Wall clock time and date at job start Mon Mar 30 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 H 1.09002 * 109.47519 * 304.96753 * 3 2 1 5 5 C 1.53006 * 109.47198 * 184.96927 * 3 2 1 6 6 O 1.42894 * 109.47069 * 65.37574 * 5 3 2 7 7 N 1.46504 * 109.47281 * 64.96902 * 3 2 1 8 8 N 1.40119 * 126.49313 * 59.97610 * 7 3 2 9 9 N 1.28667 * 108.93448 * 180.02562 * 8 7 3 10 10 C 1.34843 * 109.63748 * 359.72156 * 9 8 7 11 11 C 1.41491 * 126.02427 * 180.27519 * 10 9 8 12 12 H 1.08000 * 119.99928 * 180.19649 * 11 10 9 13 13 C 1.39735 * 120.00014 * 0.19432 * 11 10 9 14 14 N 1.30984 * 119.99952 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00031 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47116 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47095 * 120.00453 * 15 13 11 18 18 H 1.48508 * 109.47100 * 240.00105 * 15 13 11 19 19 C 1.35020 * 126.48955 * 239.99770 * 7 3 2 20 20 C 1.50701 * 126.77504 * 359.97438 * 19 7 3 21 21 H 1.08997 * 109.46979 * 345.00062 * 20 19 7 22 22 C 1.52999 * 109.47272 * 104.99738 * 20 19 7 23 23 O 1.42898 * 109.46994 * 224.99775 * 20 19 7 24 24 C 1.42902 * 114.00018 * 89.99976 * 23 20 19 25 25 H 1.08997 * 109.47076 * 54.75034 * 1 2 3 26 26 H 1.09003 * 109.46759 * 174.74837 * 1 2 3 27 27 H 1.08995 * 109.46837 * 294.74616 * 1 2 3 28 28 H 1.08997 * 109.47076 * 240.00283 * 2 1 3 29 29 H 1.08998 * 109.46876 * 119.99497 * 2 1 3 30 30 H 1.08994 * 109.47384 * 185.38057 * 5 3 2 31 31 H 1.09003 * 109.46783 * 305.38280 * 5 3 2 32 32 H 0.96694 * 114.00343 * 179.97438 * 6 5 3 33 33 H 0.96998 * 120.00309 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47395 * 180.02562 * 22 20 19 35 35 H 1.08999 * 109.47178 * 300.00258 * 22 20 19 36 36 H 1.09004 * 109.46924 * 59.99555 * 22 20 19 37 37 H 1.08997 * 109.47200 * 60.00020 * 24 23 20 38 38 H 1.09001 * 109.47151 * 179.97438 * 24 23 20 39 39 H 1.09003 * 109.47035 * 299.99857 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9815 -0.8421 5 6 3.5649 1.4444 -0.1250 6 8 3.9390 0.9193 -1.4002 7 7 1.6517 2.0978 1.2515 8 7 2.0120 1.7014 2.5463 9 7 1.4863 2.5148 3.3934 10 6 0.7828 3.4600 2.7376 11 6 0.0697 4.5282 3.3311 12 1 -0.4655 5.2312 2.7100 13 6 0.0580 4.6737 4.7208 14 7 0.7076 3.8214 5.4740 15 14 -0.8828 6.0845 5.5044 16 1 -1.5262 6.9001 4.4433 17 1 -1.9258 5.5408 6.4110 18 1 0.0552 6.9336 6.2819 19 6 0.8786 3.1977 1.3757 20 6 0.2491 3.9889 0.2582 21 1 0.7136 3.7133 -0.6885 22 6 -1.2491 3.6844 0.1988 23 8 0.4424 5.3848 0.4952 24 6 1.6446 5.9095 -0.0717 25 1 -0.3633 0.5931 -0.8392 26 1 -0.3633 -1.0234 -0.0941 27 1 -0.3633 0.4302 0.9333 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9361 2.4648 -0.0291 31 1 3.9947 0.8259 0.6629 32 1 4.8940 0.8910 -1.5492 33 1 0.6998 3.9225 6.4387 34 1 -1.7044 4.2563 -0.6097 35 1 -1.3966 2.6197 0.0181 36 1 -1.7137 3.9599 1.1457 37 1 1.6298 5.7658 -1.1521 38 1 1.7174 6.9739 0.1519 39 1 2.5036 5.3893 0.3523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545327.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:22 Heat of formation + Delta-G solvation = -37.585015 kcal Electronic energy + Delta-G solvation = -22109.640380 eV Core-core repulsion = 18860.455070 eV Total energy + Delta-G solvation = -3249.185310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03828 -38.78480 -38.60046 -36.22503 -35.06131 -33.44448 -32.27942 -30.37760 -29.57824 -27.24000 -26.90295 -24.75907 -24.20969 -23.57435 -21.41147 -20.63976 -18.98889 -18.29377 -17.43784 -17.24170 -16.63855 -16.45654 -15.96114 -15.80520 -15.77980 -15.17317 -14.67671 -14.46762 -14.17670 -13.87706 -13.42543 -13.33935 -13.14210 -12.91366 -12.89301 -12.76810 -12.41529 -12.30810 -12.18631 -12.07914 -11.92305 -11.69045 -11.52686 -11.16916 -11.06361 -10.83891 -10.46483 -10.28928 -9.34401 -8.27291 -6.11230 0.94777 1.42885 1.44175 1.59911 1.78576 2.35782 2.36432 3.02178 3.20913 3.56965 3.60548 3.83554 3.88811 4.03693 4.09784 4.31697 4.33666 4.42613 4.47670 4.53102 4.62221 4.64816 4.79924 4.84068 4.86128 4.95023 4.99323 5.11845 5.13652 5.23070 5.31764 5.42158 5.51737 5.61279 6.35938 6.49030 6.58453 6.74180 6.93965 7.17023 8.30747 8.72109 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.006957 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.376391 B = 4024.043294 C = 4450.009806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.154 3.846 4 H 0.112 0.888 5 C 0.085 3.915 6 O -0.568 6.568 7 N -0.346 5.346 8 N -0.154 5.154 9 N -0.285 5.285 10 C 0.131 3.869 11 C -0.457 4.457 12 H 0.092 0.908 13 C 0.019 3.981 14 N -0.827 5.827 15 Si 0.978 3.022 16 H -0.253 1.253 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.117 4.117 20 C 0.190 3.810 21 H 0.074 0.926 22 C -0.136 4.136 23 O -0.383 6.383 24 C 0.032 3.968 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.404 0.596 33 H 0.270 0.730 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -1.230 -15.534 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.051 3.949 4 H 0.130 0.870 5 C 0.005 3.995 6 O -0.376 6.376 7 N -0.143 5.143 8 N -0.129 5.129 9 N -0.155 5.155 10 C 0.000 4.000 11 C -0.493 4.493 12 H 0.110 0.890 13 C -0.194 4.194 14 N -0.456 5.456 15 Si 0.800 3.200 16 H -0.176 1.176 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.251 4.251 20 C 0.130 3.870 21 H 0.092 0.908 22 C -0.193 4.193 23 O -0.301 6.301 24 C -0.064 4.064 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.039 0.961 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 1.626 -2.301 -14.457 14.729 hybrid contribution 0.286 1.020 0.430 1.143 sum 1.913 -1.281 -14.027 14.215 Atomic orbital electron populations 1.21724 0.95081 1.02602 1.00895 1.21770 0.96764 0.93599 1.03402 1.21291 0.95270 0.95663 0.82649 0.87018 1.22050 0.93546 0.97712 0.86167 1.86307 1.31026 1.86563 1.33735 1.49694 1.36587 1.21062 1.06980 1.81320 1.24419 1.22985 0.84216 1.75087 1.12072 1.04592 1.23729 1.19409 0.97480 0.95232 0.87907 1.18979 1.29112 1.09565 0.91681 0.88955 1.26729 0.95616 0.98976 0.98102 1.70186 1.35379 1.34520 1.05548 0.85212 0.78196 0.78150 0.78415 1.17610 1.19920 1.20026 1.22547 1.08478 0.96396 0.97680 1.20049 0.96017 0.79897 0.91079 0.90791 1.21783 0.92804 1.01861 1.02894 1.88002 1.41380 1.22431 1.78279 1.22828 0.86302 0.99792 0.97481 0.91051 0.90813 0.96099 0.87447 0.92812 0.94045 0.93199 0.74474 0.91997 0.89494 0.91014 0.93276 0.91786 0.88683 0.96556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.74 71.98 0.70 -3.34 16 2 C -0.12 -3.31 5.51 30.60 0.17 -3.14 16 3 C 0.15 4.82 2.78 44.99 0.12 4.94 16 4 H 0.11 3.08 6.52 -2.39 -0.02 3.07 16 5 C 0.08 2.33 6.69 71.98 0.48 2.81 16 6 O -0.57 -11.71 13.13 -148.98 -1.96 -13.67 16 7 N -0.35 -14.70 2.83 -311.25 -0.88 -15.58 16 8 N -0.15 -8.07 13.62 37.02 0.50 -7.56 16 9 N -0.28 -17.14 10.55 -52.51 -0.55 -17.70 16 10 C 0.13 7.41 6.69 39.67 0.27 7.68 16 11 C -0.46 -25.93 8.71 23.43 0.20 -25.72 16 12 H 0.09 5.03 6.61 -2.91 -0.02 5.01 16 13 C 0.02 1.06 5.49 85.18 0.47 1.53 16 14 N -0.83 -49.60 11.92 21.79 0.26 -49.34 16 15 Si 0.98 42.50 29.56 68.60 2.03 44.52 16 16 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 C -0.12 -5.33 6.04 42.26 0.26 -5.07 16 20 C 0.19 6.85 2.88 29.85 0.09 6.93 16 21 H 0.07 2.20 6.31 -2.39 -0.02 2.18 16 22 C -0.14 -4.39 9.54 71.98 0.69 -3.70 16 23 O -0.38 -14.61 8.76 -148.98 -1.31 -15.91 16 24 C 0.03 0.97 10.81 113.37 1.23 2.20 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.02 0.73 7.90 -2.39 -0.02 0.71 16 28 H 0.11 2.46 7.71 -2.39 -0.02 2.44 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.40 4.47 9.12 -74.06 -0.68 3.80 16 33 H 0.27 14.96 8.30 -92.71 -0.77 14.19 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.88 7.93 -2.38 -0.02 1.86 16 37 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 38 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -74.97 328.34 3.14 -71.83 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.38 Total: 18.30 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 4.67 Total: -14.89 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -0.67 Total: -90.18 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -3.26 Total: -29.58 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -74.97 3.14 -71.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545327.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.245 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds