Wall clock time and date at job start Mon Mar 30 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 H 1.08994 * 109.47032 * 304.88760 * 3 2 1 5 5 C 1.53000 * 109.47247 * 184.88505 * 3 2 1 6 6 O 1.42910 * 109.46835 * 65.15324 * 5 3 2 7 7 N 1.46503 * 109.46554 * 64.89163 * 3 2 1 8 8 N 1.40118 * 126.49882 * 60.15243 * 7 3 2 9 9 N 1.28666 * 108.93801 * 180.25779 * 8 7 3 10 10 C 1.34837 * 109.63540 * 359.75997 * 9 8 7 11 11 C 1.41488 * 126.02441 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00540 * 174.65567 * 11 10 9 13 13 C 1.39742 * 119.99936 * 354.65664 * 11 10 9 14 14 N 1.30988 * 119.99495 * 5.23672 * 13 11 10 15 15 Si 1.86795 * 120.00276 * 185.23629 * 13 11 10 16 16 H 1.48499 * 109.47231 * 94.99555 * 15 13 11 17 17 H 1.48496 * 109.47499 * 214.99719 * 15 13 11 18 18 H 1.48501 * 109.47337 * 334.99904 * 15 13 11 19 19 C 1.35016 * 126.48875 * 239.99503 * 7 3 2 20 20 C 1.50707 * 126.77419 * 0.02562 * 19 7 3 21 21 H 1.09005 * 109.46757 * 14.70932 * 20 19 7 22 22 C 1.52990 * 109.47268 * 254.71082 * 20 19 7 23 23 O 1.42896 * 109.46982 * 134.70508 * 20 19 7 24 24 C 1.42896 * 114.00349 * 269.99826 * 23 20 19 25 25 H 1.09002 * 109.47172 * 174.91321 * 1 2 3 26 26 H 1.09002 * 109.46836 * 294.91706 * 1 2 3 27 27 H 1.09001 * 109.46936 * 54.91869 * 1 2 3 28 28 H 1.09012 * 109.46904 * 240.00537 * 2 1 3 29 29 H 1.08998 * 109.47566 * 120.00555 * 2 1 3 30 30 H 1.08989 * 109.47455 * 185.15404 * 5 3 2 31 31 H 1.09000 * 109.47519 * 305.15850 * 5 3 2 32 32 H 0.96698 * 113.99779 * 179.97438 * 6 5 3 33 33 H 0.97003 * 119.99521 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.47109 * 299.99635 * 22 20 19 35 35 H 1.09000 * 109.47480 * 59.99439 * 22 20 19 36 36 H 1.09003 * 109.47554 * 180.02562 * 22 20 19 37 37 H 1.09006 * 109.47137 * 180.02562 * 24 23 20 38 38 H 1.09008 * 109.46795 * 60.00698 * 24 23 20 39 39 H 1.09000 * 109.47582 * 300.00760 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9810 -0.8429 5 6 3.5651 1.4443 -0.1228 6 8 3.9410 0.9136 -1.3954 7 7 1.6502 2.0982 1.2508 8 7 2.0115 1.7044 2.5460 9 7 1.4796 2.5145 3.3924 10 6 0.7703 3.4545 2.7357 11 6 0.0455 4.5153 3.3285 12 1 -0.4192 5.2658 2.7063 13 6 -0.0691 4.5919 4.7191 14 7 0.5784 3.7423 5.4773 15 14 -1.1455 5.9056 5.4967 16 1 -2.4922 5.3433 5.7715 17 1 -0.5301 6.3607 6.7692 18 1 -1.2703 7.0572 4.5675 19 6 0.8770 3.1982 1.3736 20 6 0.2481 3.9884 0.2549 21 1 0.2846 3.4065 -0.6661 22 6 1.0152 5.2979 0.0616 23 8 -1.1126 4.2772 0.5822 24 6 -2.0401 3.2838 0.1408 25 1 -0.3633 -1.0236 -0.0911 26 1 -0.3633 0.4330 0.9320 27 1 -0.3633 0.5906 -0.8410 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9358 2.4651 -0.0310 31 1 3.9941 0.8293 0.6683 32 1 4.8963 0.8850 -1.5429 33 1 0.4992 3.7957 6.4426 34 1 0.9787 5.8798 0.9826 35 1 2.0531 5.0776 -0.1880 36 1 0.5601 5.8697 -0.7471 37 1 -3.0502 3.5770 0.4272 38 1 -1.7945 2.3271 0.6019 39 1 -1.9831 3.1897 -0.9436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:18 Heat of formation + Delta-G solvation = -37.524524 kcal Electronic energy + Delta-G solvation = -22142.314740 eV Core-core repulsion = 18893.132053 eV Total energy + Delta-G solvation = -3249.182687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03905 -38.77151 -38.58853 -36.21417 -35.05254 -33.53860 -32.18667 -30.36400 -29.64768 -27.22694 -26.89464 -24.77662 -24.15540 -23.60841 -21.44526 -20.60286 -18.99365 -18.28740 -17.45802 -17.19035 -16.58921 -16.55434 -15.93626 -15.80127 -15.73282 -15.16866 -14.72564 -14.46863 -14.16184 -13.87782 -13.46111 -13.29178 -13.16007 -12.95093 -12.91907 -12.75922 -12.42110 -12.33586 -12.19966 -12.08796 -11.94734 -11.66306 -11.54797 -11.15685 -11.03210 -10.83116 -10.45493 -10.29069 -9.33956 -8.27642 -6.10939 0.95203 1.43752 1.44233 1.58356 1.78435 2.35378 2.36927 3.04165 3.21713 3.56303 3.60031 3.82565 3.89770 4.04386 4.10165 4.29259 4.33472 4.41797 4.47771 4.53926 4.61286 4.66430 4.78023 4.84482 4.86147 4.93107 4.97194 5.09018 5.13072 5.20663 5.30108 5.39976 5.51272 5.61195 6.36397 6.49761 6.57351 6.76549 6.94111 7.16881 8.30713 8.71831 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.006995 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.060693 B = 4001.625274 C = 4450.200922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.154 3.846 4 H 0.112 0.888 5 C 0.085 3.915 6 O -0.569 6.569 7 N -0.345 5.345 8 N -0.154 5.154 9 N -0.285 5.285 10 C 0.132 3.868 11 C -0.456 4.456 12 H 0.091 0.909 13 C 0.020 3.980 14 N -0.827 5.827 15 Si 0.978 3.022 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.253 1.253 19 C -0.116 4.116 20 C 0.189 3.811 21 H 0.075 0.925 22 C -0.135 4.135 23 O -0.382 6.382 24 C 0.031 3.969 25 H 0.074 0.926 26 H 0.017 0.983 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.404 0.596 33 H 0.270 0.730 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.018 0.982 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -1.955 -15.486 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.051 3.949 4 H 0.130 0.870 5 C 0.005 3.995 6 O -0.377 6.377 7 N -0.143 5.143 8 N -0.129 5.129 9 N -0.155 5.155 10 C 0.000 4.000 11 C -0.493 4.493 12 H 0.109 0.891 13 C -0.194 4.194 14 N -0.456 5.456 15 Si 0.800 3.200 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.177 1.177 19 C -0.251 4.251 20 C 0.129 3.871 21 H 0.092 0.908 22 C -0.193 4.193 23 O -0.300 6.300 24 C -0.065 4.065 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.037 0.963 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.792 -2.983 -14.408 14.735 hybrid contribution -0.159 0.729 0.438 0.865 sum 0.633 -2.253 -13.971 14.166 Atomic orbital electron populations 1.21713 0.95325 1.02551 1.00562 1.21780 0.96523 0.93839 1.03469 1.21285 0.95476 0.95450 0.82665 0.87027 1.22050 0.93312 0.97916 0.86172 1.86309 1.31005 1.86366 1.34055 1.49696 1.37116 1.20529 1.06965 1.81318 1.24603 1.22848 0.84170 1.75083 1.11638 1.05018 1.23780 1.19395 0.97155 0.95531 0.87926 1.18914 1.30271 1.08525 0.91592 0.89099 1.26720 0.96297 0.98297 0.98053 1.70189 1.35703 1.34352 1.05367 0.85248 0.78178 0.78740 0.77787 1.19671 1.20265 1.17695 1.22556 1.08846 0.95906 0.97747 1.20054 0.81680 0.94851 0.90514 0.90750 1.21769 0.99247 0.95664 1.02628 1.88000 1.15559 1.45399 1.81020 1.22854 0.93592 0.91273 0.98811 0.90744 0.96415 0.91330 0.87347 0.92791 0.93607 0.93228 0.74456 0.91996 0.93216 0.91172 0.89454 0.88866 0.96301 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.74 71.98 0.70 -3.37 16 2 C -0.12 -3.35 5.51 30.60 0.17 -3.18 16 3 C 0.15 4.80 2.78 44.99 0.13 4.93 16 4 H 0.11 3.07 6.51 -2.39 -0.02 3.06 16 5 C 0.08 2.31 6.69 71.98 0.48 2.79 16 6 O -0.57 -11.63 13.12 -148.98 -1.95 -13.58 16 7 N -0.35 -14.67 2.83 -311.26 -0.88 -15.55 16 8 N -0.15 -8.06 13.62 37.02 0.50 -7.55 16 9 N -0.28 -17.16 10.57 -52.52 -0.56 -17.71 16 10 C 0.13 7.42 6.69 39.67 0.27 7.68 16 11 C -0.46 -25.89 8.63 23.43 0.20 -25.69 16 12 H 0.09 4.94 6.54 -2.91 -0.02 4.92 16 13 C 0.02 1.09 5.49 85.18 0.47 1.56 16 14 N -0.83 -49.61 11.94 21.80 0.26 -49.35 16 15 Si 0.98 42.58 29.56 68.60 2.03 44.60 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 19 C -0.12 -5.30 6.04 42.26 0.26 -5.05 16 20 C 0.19 6.81 2.87 29.85 0.09 6.90 16 21 H 0.07 2.20 6.30 -2.38 -0.02 2.19 16 22 C -0.14 -4.35 9.54 71.98 0.69 -3.67 16 23 O -0.38 -14.56 8.88 -148.98 -1.32 -15.88 16 24 C 0.03 0.94 10.81 113.37 1.23 2.16 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.02 0.63 7.88 -2.39 -0.02 0.61 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.11 2.49 7.70 -2.38 -0.02 2.47 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.40 4.39 9.12 -74.06 -0.68 3.72 16 33 H 0.27 15.00 8.30 -92.71 -0.77 14.23 16 34 H 0.05 1.89 7.67 -2.38 -0.02 1.87 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.02 0.63 8.13 -2.38 -0.02 0.61 16 39 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 Total: -1.00 -74.90 327.99 3.12 -71.78 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.38 Total: 18.16 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 4.66 Total: -14.92 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -0.67 Total: -90.16 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -3.28 Total: -29.47 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -74.90 3.12 -71.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.258 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds