 2 31 31 H 1.09000 * 109.47519 * 305.15850 * 5 3 2 32 32 H 0.96698 * 113.99779 * 179.97438 * 6 5 3 33 33 H 0.97003 * 119.99521 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.47109 * 299.99635 * 22 20 19 35 35 H 1.09000 * 109.47480 * 59.99439 * 22 20 19 36 36 H 1.09003 * 109.47554 * 180.02562 * 22 20 19 37 37 H 1.09006 * 109.47137 * 180.02562 * 24 23 20 38 38 H 1.09008 * 109.46795 * 60.00698 * 24 23 20 39 39 H 1.09000 * 109.47582 * 300.00760 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9810 -0.8429 5 6 3.5651 1.4443 -0.1228 6 8 3.9410 0.9136 -1.3954 7 7 1.6502 2.0982 1.2508 8 7 2.0115 1.7044 2.5460 9 7 1.4796 2.5145 3.3924 10 6 0.7703 3.4545 2.7357 11 6 0.0455 4.5153 3.3285 12 1 -0.4192 5.2658 2.7063 13 6 -0.0691 4.5919 4.7191 14 7 0.5784 3.7423 5.4773 15 14 -1.1455 5.9056 5.4967 16 1 -2.4922 5.3433 5.7715 17 1 -0.5301 6.3607 6.7692 18 1 -1.2703 7.0572 4.5675 19 6 0.8770 3.1982 1.3736 20 6 0.2481 3.9884 0.2549 21 1 0.2846 3.4065 -0.6661 22 6 1.0152 5.2979 0.0616 23 8 -1.1126 4.2772 0.5822 24 6 -2.0401 3.2838 0.1408 25 1 -0.3633 -1.0236 -0.0911 26 1 -0.3633 0.4330 0.9320 27 1 -0.3633 0.5906 -0.8410 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9358 2.4651 -0.0310 31 1 3.9941 0.8293 0.6683 32 1 4.8963 0.8850 -1.5429 33 1 0.4992 3.7957 6.4426 34 1 0.9787 5.8798 0.9826 35 1 2.0531 5.0776 -0.1880 36 1 0.5601 5.8697 -0.7471 37 1 -3.0502 3.5770 0.4272 38 1 -1.7945 2.3271 0.6019 39 1 -1.9831 3.1897 -0.9436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:18 Heat of formation + Delta-G solvation = -12.448544 kcal Electronic energy + Delta-G solvation = -22141.227364 eV Core-core repulsion = 18893.132053 eV Total energy + Delta-G solvation = -3248.095311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20656 -37.37766 -37.23089 -34.86592 -33.16338 -31.95643 -30.60188 -28.56682 -28.22523 -25.88651 -25.00767 -23.45338 -22.54591 -22.02598 -19.63878 -18.98523 -17.61750 -16.65702 -15.96525 -15.66587 -15.09699 -14.81690 -14.60427 -14.37708 -14.25795 -13.67600 -13.08957 -12.90248 -12.67463 -12.58575 -12.11755 -11.96029 -11.65091 -11.35538 -11.19438 -11.10633 -10.93956 -10.87639 -10.77722 -10.70319 -10.34623 -10.11816 -9.93391 -9.71103 -9.22391 -9.12970 -8.73841 -8.46783 -7.38857 -6.32682 -4.08004 2.76099 3.20225 3.25707 3.29636 3.37694 4.19990 4.33251 4.41002 4.47434 4.84672 5.15431 5.18280 5.47687 5.48320 5.55860 5.59959 5.63417 5.74582 5.75141 5.85381 5.88726 6.00886 6.06003 6.10307 6.15664 6.28021 6.34748 6.40915 6.51653 6.80072 6.97185 7.18363 7.29957 7.54499 7.57021 7.92177 8.16042 8.62707 8.88698 9.17326 10.21948 10.64093 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.006995 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.060693 B = 4001.625274 C = 4450.200922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.171 3.829 4 H 0.091 0.909 5 C 0.071 3.929 6 O -0.573 6.573 7 N -0.368 5.368 8 N -0.122 5.122 9 N -0.230 5.230 10 C 0.174 3.826 11 C -0.431 4.431 12 H 0.090 0.910 13 C 0.070 3.930 14 N -0.778 5.778 15 Si 0.906 3.094 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.263 1.263 19 C -0.153 4.153 20 C 0.194 3.806 21 H 0.042 0.958 22 C -0.139 4.139 23 O -0.361 6.361 24 C 0.037 3.963 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.381 0.619 33 H 0.270 0.730 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -2.305 -12.102 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.066 3.934 4 H 0.109 0.891 5 C -0.008 4.008 6 O -0.377 6.377 7 N -0.167 5.167 8 N -0.099 5.099 9 N -0.104 5.104 10 C 0.046 3.954 11 C -0.467 4.467 12 H 0.108 0.892 13 C -0.148 4.148 14 N -0.404 5.404 15 Si 0.731 3.269 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.283 4.283 20 C 0.133 3.867 21 H 0.060 0.940 22 C -0.197 4.197 23 O -0.278 6.278 24 C -0.060 4.060 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.228 0.772 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.239 -3.275 -10.989 11.534 hybrid contribution -0.357 0.965 -0.278 1.066 sum 0.883 -2.310 -11.267 11.535 Atomic orbital electron populations 1.21742 0.95562 1.01147 1.02137 1.21804 0.96426 0.95023 1.03032 1.20745 0.93474 0.94602 0.84617 0.89074 1.22429 0.95140 0.98127 0.85097 1.86370 1.28510 1.86797 1.36067 1.49314 1.39474 1.21760 1.06180 1.81431 1.23096 1.22372 0.83010 1.75135 1.09717 1.03559 1.21940 1.18911 0.95834 0.94714 0.85986 1.18717 1.29210 1.07890 0.90893 0.89157 1.25847 0.95153 0.96149 0.97701 1.70041 1.33263 1.31843 1.05277 0.86348 0.80326 0.81503 0.78705 1.19999 1.20745 1.18740 1.21768 1.11789 0.97008 0.97716 1.19739 0.81731 0.94027 0.91158 0.94038 1.21785 0.98458 0.96726 1.02743 1.88014 1.15165 1.44333 1.80301 1.22648 0.93626 0.92997 0.96762 0.92836 0.92180 0.93252 0.90380 0.90791 0.93206 0.92193 0.77239 0.91926 0.90400 0.92314 0.92888 0.90325 0.94281 0.95399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.74 37.16 0.36 -1.89 16 2 C -0.12 -1.91 5.51 -26.73 -0.15 -2.06 16 3 C 0.17 2.86 2.78 -67.93 -0.19 2.67 16 4 H 0.09 1.45 6.51 -51.93 -0.34 1.12 16 5 C 0.07 1.05 6.69 37.16 0.25 1.30 16 6 O -0.57 -6.97 13.12 -35.23 -0.46 -7.43 16 7 N -0.37 -7.87 2.83 -49.74 -0.14 -8.01 16 8 N -0.12 -3.10 13.62 60.35 0.82 -2.28 16 9 N -0.23 -6.60 10.57 32.05 0.34 -6.27 16 10 C 0.17 4.75 6.69 -85.02 -0.57 4.18 16 11 C -0.43 -11.83 8.63 -37.78 -0.33 -12.15 16 12 H 0.09 2.40 6.54 -52.49 -0.34 2.05 16 13 C 0.07 1.89 5.49 -17.35 -0.10 1.79 16 14 N -0.78 -22.13 11.94 55.54 0.66 -21.47 16 15 Si 0.91 20.11 29.56 -169.99 -5.03 15.09 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 19 C -0.15 -3.50 6.04 -80.90 -0.49 -3.99 16 20 C 0.19 3.71 2.87 -27.88 -0.08 3.63 16 21 H 0.04 0.71 6.30 -51.93 -0.33 0.38 16 22 C -0.14 -2.42 9.54 37.15 0.35 -2.06 16 23 O -0.36 -7.22 8.88 -35.23 -0.31 -7.53 16 24 C 0.04 0.60 10.81 101.05 1.09 1.69 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.11 7.88 -51.93 -0.41 0.71 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.06 7.70 -51.92 -0.40 0.66 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.75 8.14 -51.94 -0.42 0.33 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.38 2.81 9.12 45.56 0.42 3.23 16 33 H 0.27 7.09 8.30 -40.82 -0.34 6.75 16 34 H 0.08 1.52 7.67 -51.93 -0.40 1.12 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.69 8.13 -51.92 -0.42 0.26 16 39 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -32.34 327.99 -4.17 -36.51 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.16 Total: 3.32 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 0.16 Total: -6.88 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 1.68 Total: -38.02 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.78 Total: -14.96 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.34 -4.17 -36.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.059 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds