Wall clock time and date at job start Mon Mar 30 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99705 * 2 1 4 4 H 1.08997 * 109.47369 * 29.99713 * 3 2 1 5 5 C 1.52998 * 109.47006 * 150.00317 * 3 2 1 6 6 C 1.50703 * 109.46812 * 269.99643 * 3 2 1 7 7 C 1.39017 * 126.77355 * 314.97631 * 6 3 2 8 8 C 1.41485 * 126.02101 * 359.97438 * 7 6 3 9 9 H 1.08000 * 119.99831 * 359.97438 * 8 7 6 10 10 C 1.39734 * 120.00168 * 179.97438 * 8 7 6 11 11 N 1.30987 * 119.99958 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00243 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47093 * 89.99629 * 12 10 8 14 14 H 1.48497 * 109.47014 * 209.99710 * 12 10 8 15 15 H 1.48500 * 109.46839 * 329.99808 * 12 10 8 16 16 N 1.34837 * 107.95433 * 180.02562 * 7 6 3 17 17 N 1.28669 * 109.64245 * 359.75395 * 16 7 6 18 18 N 1.35022 * 126.76867 * 135.00857 * 6 3 2 19 19 C 1.46503 * 126.49437 * 359.93681 * 18 6 3 20 20 H 1.08993 * 109.46868 * 0.02562 * 19 18 6 21 21 C 1.53001 * 109.46909 * 120.00390 * 19 18 6 22 22 C 1.52998 * 109.46935 * 240.00491 * 19 18 6 23 23 C 1.52999 * 109.46788 * 175.00115 * 22 19 18 24 24 O 1.42903 * 109.47256 * 180.02562 * 23 22 19 25 25 H 1.09001 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47518 * 300.00220 * 1 2 3 27 27 H 1.09010 * 109.47001 * 60.00304 * 1 2 3 28 28 H 1.09004 * 109.47372 * 180.02562 * 5 3 2 29 29 H 1.09006 * 109.46756 * 299.99803 * 5 3 2 30 30 H 1.08997 * 109.47549 * 59.99507 * 5 3 2 31 31 H 0.96998 * 120.00077 * 180.02562 * 11 10 8 32 32 H 1.08996 * 109.46905 * 180.02562 * 21 19 18 33 33 H 1.08997 * 109.47304 * 299.99800 * 21 19 18 34 34 H 1.09002 * 109.46869 * 60.00054 * 21 19 18 35 35 H 1.08997 * 109.47384 * 54.99959 * 22 19 18 36 36 H 1.08997 * 109.47329 * 294.99702 * 22 19 18 37 37 H 1.08997 * 109.47286 * 59.99783 * 23 22 19 38 38 H 1.09008 * 109.47201 * 299.99563 * 23 22 19 39 39 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7212 6 6 2.2145 1.7643 -1.4209 7 6 2.7452 1.0194 -2.4678 8 6 3.1961 -0.3195 -2.3914 9 1 3.1438 -0.8543 -1.4545 10 6 3.7090 -0.9500 -3.5281 11 7 3.7720 -0.3016 -4.6644 12 14 4.3050 -2.7175 -3.4271 13 1 3.1791 -3.6376 -3.7290 14 1 5.3954 -2.9293 -4.4127 15 1 4.8143 -2.9907 -2.0591 16 7 2.7556 1.7981 -3.5685 17 7 2.2709 2.9555 -3.2841 18 7 1.9188 2.9802 -1.9280 19 6 1.3347 4.1094 -1.1999 20 1 1.1671 3.8243 -0.1613 21 6 2.2929 5.3010 -1.2531 22 6 0.0022 4.4971 -1.8442 23 6 -0.6672 5.5923 -1.0115 24 8 -1.9120 5.9541 -1.6129 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.8020 2.2592 0.7216 29 1 3.2111 0.9313 1.7489 30 1 4.0241 0.5694 0.2074 31 1 4.1277 -0.7393 -5.4536 32 1 1.8585 6.1409 -0.7110 33 1 3.2421 5.0247 -0.7941 34 1 2.4608 5.5861 -2.2916 35 1 -0.6487 3.6239 -1.8866 36 1 0.1808 4.8666 -2.8540 37 1 -0.0163 6.4655 -0.9691 38 1 -0.8459 5.2228 -0.0016 39 1 -2.3924 6.6456 -1.1372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:14 Heat of formation + Delta-G solvation = -12.721991 kcal Electronic energy + Delta-G solvation = -21715.064244 eV Core-core repulsion = 18466.957075 eV Total energy + Delta-G solvation = -3248.107169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12829 -37.46363 -37.24145 -35.31929 -33.15328 -31.89701 -30.26196 -28.53628 -28.24345 -25.89373 -25.14394 -24.06923 -22.53827 -21.66993 -19.56648 -19.03121 -17.69215 -16.68003 -16.04361 -15.79473 -15.41724 -14.72757 -14.65528 -14.33283 -13.98826 -13.68966 -13.53227 -12.80824 -12.75096 -12.46532 -12.05459 -11.92899 -11.67035 -11.35067 -11.25593 -11.19586 -11.10568 -11.01082 -10.89844 -10.71467 -10.36138 -10.11606 -10.01171 -9.67837 -9.22099 -9.12605 -8.71439 -8.43745 -7.35959 -6.29782 -4.05833 2.80084 3.22330 3.26949 3.31044 3.47351 4.16679 4.21700 4.36731 4.46626 4.82945 5.03423 5.13410 5.22037 5.28573 5.39258 5.48676 5.58118 5.62464 5.72720 5.80937 5.87092 5.89958 6.03731 6.03853 6.13052 6.26786 6.30799 6.36771 6.39664 6.81772 6.99727 7.21677 7.32187 7.48970 7.59504 7.91975 8.19811 8.65308 8.91548 9.19674 10.26125 10.66872 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.006098 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.373809 B = 4590.733144 C = 5096.852483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.195 3.805 4 H 0.040 0.960 5 C -0.139 4.139 6 C -0.159 4.159 7 C 0.174 3.826 8 C -0.432 4.432 9 H 0.091 0.909 10 C 0.070 3.930 11 N -0.778 5.778 12 Si 0.906 3.094 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.264 1.264 16 N -0.232 5.232 17 N -0.119 5.119 18 N -0.371 5.371 19 C 0.169 3.831 20 H 0.085 0.915 21 C -0.160 4.160 22 C -0.127 4.127 23 C 0.079 3.921 24 O -0.573 6.573 25 H 0.079 0.921 26 H 0.027 0.973 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.270 0.730 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 7.988 11.393 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.135 3.865 4 H 0.058 0.942 5 C -0.197 4.197 6 C -0.289 4.289 7 C 0.046 3.954 8 C -0.468 4.468 9 H 0.109 0.891 10 C -0.149 4.149 11 N -0.404 5.404 12 Si 0.731 3.269 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.188 1.188 16 N -0.105 5.105 17 N -0.096 5.096 18 N -0.170 5.170 19 C 0.064 3.936 20 H 0.103 0.897 21 C -0.218 4.218 22 C -0.166 4.166 23 C 0.001 3.999 24 O -0.378 6.378 25 H 0.097 0.903 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.659 8.132 9.408 13.662 hybrid contribution -0.250 -0.622 1.323 1.483 sum -5.909 7.510 10.732 14.369 Atomic orbital electron populations 1.22618 0.82551 1.01906 0.98848 1.88015 1.18286 1.27158 1.94458 1.19728 0.94014 0.83757 0.89024 0.94180 1.21782 0.96639 1.02331 0.98927 1.21775 1.20492 0.88615 0.97994 1.18926 0.96521 0.94686 0.85315 1.18736 1.37014 0.94283 0.96769 0.89078 1.25858 0.94695 0.99249 0.95090 1.70036 1.33975 1.36421 0.99997 0.86360 0.78655 0.83070 0.78768 1.19918 1.20741 1.18808 1.75135 1.14500 0.97065 1.23822 1.81435 1.19312 1.18352 0.90490 1.49433 1.48509 1.09415 1.09627 1.20742 0.92136 0.86073 0.94639 0.89664 1.22181 0.99364 0.96589 1.03641 1.21825 0.95158 0.98603 1.00986 1.22200 0.85048 0.97259 0.95385 1.86518 1.34757 1.60899 1.55584 0.90254 0.95406 0.94431 0.92254 0.92968 0.90342 0.91911 0.91638 0.92043 0.91030 0.90961 0.89788 0.93129 0.93768 0.77665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.81 101.05 1.09 1.71 16 2 O -0.36 -7.26 8.79 -35.23 -0.31 -7.57 16 3 C 0.19 3.73 2.87 -27.88 -0.08 3.65 16 4 H 0.04 0.66 6.30 -51.93 -0.33 0.34 16 5 C -0.14 -2.39 9.54 37.16 0.35 -2.03 16 6 C -0.16 -3.70 6.04 -80.90 -0.49 -4.19 16 7 C 0.17 4.85 6.69 -85.02 -0.57 4.28 16 8 C -0.43 -12.01 8.68 -37.79 -0.33 -12.34 16 9 H 0.09 2.44 6.58 -52.49 -0.35 2.10 16 10 C 0.07 1.90 5.49 -17.35 -0.10 1.80 16 11 N -0.78 -22.45 11.92 55.54 0.66 -21.78 16 12 Si 0.91 20.26 29.56 -169.99 -5.02 15.24 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 16 N -0.23 -6.81 10.55 32.05 0.34 -6.47 16 17 N -0.12 -3.11 13.62 60.35 0.82 -2.28 16 18 N -0.37 -8.09 3.29 -49.74 -0.16 -8.26 16 19 C 0.17 2.69 3.15 -67.93 -0.21 2.47 16 20 H 0.09 1.19 6.51 -51.93 -0.34 0.85 16 21 C -0.16 -2.19 9.22 37.16 0.34 -1.85 16 22 C -0.13 -1.92 5.32 -26.73 -0.14 -2.06 16 23 C 0.08 0.88 6.80 37.16 0.25 1.13 16 24 O -0.57 -6.67 13.66 -35.23 -0.48 -7.15 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.53 7.85 -51.93 -0.41 1.13 16 31 H 0.27 7.19 8.30 -40.82 -0.34 6.85 16 32 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 38 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.38 2.35 9.12 45.56 0.42 2.76 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -34.26 326.49 -4.16 -38.41 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.04 Total: 2.38 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 0.13 Total: -7.43 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 1.66 Total: -38.80 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.79 Total: -14.72 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.26 -4.16 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.691 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds