Wall clock time and date at job start Mon Mar 30 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99737 * 2 1 4 4 H 1.08995 * 109.47480 * 329.99561 * 3 2 1 5 5 C 1.53007 * 109.46914 * 209.99729 * 3 2 1 6 6 C 1.50701 * 109.47350 * 90.00250 * 3 2 1 7 7 C 1.39017 * 126.77395 * 45.01572 * 6 3 2 8 8 C 1.41485 * 126.02101 * 359.95203 * 7 6 3 9 9 H 1.08000 * 119.99831 * 359.97438 * 8 7 6 10 10 C 1.39734 * 120.00168 * 179.97438 * 8 7 6 11 11 N 1.30987 * 119.99958 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00243 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47093 * 89.99629 * 12 10 8 14 14 H 1.48497 * 109.47014 * 209.99710 * 12 10 8 15 15 H 1.48500 * 109.46839 * 329.99808 * 12 10 8 16 16 N 1.34837 * 107.95433 * 179.97438 * 7 6 3 17 17 N 1.28669 * 109.64245 * 359.75395 * 16 7 6 18 18 N 1.35022 * 126.76828 * 225.00183 * 6 3 2 19 19 C 1.46503 * 126.49437 * 359.97438 * 18 6 3 20 20 H 1.08993 * 109.46868 * 0.02562 * 19 18 6 21 21 C 1.53001 * 109.46909 * 120.00390 * 19 18 6 22 22 C 1.52998 * 109.46935 * 240.00491 * 19 18 6 23 23 C 1.52999 * 109.46788 * 175.00115 * 22 19 18 24 24 O 1.42903 * 109.47256 * 180.02562 * 23 22 19 25 25 H 1.09005 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46964 * 300.00388 * 1 2 3 27 27 H 1.08994 * 109.47238 * 60.00469 * 1 2 3 28 28 H 1.09004 * 109.46749 * 300.00286 * 5 3 2 29 29 H 1.08996 * 109.46680 * 59.99428 * 5 3 2 30 30 H 1.08998 * 109.47188 * 180.02562 * 5 3 2 31 31 H 0.96998 * 120.00077 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47304 * 299.99800 * 21 19 18 33 33 H 1.09002 * 109.46869 * 60.00054 * 21 19 18 34 34 H 1.08996 * 109.46905 * 180.02562 * 21 19 18 35 35 H 1.08997 * 109.47384 * 54.99959 * 22 19 18 36 36 H 1.08997 * 109.47329 * 294.99702 * 22 19 18 37 37 H 1.08997 * 109.47286 * 59.99783 * 23 22 19 38 38 H 1.09008 * 109.47201 * 299.99563 * 23 22 19 39 39 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3590 1.2632 -0.7212 6 6 2.2146 1.7644 1.4208 7 6 2.7452 1.0195 2.4678 8 6 3.1945 -0.3199 2.3919 9 1 3.1403 -0.8555 1.4557 10 6 3.7085 -0.9499 3.5284 11 7 3.7748 -0.3002 4.6639 12 14 4.3011 -2.7186 3.4284 13 1 5.7421 -2.7384 3.0700 14 1 4.1092 -3.3801 4.7440 15 1 3.5232 -3.4434 2.3917 16 7 2.7556 1.7983 3.5685 17 7 2.2806 2.9592 3.2814 18 7 1.9187 2.9803 1.9279 19 6 1.3360 4.1099 1.1993 20 1 1.1688 3.8249 0.1607 21 6 0.0030 4.4982 1.8421 22 6 2.2947 5.3010 1.2538 23 6 1.7449 6.4380 0.3902 24 8 2.6406 7.5504 0.4406 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 4.0242 0.5693 -0.2073 29 1 3.2112 0.9312 -1.7488 30 1 3.8025 2.2589 -0.7209 31 1 4.1319 -0.7374 5.4527 32 1 -0.6800 3.6496 1.8032 33 1 0.1699 4.7830 2.8809 34 1 -0.4308 5.3383 1.2998 35 1 3.2718 4.9985 0.8773 36 1 2.3922 5.6421 2.2845 37 1 0.7678 6.7405 0.7668 38 1 1.6475 6.0969 -0.6405 39 1 2.3545 8.3099 -0.0851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:12 Heat of formation + Delta-G solvation = -12.680008 kcal Electronic energy + Delta-G solvation = -21694.525547 eV Core-core repulsion = 18446.420199 eV Total energy + Delta-G solvation = -3248.105348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12860 -37.45681 -37.24409 -35.31650 -33.15319 -31.89107 -30.27376 -28.53010 -28.23413 -25.90396 -25.16490 -24.05823 -22.52410 -21.67153 -19.57027 -19.03565 -17.67612 -16.68303 -16.04792 -15.78338 -15.41826 -14.73213 -14.65159 -14.33144 -13.98430 -13.69159 -13.54075 -12.87131 -12.68022 -12.47087 -12.05969 -11.92268 -11.67141 -11.37496 -11.23174 -11.16740 -11.13982 -11.00594 -10.89697 -10.71485 -10.35961 -10.11461 -10.00282 -9.67947 -9.21944 -9.13056 -8.71494 -8.43879 -7.35986 -6.29776 -4.05832 2.80298 3.22044 3.26800 3.31700 3.46679 4.18776 4.21933 4.35955 4.46211 4.83392 5.03512 5.14023 5.23530 5.27376 5.40704 5.48047 5.57802 5.62300 5.71852 5.79589 5.87003 5.89197 6.03502 6.04843 6.11446 6.27443 6.30933 6.36309 6.40324 6.82302 6.99726 7.21643 7.32067 7.50002 7.59502 7.91730 8.19754 8.65347 8.91537 9.19686 10.26096 10.66871 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.006105 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.242190 B = 4585.661164 C = 5156.661637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.195 3.805 4 H 0.040 0.960 5 C -0.140 4.140 6 C -0.159 4.159 7 C 0.174 3.826 8 C -0.432 4.432 9 H 0.091 0.909 10 C 0.070 3.930 11 N -0.778 5.778 12 Si 0.905 3.095 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.263 1.263 16 N -0.232 5.232 17 N -0.119 5.119 18 N -0.371 5.371 19 C 0.169 3.831 20 H 0.085 0.915 21 C -0.160 4.160 22 C -0.127 4.127 23 C 0.079 3.921 24 O -0.572 6.572 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.027 0.973 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.270 0.730 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 7.849 -11.298 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.135 3.865 4 H 0.058 0.942 5 C -0.197 4.197 6 C -0.289 4.289 7 C 0.046 3.954 8 C -0.468 4.468 9 H 0.109 0.891 10 C -0.149 4.149 11 N -0.404 5.404 12 Si 0.730 3.270 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.187 1.187 16 N -0.105 5.105 17 N -0.096 5.096 18 N -0.170 5.170 19 C 0.064 3.936 20 H 0.103 0.897 21 C -0.218 4.218 22 C -0.165 4.165 23 C 0.001 3.999 24 O -0.377 6.377 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.916 8.035 -9.345 13.671 hybrid contribution -0.411 -0.677 -1.279 1.504 sum -6.328 7.358 -10.624 14.389 Atomic orbital electron populations 1.22613 0.82594 1.01890 0.98808 1.88019 1.18267 1.27166 1.94454 1.19727 0.94025 0.83735 0.89021 0.94167 1.21788 0.96637 1.02379 0.98931 1.21774 1.20451 0.88680 0.97973 1.18926 0.96497 0.94748 0.85278 1.18737 1.36986 0.94283 0.96802 0.89075 1.25857 0.94689 0.99260 0.95079 1.70035 1.33819 1.36507 1.00066 0.86372 0.79477 0.82979 0.78127 1.19904 1.20716 1.18748 1.75135 1.14629 0.96957 1.23801 1.81435 1.19242 1.18205 0.90703 1.49433 1.48562 1.09238 1.09750 1.20740 0.92628 0.85151 0.95066 0.89663 1.22186 0.95853 1.01362 1.02418 1.21818 0.99603 0.93077 1.02026 1.22201 0.92181 0.86937 0.98587 1.86519 1.50597 1.26570 1.74056 0.90278 0.94458 0.95403 0.90345 0.92945 0.92232 0.91912 0.92240 0.91000 0.91605 0.90762 0.89815 0.93207 0.93725 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.81 101.05 1.09 1.70 16 2 O -0.36 -7.23 8.79 -35.23 -0.31 -7.54 16 3 C 0.19 3.73 2.87 -27.88 -0.08 3.65 16 4 H 0.04 0.66 6.30 -51.93 -0.33 0.34 16 5 C -0.14 -2.42 9.54 37.16 0.35 -2.07 16 6 C -0.16 -3.70 6.04 -80.90 -0.49 -4.19 16 7 C 0.17 4.85 6.69 -85.02 -0.57 4.28 16 8 C -0.43 -12.01 8.68 -37.79 -0.33 -12.34 16 9 H 0.09 2.44 6.58 -52.49 -0.35 2.10 16 10 C 0.07 1.90 5.49 -17.35 -0.10 1.80 16 11 N -0.78 -22.45 11.92 55.54 0.66 -21.79 16 12 Si 0.90 20.24 29.56 -169.99 -5.02 15.21 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 16 N -0.23 -6.81 10.55 32.05 0.34 -6.47 16 17 N -0.12 -3.10 13.62 60.35 0.82 -2.28 16 18 N -0.37 -8.09 3.29 -49.74 -0.16 -8.26 16 19 C 0.17 2.69 3.15 -67.93 -0.21 2.47 16 20 H 0.09 1.18 6.52 -51.93 -0.34 0.85 16 21 C -0.16 -2.21 9.22 37.16 0.34 -1.87 16 22 C -0.13 -1.90 5.32 -26.73 -0.14 -2.05 16 23 C 0.08 0.87 6.80 37.16 0.25 1.12 16 24 O -0.57 -6.65 13.66 -35.23 -0.48 -7.13 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.08 1.54 7.86 -51.93 -0.41 1.14 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.27 7.19 8.30 -40.82 -0.34 6.85 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.67 6.57 -51.93 -0.34 0.33 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.05 0.46 6.57 -51.93 -0.34 0.12 16 38 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.38 2.34 9.12 45.56 0.42 2.76 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -34.27 326.51 -4.16 -38.43 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.05 Total: 2.39 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 0.13 Total: -7.48 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 1.66 Total: -38.80 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.79 Total: -14.67 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.27 -4.16 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.750 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds