Wall clock time and date at job start Mon Mar 30 2020 05:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 H 1.09002 * 109.47519 * 304.96753 * 3 2 1 5 5 C 1.53006 * 109.47198 * 184.96927 * 3 2 1 6 6 O 1.42894 * 109.47069 * 65.37574 * 5 3 2 7 7 N 1.46504 * 109.47281 * 64.96902 * 3 2 1 8 8 N 1.40119 * 126.49313 * 59.97610 * 7 3 2 9 9 N 1.28667 * 108.93448 * 180.02562 * 8 7 3 10 10 C 1.34843 * 109.63748 * 359.72156 * 9 8 7 11 11 C 1.41491 * 126.02427 * 180.27519 * 10 9 8 12 12 H 1.08000 * 119.99928 * 180.19649 * 11 10 9 13 13 C 1.39735 * 120.00014 * 0.19432 * 11 10 9 14 14 N 1.30984 * 119.99952 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00031 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47116 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47095 * 120.00453 * 15 13 11 18 18 H 1.48508 * 109.47100 * 240.00105 * 15 13 11 19 19 C 1.35020 * 126.48955 * 239.99770 * 7 3 2 20 20 C 1.50701 * 126.77504 * 359.97438 * 19 7 3 21 21 H 1.08997 * 109.46979 * 345.00062 * 20 19 7 22 22 C 1.52999 * 109.47272 * 104.99738 * 20 19 7 23 23 O 1.42898 * 109.46994 * 224.99775 * 20 19 7 24 24 C 1.42902 * 114.00018 * 89.99976 * 23 20 19 25 25 H 1.08997 * 109.47076 * 54.75034 * 1 2 3 26 26 H 1.09003 * 109.46759 * 174.74837 * 1 2 3 27 27 H 1.08995 * 109.46837 * 294.74616 * 1 2 3 28 28 H 1.08997 * 109.47076 * 240.00283 * 2 1 3 29 29 H 1.08998 * 109.46876 * 119.99497 * 2 1 3 30 30 H 1.08994 * 109.47384 * 185.38057 * 5 3 2 31 31 H 1.09003 * 109.46783 * 305.38280 * 5 3 2 32 32 H 0.96694 * 114.00343 * 179.97438 * 6 5 3 33 33 H 0.96998 * 120.00309 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47395 * 180.02562 * 22 20 19 35 35 H 1.08999 * 109.47178 * 300.00258 * 22 20 19 36 36 H 1.09004 * 109.46924 * 59.99555 * 22 20 19 37 37 H 1.08997 * 109.47200 * 60.00020 * 24 23 20 38 38 H 1.09001 * 109.47151 * 179.97438 * 24 23 20 39 39 H 1.09003 * 109.47035 * 299.99857 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9815 -0.8421 5 6 3.5649 1.4444 -0.1250 6 8 3.9390 0.9193 -1.4002 7 7 1.6517 2.0978 1.2515 8 7 2.0120 1.7014 2.5463 9 7 1.4863 2.5148 3.3934 10 6 0.7828 3.4600 2.7376 11 6 0.0697 4.5282 3.3311 12 1 -0.4655 5.2312 2.7100 13 6 0.0580 4.6737 4.7208 14 7 0.7076 3.8214 5.4740 15 14 -0.8828 6.0845 5.5044 16 1 -1.5262 6.9001 4.4433 17 1 -1.9258 5.5408 6.4110 18 1 0.0552 6.9336 6.2819 19 6 0.8786 3.1977 1.3757 20 6 0.2491 3.9889 0.2582 21 1 0.7136 3.7133 -0.6885 22 6 -1.2491 3.6844 0.1988 23 8 0.4424 5.3848 0.4952 24 6 1.6446 5.9095 -0.0717 25 1 -0.3633 0.5931 -0.8392 26 1 -0.3633 -1.0234 -0.0941 27 1 -0.3633 0.4302 0.9333 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9361 2.4648 -0.0291 31 1 3.9947 0.8259 0.6629 32 1 4.8940 0.8910 -1.5492 33 1 0.6998 3.9225 6.4387 34 1 -1.7044 4.2563 -0.6097 35 1 -1.3966 2.6197 0.0181 36 1 -1.7137 3.9599 1.1457 37 1 1.6298 5.7658 -1.1521 38 1 1.7174 6.9739 0.1519 39 1 2.5036 5.3893 0.3523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545327.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:23 Heat of formation + Delta-G solvation = -12.499512 kcal Electronic energy + Delta-G solvation = -22108.552591 eV Core-core repulsion = 18860.455070 eV Total energy + Delta-G solvation = -3248.097521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20392 -37.39047 -37.23826 -34.87141 -33.17176 -31.86117 -30.70757 -28.55321 -28.17562 -25.90089 -25.01263 -23.44141 -22.59147 -21.98951 -19.61113 -19.01974 -17.61075 -16.65768 -15.93661 -15.73150 -15.04341 -14.81365 -14.61427 -14.41764 -14.27662 -13.65484 -13.09929 -12.87186 -12.67951 -12.59501 -12.10218 -11.95726 -11.66640 -11.26246 -11.18575 -11.13046 -10.93196 -10.86058 -10.77753 -10.69931 -10.35627 -10.11703 -9.95111 -9.68507 -9.24682 -9.14143 -8.73945 -8.46621 -7.39129 -6.32390 -4.08218 2.75547 3.18837 3.25642 3.31066 3.38599 4.19995 4.31111 4.38846 4.49009 4.85589 5.15340 5.18483 5.47717 5.49541 5.56525 5.60275 5.63217 5.73623 5.76956 5.84107 5.88678 6.02687 6.06132 6.11143 6.15860 6.29444 6.35605 6.42783 6.54194 6.82837 6.97215 7.18482 7.29723 7.53249 7.57090 7.91340 8.16086 8.64026 8.88637 9.17507 10.22160 10.64231 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.006957 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.376391 B = 4024.043294 C = 4450.009806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.171 3.829 4 H 0.091 0.909 5 C 0.071 3.929 6 O -0.572 6.572 7 N -0.368 5.368 8 N -0.122 5.122 9 N -0.230 5.230 10 C 0.174 3.826 11 C -0.432 4.432 12 H 0.092 0.908 13 C 0.070 3.930 14 N -0.778 5.778 15 Si 0.904 3.096 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.153 4.153 20 C 0.194 3.806 21 H 0.041 0.959 22 C -0.140 4.140 23 O -0.362 6.362 24 C 0.038 3.962 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.381 0.619 33 H 0.270 0.730 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -1.686 -12.167 12.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.066 3.934 4 H 0.109 0.891 5 C -0.008 4.008 6 O -0.377 6.377 7 N -0.167 5.167 8 N -0.099 5.099 9 N -0.103 5.103 10 C 0.045 3.955 11 C -0.467 4.467 12 H 0.110 0.890 13 C -0.149 4.149 14 N -0.404 5.404 15 Si 0.730 3.270 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.283 4.283 20 C 0.134 3.866 21 H 0.059 0.941 22 C -0.198 4.198 23 O -0.279 6.279 24 C -0.059 4.059 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.228 0.772 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.956 -2.702 -11.053 11.545 hybrid contribution 0.078 1.255 -0.279 1.288 sum 2.034 -1.447 -11.332 11.604 Atomic orbital electron populations 1.21742 0.95410 1.01142 1.02337 1.21797 0.96567 0.94888 1.02983 1.20750 0.93366 0.94728 0.84599 0.89073 1.22433 0.95270 0.98065 0.85055 1.86368 1.28534 1.87009 1.35785 1.49315 1.39041 1.22188 1.06195 1.81434 1.22918 1.22508 0.83050 1.75138 1.10122 1.03164 1.21895 1.18925 0.96107 0.94465 0.85972 1.18789 1.28072 1.08916 0.90972 0.88978 1.25855 0.94835 0.96454 0.97741 1.70039 1.32874 1.32098 1.05423 0.86324 0.79692 0.81588 0.79432 1.18533 1.20397 1.20402 1.21762 1.11519 0.97386 0.97636 1.19741 0.94906 0.80372 0.91602 0.94100 1.21803 0.94290 1.00598 1.03089 1.88017 1.39947 1.22519 1.77406 1.22613 0.88420 0.99240 0.95630 0.93058 0.92898 0.92057 0.90436 0.90816 0.93411 0.92172 0.77249 0.91966 0.92957 0.92068 0.90392 0.95351 0.90257 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.74 37.16 0.36 -1.88 16 2 C -0.12 -1.89 5.51 -26.73 -0.15 -2.04 16 3 C 0.17 2.86 2.78 -67.93 -0.19 2.68 16 4 H 0.09 1.46 6.52 -51.93 -0.34 1.12 16 5 C 0.07 1.05 6.69 37.16 0.25 1.30 16 6 O -0.57 -6.99 13.13 -35.23 -0.46 -7.46 16 7 N -0.37 -7.87 2.83 -49.73 -0.14 -8.01 16 8 N -0.12 -3.10 13.62 60.35 0.82 -2.28 16 9 N -0.23 -6.60 10.55 32.05 0.34 -6.26 16 10 C 0.17 4.75 6.69 -85.02 -0.57 4.18 16 11 C -0.43 -11.84 8.71 -37.78 -0.33 -12.17 16 12 H 0.09 2.45 6.61 -52.49 -0.35 2.11 16 13 C 0.07 1.87 5.49 -17.35 -0.10 1.78 16 14 N -0.78 -22.13 11.92 55.54 0.66 -21.47 16 15 Si 0.90 20.05 29.56 -169.99 -5.02 15.03 16 16 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.15 -3.50 6.04 -80.90 -0.49 -3.99 16 20 C 0.19 3.72 2.88 -27.88 -0.08 3.64 16 21 H 0.04 0.70 6.31 -51.93 -0.33 0.37 16 22 C -0.14 -2.43 9.54 37.16 0.35 -2.08 16 23 O -0.36 -7.24 8.76 -35.23 -0.31 -7.55 16 24 C 0.04 0.62 10.81 101.05 1.09 1.71 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.12 7.90 -51.93 -0.41 0.71 16 28 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.38 2.84 9.12 45.56 0.42 3.25 16 33 H 0.27 7.07 8.30 -40.82 -0.34 6.73 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 37 H 0.03 0.38 8.08 -51.93 -0.42 -0.03 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -32.39 328.34 -4.19 -36.58 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.18 Total: 3.35 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.16 Total: -6.87 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 1.68 Total: -38.02 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.77 Total: -15.01 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.39 -4.19 -36.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545327.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.076 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds