Wall clock time and date at job start Mon Mar 30 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99737 * 2 1 4 4 H 1.08995 * 109.47480 * 329.99561 * 3 2 1 5 5 C 1.53007 * 109.46914 * 209.99729 * 3 2 1 6 6 C 1.50701 * 109.47350 * 90.00250 * 3 2 1 7 7 C 1.39017 * 126.77395 * 45.01572 * 6 3 2 8 8 C 1.41485 * 126.02101 * 359.95203 * 7 6 3 9 9 H 1.08000 * 119.99831 * 359.97438 * 8 7 6 10 10 C 1.39734 * 120.00168 * 179.97438 * 8 7 6 11 11 N 1.30987 * 119.99958 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00243 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47093 * 89.99629 * 12 10 8 14 14 H 1.48497 * 109.47014 * 209.99710 * 12 10 8 15 15 H 1.48500 * 109.46839 * 329.99808 * 12 10 8 16 16 N 1.34837 * 107.95433 * 179.97438 * 7 6 3 17 17 N 1.28669 * 109.64245 * 359.75395 * 16 7 6 18 18 N 1.35022 * 126.76828 * 225.00183 * 6 3 2 19 19 C 1.46503 * 126.49437 * 359.97438 * 18 6 3 20 20 H 1.08993 * 109.46868 * 0.02562 * 19 18 6 21 21 C 1.53001 * 109.46909 * 120.00390 * 19 18 6 22 22 C 1.52998 * 109.46935 * 240.00491 * 19 18 6 23 23 C 1.52999 * 109.46788 * 175.00115 * 22 19 18 24 24 O 1.42903 * 109.47256 * 180.02562 * 23 22 19 25 25 H 1.09005 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46964 * 300.00388 * 1 2 3 27 27 H 1.08994 * 109.47238 * 60.00469 * 1 2 3 28 28 H 1.09004 * 109.46749 * 300.00286 * 5 3 2 29 29 H 1.08996 * 109.46680 * 59.99428 * 5 3 2 30 30 H 1.08998 * 109.47188 * 180.02562 * 5 3 2 31 31 H 0.96998 * 120.00077 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47304 * 299.99800 * 21 19 18 33 33 H 1.09002 * 109.46869 * 60.00054 * 21 19 18 34 34 H 1.08996 * 109.46905 * 180.02562 * 21 19 18 35 35 H 1.08997 * 109.47384 * 54.99959 * 22 19 18 36 36 H 1.08997 * 109.47329 * 294.99702 * 22 19 18 37 37 H 1.08997 * 109.47286 * 59.99783 * 23 22 19 38 38 H 1.09008 * 109.47201 * 299.99563 * 23 22 19 39 39 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3590 1.2632 -0.7212 6 6 2.2146 1.7644 1.4208 7 6 2.7452 1.0195 2.4678 8 6 3.1945 -0.3199 2.3919 9 1 3.1403 -0.8555 1.4557 10 6 3.7085 -0.9499 3.5284 11 7 3.7748 -0.3002 4.6639 12 14 4.3011 -2.7186 3.4284 13 1 5.7421 -2.7384 3.0700 14 1 4.1092 -3.3801 4.7440 15 1 3.5232 -3.4434 2.3917 16 7 2.7556 1.7983 3.5685 17 7 2.2806 2.9592 3.2814 18 7 1.9187 2.9803 1.9279 19 6 1.3360 4.1099 1.1993 20 1 1.1688 3.8249 0.1607 21 6 0.0030 4.4982 1.8421 22 6 2.2947 5.3010 1.2538 23 6 1.7449 6.4380 0.3902 24 8 2.6406 7.5504 0.4406 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 4.0242 0.5693 -0.2073 29 1 3.2112 0.9312 -1.7488 30 1 3.8025 2.2589 -0.7209 31 1 4.1319 -0.7374 5.4527 32 1 -0.6800 3.6496 1.8032 33 1 0.1699 4.7830 2.8809 34 1 -0.4308 5.3383 1.2998 35 1 3.2718 4.9985 0.8773 36 1 2.3922 5.6421 2.2845 37 1 0.7678 6.7405 0.7668 38 1 1.6475 6.0969 -0.6405 39 1 2.3545 8.3099 -0.0851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:11 Heat of formation + Delta-G solvation = -40.465913 kcal Electronic energy + Delta-G solvation = -21695.730435 eV Core-core repulsion = 18446.420199 eV Total energy + Delta-G solvation = -3249.310235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98820 -38.77353 -38.48684 -36.60569 -35.07977 -33.47486 -31.88749 -30.36593 -29.41836 -27.22784 -27.00504 -25.40944 -24.13614 -23.14482 -21.32912 -20.63297 -19.01161 -18.10435 -17.53087 -17.36333 -16.61422 -16.43916 -16.19139 -15.85907 -15.48234 -15.04025 -14.69867 -14.35552 -14.14848 -13.91411 -13.39240 -13.23699 -13.19886 -12.89184 -12.86347 -12.76906 -12.46049 -12.44056 -12.32304 -12.13138 -11.94441 -11.68692 -11.54084 -11.14300 -10.84435 -10.83152 -10.45288 -10.29740 -9.34396 -8.27078 -6.11678 0.96893 1.43432 1.44452 1.58294 1.89529 2.35600 2.36601 3.04828 3.21699 3.59282 3.63712 3.84330 3.96214 4.09517 4.11643 4.21233 4.33670 4.43792 4.47533 4.55062 4.65977 4.69249 4.74934 4.83333 4.87912 4.91160 4.96300 5.07502 5.13215 5.18229 5.29799 5.41900 5.52562 5.61169 6.38399 6.51618 6.57340 6.94531 6.95493 7.16516 8.31887 8.72358 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.006105 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.242190 B = 4585.661164 C = 5156.661637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.191 3.809 4 H 0.082 0.918 5 C -0.136 4.136 6 C -0.122 4.122 7 C 0.128 3.872 8 C -0.458 4.458 9 H 0.093 0.907 10 C 0.017 3.983 11 N -0.830 5.830 12 Si 0.980 3.020 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.254 1.254 16 N -0.290 5.290 17 N -0.158 5.158 18 N -0.351 5.351 19 C 0.153 3.847 20 H 0.122 0.878 21 C -0.153 4.153 22 C -0.121 4.121 23 C 0.087 3.913 24 O -0.599 6.599 25 H 0.092 0.908 26 H 0.016 0.984 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.270 0.730 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.104 8.614 -15.046 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.130 3.870 4 H 0.100 0.900 5 C -0.193 4.193 6 C -0.257 4.257 7 C -0.004 4.004 8 C -0.494 4.494 9 H 0.111 0.889 10 C -0.196 4.196 11 N -0.458 5.458 12 Si 0.802 3.198 13 H -0.192 1.192 14 H -0.204 1.204 15 H -0.178 1.178 16 N -0.160 5.160 17 N -0.134 5.134 18 N -0.148 5.148 19 C 0.051 3.949 20 H 0.139 0.861 21 C -0.211 4.211 22 C -0.160 4.160 23 C 0.009 3.991 24 O -0.408 6.408 25 H 0.111 0.889 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.582 8.890 -13.096 17.551 hybrid contribution -0.043 -0.698 -0.338 0.777 sum -7.625 8.192 -13.434 17.485 Atomic orbital electron populations 1.22837 0.80677 1.03289 0.99633 1.88003 1.20484 1.27414 1.94337 1.20068 0.96008 0.84532 0.86346 0.90010 1.21770 0.94905 1.02300 1.00373 1.22681 1.15586 0.88166 0.99253 1.19479 0.98635 0.95789 0.86497 1.18948 1.38354 0.94908 0.97204 0.88904 1.26770 0.94619 1.03744 0.94428 1.70198 1.36177 1.38550 1.00924 0.85235 0.79045 0.77283 0.78217 1.19192 1.20370 1.17797 1.75082 1.17036 0.98209 1.25649 1.81315 1.21617 1.17610 0.92857 1.49990 1.45573 1.10342 1.08920 1.21405 0.93544 0.83655 0.96275 0.86066 1.22166 0.94385 1.02974 1.01595 1.21712 0.98551 0.94449 1.01323 1.22132 0.92350 0.85478 0.99122 1.86453 1.51453 1.27766 1.75110 0.88917 0.96539 0.91371 0.93476 0.89217 0.91306 0.92025 0.92743 0.93387 0.86618 0.93117 0.92790 0.90785 0.90792 0.74813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 10.81 113.37 1.23 2.16 16 2 O -0.38 -14.50 8.79 -148.98 -1.31 -15.81 16 3 C 0.19 6.76 2.87 29.85 0.09 6.85 16 4 H 0.08 2.24 6.30 -2.39 -0.02 2.22 16 5 C -0.14 -4.36 9.54 71.98 0.69 -3.67 16 6 C -0.12 -5.67 6.04 42.26 0.26 -5.41 16 7 C 0.13 7.38 6.69 39.67 0.27 7.65 16 8 C -0.46 -26.39 8.68 23.43 0.20 -26.18 16 9 H 0.09 5.10 6.58 -2.91 -0.02 5.09 16 10 C 0.02 0.98 5.49 85.18 0.47 1.45 16 11 N -0.83 -50.75 11.92 21.79 0.26 -50.49 16 12 Si 0.98 43.05 29.56 68.60 2.03 45.07 16 13 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 14 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 16 N -0.29 -18.00 10.55 -52.52 -0.55 -18.55 16 17 N -0.16 -8.63 13.62 37.02 0.50 -8.13 16 18 N -0.35 -15.26 3.29 -311.27 -1.02 -16.28 16 19 C 0.15 4.48 3.15 44.99 0.14 4.62 16 20 H 0.12 2.72 6.52 -2.39 -0.02 2.71 16 21 C -0.15 -3.81 9.22 71.98 0.66 -3.14 16 22 C -0.12 -3.46 5.32 30.59 0.16 -3.30 16 23 C 0.09 1.56 6.80 71.98 0.49 2.05 16 24 O -0.60 -12.12 13.66 -148.98 -2.04 -14.16 16 25 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 26 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 28 H 0.05 1.82 7.86 -2.38 -0.02 1.80 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.27 15.29 8.30 -92.71 -0.77 14.52 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 1.74 6.57 -2.39 -0.02 1.72 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 0.99 6.57 -2.39 -0.02 0.97 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.40 3.53 9.12 -74.06 -0.68 2.85 16 Total: -1.00 -82.17 326.51 2.90 -79.27 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.38 Total: 16.01 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.65 Total: -16.94 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -0.81 Total: -93.45 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -3.34 Total: -29.97 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -82.17 2.90 -79.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.807 kcal (2) G-P(sol) polarization free energy of solvation -82.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds