Wall clock time and date at job start Mon Mar 30 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00225 * 2 1 4 4 H 1.09001 * 109.47248 * 29.99903 * 3 2 1 5 5 C 1.53004 * 109.46910 * 149.99762 * 3 2 1 6 6 C 1.50700 * 109.47120 * 269.99625 * 3 2 1 7 7 C 1.39013 * 126.77180 * 314.97639 * 6 3 2 8 8 C 1.41485 * 126.02049 * 359.76910 * 7 6 3 9 9 H 1.08002 * 120.00412 * 353.79402 * 8 7 6 10 10 C 1.39747 * 120.00091 * 173.79337 * 8 7 6 11 11 N 1.30988 * 119.99301 * 5.83935 * 10 8 7 12 12 Si 1.86794 * 120.00346 * 185.83574 * 10 8 7 13 13 H 1.48500 * 109.47140 * 94.98402 * 12 10 8 14 14 H 1.48498 * 109.47346 * 214.98410 * 12 10 8 15 15 H 1.48504 * 109.47060 * 334.98705 * 12 10 8 16 16 N 1.34840 * 107.95780 * 180.02562 * 7 6 3 17 17 N 1.28675 * 109.63609 * 359.97438 * 16 7 6 18 18 N 1.35020 * 126.76928 * 135.01860 * 6 3 2 19 19 C 1.46499 * 126.49488 * 359.94687 * 18 6 3 20 20 H 1.09003 * 109.47022 * 359.97438 * 19 18 6 21 21 C 1.53003 * 109.46875 * 240.00247 * 19 18 6 22 22 C 1.52997 * 109.47556 * 119.99939 * 19 18 6 23 23 C 1.53002 * 109.47241 * 185.00117 * 22 19 18 24 24 O 1.42899 * 109.46945 * 179.97438 * 23 22 19 25 25 H 1.09001 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47148 * 300.00533 * 1 2 3 27 27 H 1.09007 * 109.46842 * 59.99665 * 1 2 3 28 28 H 1.09000 * 109.46988 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47005 * 299.99789 * 5 3 2 30 30 H 1.09001 * 109.47050 * 60.00020 * 5 3 2 31 31 H 0.97006 * 119.99209 * 179.97438 * 11 10 8 32 32 H 1.09003 * 109.46646 * 299.99434 * 21 19 18 33 33 H 1.08990 * 109.47532 * 59.99880 * 21 19 18 34 34 H 1.09003 * 109.46641 * 179.97438 * 21 19 18 35 35 H 1.09002 * 109.46905 * 305.00274 * 22 19 18 36 36 H 1.08994 * 109.46908 * 64.99498 * 22 19 18 37 37 H 1.09000 * 109.46805 * 299.99767 * 23 22 19 38 38 H 1.08996 * 109.46941 * 59.99867 * 23 22 19 39 39 H 0.96693 * 114.00127 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 3.3590 1.2631 0.7213 6 6 2.2147 1.7643 -1.4208 7 6 2.7454 1.0193 -2.4677 8 6 3.1999 -0.3183 -2.3903 9 1 3.2444 -0.8192 -1.4345 10 6 3.5912 -0.9915 -3.5508 11 7 3.6466 -0.3512 -4.6921 12 14 4.0354 -2.8042 -3.4742 13 1 2.8461 -3.6207 -3.8266 14 1 5.1318 -3.0863 -4.4352 15 1 4.4814 -3.1469 -2.0998 16 7 2.7559 1.7980 -3.5685 17 7 2.2755 2.9571 -3.2829 18 7 1.9193 2.9803 -1.9279 19 6 1.3357 4.1096 -1.1997 20 1 1.1673 3.8243 -0.1612 21 6 0.0032 4.4978 -1.8438 22 6 2.2942 5.3009 -1.2528 23 6 1.7433 6.4376 -0.3894 24 8 2.6389 7.5501 -0.4386 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.8021 2.2589 0.7217 29 1 3.2111 0.9312 1.7490 30 1 4.0242 0.5691 0.2075 31 1 3.9186 -0.8184 -5.4975 32 1 0.1713 4.7830 -2.8823 33 1 -0.6796 3.6492 -1.8059 34 1 -0.4312 5.3378 -1.3016 35 1 3.2710 4.9984 -0.8752 36 1 2.3928 5.6422 -2.2832 37 1 0.7665 6.7401 -0.7670 38 1 1.6447 6.0962 0.6410 39 1 2.3521 8.3094 0.0870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:09 Heat of formation + Delta-G solvation = -40.458288 kcal Electronic energy + Delta-G solvation = -21697.532002 eV Core-core repulsion = 18448.222097 eV Total energy + Delta-G solvation = -3249.309905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99085 -38.76900 -38.48708 -36.60612 -35.08051 -33.47891 -31.89288 -30.36396 -29.41883 -27.22267 -27.00995 -25.41276 -24.13750 -23.14431 -21.32960 -20.63285 -19.01239 -18.10848 -17.53129 -17.36301 -16.61576 -16.44038 -16.19113 -15.85568 -15.48193 -15.04154 -14.69856 -14.35650 -14.14768 -13.92134 -13.40450 -13.23432 -13.19824 -12.93017 -12.87068 -12.74472 -12.46365 -12.44461 -12.31537 -12.12747 -11.94240 -11.68483 -11.54603 -11.13806 -10.84171 -10.83260 -10.45427 -10.29913 -9.33948 -8.27752 -6.11566 0.96668 1.43371 1.44002 1.58395 1.89273 2.35024 2.37019 3.05173 3.21826 3.57570 3.63788 3.84326 3.96038 4.09459 4.11629 4.21156 4.33705 4.43524 4.47577 4.55184 4.66010 4.69158 4.74814 4.82901 4.87991 4.91177 4.96170 5.07525 5.13107 5.18134 5.29597 5.40981 5.52360 5.61053 6.38462 6.51659 6.56384 6.94453 6.95556 7.16339 8.31457 8.72020 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021475 B = 0.006087 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.512504 B = 4598.850955 C = 5167.731348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.190 3.810 4 H 0.082 0.918 5 C -0.136 4.136 6 C -0.122 4.122 7 C 0.128 3.872 8 C -0.457 4.457 9 H 0.091 0.909 10 C 0.018 3.982 11 N -0.830 5.830 12 Si 0.981 3.019 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.253 1.253 16 N -0.290 5.290 17 N -0.158 5.158 18 N -0.351 5.351 19 C 0.153 3.847 20 H 0.122 0.878 21 C -0.153 4.153 22 C -0.121 4.121 23 C 0.087 3.913 24 O -0.598 6.598 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.015 0.985 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.270 0.730 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 8.656 15.066 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.130 3.870 4 H 0.100 0.900 5 C -0.193 4.193 6 C -0.256 4.256 7 C -0.004 4.004 8 C -0.493 4.493 9 H 0.109 0.891 10 C -0.195 4.195 11 N -0.458 5.458 12 Si 0.803 3.197 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.176 1.176 16 N -0.160 5.160 17 N -0.134 5.134 18 N -0.148 5.148 19 C 0.051 3.949 20 H 0.139 0.861 21 C -0.211 4.211 22 C -0.160 4.160 23 C 0.009 3.991 24 O -0.408 6.408 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.034 0.966 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.590 8.932 13.118 17.591 hybrid contribution -0.134 -0.729 0.321 0.808 sum -7.724 8.203 13.438 17.537 Atomic orbital electron populations 1.22838 0.80695 1.03296 0.99605 1.88006 1.20458 1.27373 1.94331 1.20070 0.96006 0.84566 0.86334 0.89995 1.21774 0.94898 1.02295 1.00382 1.22686 1.15278 0.88267 0.99386 1.19473 0.98695 0.95694 0.86546 1.18909 1.40610 0.94807 0.94994 0.89075 1.26760 0.93872 1.04293 0.94577 1.70208 1.37242 1.38287 1.00105 0.85216 0.78102 0.77243 0.79176 1.19520 1.20325 1.17633 1.75085 1.16954 0.98147 1.25820 1.81315 1.21734 1.17608 0.92730 1.49987 1.45673 1.10376 1.08778 1.21407 0.93531 0.83667 0.96279 0.86057 1.22167 0.94400 1.02968 1.01594 1.21713 0.98559 0.94433 1.01325 1.22129 0.92344 0.85482 0.99127 1.86450 1.51409 1.27771 1.75142 0.88895 0.91382 0.96579 0.91267 0.89219 0.93533 0.92023 0.93384 0.92768 0.86613 0.93086 0.92788 0.90798 0.90789 0.74815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 10.81 113.37 1.23 2.16 16 2 O -0.38 -14.48 8.91 -148.98 -1.33 -15.80 16 3 C 0.19 6.75 2.86 29.85 0.09 6.84 16 4 H 0.08 2.24 6.30 -2.39 -0.02 2.23 16 5 C -0.14 -4.36 9.54 71.98 0.69 -3.67 16 6 C -0.12 -5.63 6.04 42.25 0.26 -5.38 16 7 C 0.13 7.38 6.68 39.67 0.27 7.64 16 8 C -0.46 -26.33 8.61 23.44 0.20 -26.13 16 9 H 0.09 5.02 6.52 -2.91 -0.02 5.00 16 10 C 0.02 1.02 5.49 85.18 0.47 1.49 16 11 N -0.83 -50.73 11.95 21.80 0.26 -50.47 16 12 Si 0.98 43.12 29.56 68.60 2.03 45.14 16 13 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 14 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 16 N -0.29 -18.01 10.58 -52.52 -0.56 -18.56 16 17 N -0.16 -8.62 13.62 37.02 0.50 -8.11 16 18 N -0.35 -15.24 3.29 -311.27 -1.02 -16.27 16 19 C 0.15 4.47 3.15 44.99 0.14 4.61 16 20 H 0.12 2.72 6.52 -2.39 -0.02 2.70 16 21 C -0.15 -3.81 9.22 71.98 0.66 -3.15 16 22 C -0.12 -3.45 5.32 30.59 0.16 -3.29 16 23 C 0.09 1.55 6.80 71.98 0.49 2.04 16 24 O -0.60 -12.08 13.66 -148.98 -2.03 -14.11 16 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 27 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.79 7.61 -2.39 -0.02 1.78 16 31 H 0.27 15.27 8.30 -92.70 -0.77 14.50 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.74 6.57 -2.39 -0.02 1.73 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 0.98 6.57 -2.39 -0.02 0.97 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.40 3.51 9.12 -74.06 -0.68 2.83 16 Total: -1.00 -82.14 326.28 2.88 -79.26 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.38 Total: 15.76 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.65 Total: -16.83 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -0.81 Total: -93.42 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -3.36 Total: -29.92 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -82.14 2.88 -79.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.804 kcal (2) G-P(sol) polarization free energy of solvation -82.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds