Wall clock time and date at job start Mon Mar 30 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99705 * 2 1 4 4 H 1.08997 * 109.47369 * 29.99713 * 3 2 1 5 5 C 1.52998 * 109.47006 * 150.00317 * 3 2 1 6 6 C 1.50703 * 109.46812 * 269.99643 * 3 2 1 7 7 C 1.39017 * 126.77355 * 314.97631 * 6 3 2 8 8 C 1.41485 * 126.02101 * 359.97438 * 7 6 3 9 9 H 1.08000 * 119.99831 * 359.97438 * 8 7 6 10 10 C 1.39734 * 120.00168 * 179.97438 * 8 7 6 11 11 N 1.30987 * 119.99958 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00243 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47093 * 89.99629 * 12 10 8 14 14 H 1.48497 * 109.47014 * 209.99710 * 12 10 8 15 15 H 1.48500 * 109.46839 * 329.99808 * 12 10 8 16 16 N 1.34837 * 107.95433 * 180.02562 * 7 6 3 17 17 N 1.28669 * 109.64245 * 359.75395 * 16 7 6 18 18 N 1.35022 * 126.76867 * 135.00857 * 6 3 2 19 19 C 1.46503 * 126.49437 * 359.93681 * 18 6 3 20 20 H 1.08993 * 109.46868 * 0.02562 * 19 18 6 21 21 C 1.53001 * 109.46909 * 120.00390 * 19 18 6 22 22 C 1.52998 * 109.46935 * 240.00491 * 19 18 6 23 23 C 1.52999 * 109.46788 * 175.00115 * 22 19 18 24 24 O 1.42903 * 109.47256 * 180.02562 * 23 22 19 25 25 H 1.09001 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47518 * 300.00220 * 1 2 3 27 27 H 1.09010 * 109.47001 * 60.00304 * 1 2 3 28 28 H 1.09004 * 109.47372 * 180.02562 * 5 3 2 29 29 H 1.09006 * 109.46756 * 299.99803 * 5 3 2 30 30 H 1.08997 * 109.47549 * 59.99507 * 5 3 2 31 31 H 0.96998 * 120.00077 * 180.02562 * 11 10 8 32 32 H 1.08996 * 109.46905 * 180.02562 * 21 19 18 33 33 H 1.08997 * 109.47304 * 299.99800 * 21 19 18 34 34 H 1.09002 * 109.46869 * 60.00054 * 21 19 18 35 35 H 1.08997 * 109.47384 * 54.99959 * 22 19 18 36 36 H 1.08997 * 109.47329 * 294.99702 * 22 19 18 37 37 H 1.08997 * 109.47286 * 59.99783 * 23 22 19 38 38 H 1.09008 * 109.47201 * 299.99563 * 23 22 19 39 39 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7212 6 6 2.2145 1.7643 -1.4209 7 6 2.7452 1.0194 -2.4678 8 6 3.1961 -0.3195 -2.3914 9 1 3.1438 -0.8543 -1.4545 10 6 3.7090 -0.9500 -3.5281 11 7 3.7720 -0.3016 -4.6644 12 14 4.3050 -2.7175 -3.4271 13 1 3.1791 -3.6376 -3.7290 14 1 5.3954 -2.9293 -4.4127 15 1 4.8143 -2.9907 -2.0591 16 7 2.7556 1.7981 -3.5685 17 7 2.2709 2.9555 -3.2841 18 7 1.9188 2.9802 -1.9280 19 6 1.3347 4.1094 -1.1999 20 1 1.1671 3.8243 -0.1613 21 6 2.2929 5.3010 -1.2531 22 6 0.0022 4.4971 -1.8442 23 6 -0.6672 5.5923 -1.0115 24 8 -1.9120 5.9541 -1.6129 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.8020 2.2592 0.7216 29 1 3.2111 0.9313 1.7489 30 1 4.0241 0.5694 0.2074 31 1 4.1277 -0.7393 -5.4536 32 1 1.8585 6.1409 -0.7110 33 1 3.2421 5.0247 -0.7941 34 1 2.4608 5.5861 -2.2916 35 1 -0.6487 3.6239 -1.8866 36 1 0.1808 4.8666 -2.8540 37 1 -0.0163 6.4655 -0.9691 38 1 -0.8459 5.2228 -0.0016 39 1 -2.3924 6.6456 -1.1372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:13 Heat of formation + Delta-G solvation = -40.516526 kcal Electronic energy + Delta-G solvation = -21716.269505 eV Core-core repulsion = 18466.957075 eV Total energy + Delta-G solvation = -3249.312430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98837 -38.77967 -38.49836 -36.61111 -35.08038 -33.48084 -31.88070 -30.36085 -29.43197 -27.24309 -26.98938 -25.40603 -24.15103 -23.14988 -21.32192 -20.63444 -19.02164 -18.11380 -17.53535 -17.36488 -16.63487 -16.43400 -16.19323 -15.86729 -15.49457 -15.04496 -14.70239 -14.31971 -14.18432 -13.91693 -13.39778 -13.22406 -13.18735 -12.88189 -12.85402 -12.77919 -12.48355 -12.41312 -12.32539 -12.15015 -11.94545 -11.69081 -11.54029 -11.14511 -10.85773 -10.83825 -10.46181 -10.29607 -9.34401 -8.27082 -6.11699 0.96733 1.43432 1.44540 1.58082 1.89825 2.35872 2.36305 3.03635 3.20870 3.59521 3.62667 3.85078 3.96277 4.08843 4.10979 4.20497 4.32806 4.42658 4.47409 4.52950 4.64823 4.70886 4.75633 4.84378 4.87369 4.89592 4.96295 5.06698 5.13927 5.19042 5.30027 5.43279 5.52654 5.61174 6.37886 6.50998 6.57264 6.93940 6.94792 7.16485 8.31880 8.72358 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.006098 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.373809 B = 4590.733144 C = 5096.852483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.190 3.810 4 H 0.081 0.919 5 C -0.135 4.135 6 C -0.122 4.122 7 C 0.128 3.872 8 C -0.457 4.457 9 H 0.093 0.907 10 C 0.017 3.983 11 N -0.830 5.830 12 Si 0.981 3.019 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.253 1.253 16 N -0.290 5.290 17 N -0.159 5.159 18 N -0.351 5.351 19 C 0.153 3.847 20 H 0.122 0.878 21 C -0.153 4.153 22 C -0.122 4.122 23 C 0.087 3.913 24 O -0.599 6.599 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.012 0.988 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.270 0.730 32 H 0.115 0.885 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 8.952 15.306 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.129 3.871 4 H 0.098 0.902 5 C -0.192 4.192 6 C -0.257 4.257 7 C -0.004 4.004 8 C -0.494 4.494 9 H 0.111 0.889 10 C -0.196 4.196 11 N -0.459 5.459 12 Si 0.803 3.197 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.176 1.176 16 N -0.160 5.160 17 N -0.134 5.134 18 N -0.148 5.148 19 C 0.051 3.949 20 H 0.139 0.861 21 C -0.211 4.211 22 C -0.161 4.161 23 C 0.009 3.991 24 O -0.408 6.408 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.031 0.969 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.757 9.183 13.324 17.537 hybrid contribution -0.112 -0.721 0.316 0.795 sum -6.870 8.463 13.640 17.460 Atomic orbital electron populations 1.22823 0.80801 1.03284 0.99464 1.88000 1.20320 1.27521 1.94329 1.20097 0.96122 0.84456 0.86377 0.90159 1.21766 0.94694 1.02515 1.00251 1.22682 1.15625 0.88080 0.99297 1.19479 0.98667 0.95723 0.86531 1.18948 1.38375 0.94903 0.97178 0.88897 1.26770 0.94635 1.03721 0.94439 1.70198 1.36324 1.38477 1.00854 0.85229 0.78085 0.77280 0.79142 1.19479 1.20314 1.17613 1.75082 1.16903 0.98335 1.25658 1.81315 1.21666 1.17814 0.92616 1.49990 1.45560 1.10492 1.08785 1.21411 0.92812 0.85123 0.95544 0.86076 1.22162 0.98963 0.96999 1.02949 1.21722 0.94605 0.99270 1.00489 1.22131 0.85167 0.96553 0.95203 1.86453 1.35220 1.62252 1.56886 0.88818 0.91416 0.96894 0.90891 0.89308 0.93501 0.92026 0.86675 0.92367 0.93418 0.93506 0.92773 0.90642 0.90844 0.74791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.81 113.37 1.23 2.21 16 2 O -0.38 -14.61 8.79 -148.98 -1.31 -15.92 16 3 C 0.19 6.73 2.87 29.85 0.09 6.81 16 4 H 0.08 2.22 6.30 -2.39 -0.02 2.20 16 5 C -0.13 -4.23 9.54 71.98 0.69 -3.54 16 6 C -0.12 -5.67 6.04 42.26 0.26 -5.41 16 7 C 0.13 7.39 6.69 39.67 0.27 7.65 16 8 C -0.46 -26.38 8.68 23.43 0.20 -26.17 16 9 H 0.09 5.11 6.58 -2.91 -0.02 5.09 16 10 C 0.02 0.98 5.49 85.18 0.47 1.45 16 11 N -0.83 -50.76 11.92 21.79 0.26 -50.50 16 12 Si 0.98 43.06 29.56 68.60 2.03 45.09 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 16 N -0.29 -18.00 10.55 -52.52 -0.55 -18.56 16 17 N -0.16 -8.64 13.62 37.02 0.50 -8.14 16 18 N -0.35 -15.27 3.29 -311.27 -1.02 -16.29 16 19 C 0.15 4.48 3.15 44.99 0.14 4.62 16 20 H 0.12 2.72 6.51 -2.39 -0.02 2.71 16 21 C -0.15 -3.76 9.22 71.98 0.66 -3.10 16 22 C -0.12 -3.51 5.32 30.59 0.16 -3.34 16 23 C 0.09 1.57 6.80 71.98 0.49 2.06 16 24 O -0.60 -12.18 13.66 -148.98 -2.04 -14.21 16 25 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 27 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.05 1.78 7.85 -2.39 -0.02 1.76 16 31 H 0.27 15.29 8.30 -92.71 -0.77 14.52 16 32 H 0.11 1.71 6.57 -2.39 -0.02 1.69 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 1.00 6.57 -2.39 -0.02 0.99 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.40 3.55 9.12 -74.06 -0.68 2.87 16 Total: -1.00 -82.26 326.49 2.90 -79.36 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.38 Total: 15.92 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 4.65 Total: -16.76 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -0.81 Total: -93.49 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -3.34 Total: -30.13 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -82.26 2.90 -79.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.846 kcal (2) G-P(sol) polarization free energy of solvation -82.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds