Wall clock time and date at job start Mon Mar 30 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.39017 * 126.76869 * 60.02630 * 4 2 1 6 6 C 1.41490 * 126.02348 * 359.97438 * 5 4 2 7 7 H 1.07997 * 119.99939 * 359.97438 * 6 5 4 8 8 C 1.39733 * 120.00247 * 180.02562 * 6 5 4 9 9 N 1.30987 * 119.99925 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00272 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47324 * 59.99290 * 10 8 6 12 12 H 1.48502 * 109.47277 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46825 * 299.99366 * 10 8 6 14 14 N 1.34841 * 107.95674 * 179.97438 * 5 4 2 15 15 N 1.28669 * 109.63840 * 359.97438 * 14 5 4 16 16 N 1.35014 * 126.77513 * 239.71089 * 4 2 1 17 17 C 1.46500 * 126.49295 * 359.97438 * 16 4 2 18 18 C 1.53000 * 109.47101 * 89.99510 * 17 16 4 19 19 O 1.42908 * 109.47003 * 179.97438 * 18 17 16 20 20 C 1.42902 * 113.99734 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47034 * 180.02562 * 20 19 18 22 22 O 1.42906 * 109.47234 * 64.99889 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 0.97001 * 120.00294 * 180.02562 * 9 8 6 31 31 H 1.08995 * 109.47402 * 209.99801 * 17 16 4 32 32 H 1.09006 * 109.47032 * 329.99918 * 17 16 4 33 33 H 1.08994 * 109.47745 * 300.00488 * 18 17 16 34 34 H 1.09000 * 109.46981 * 60.00700 * 18 17 16 35 35 H 1.09007 * 109.47083 * 300.00128 * 20 19 18 36 36 H 1.08994 * 109.47100 * 60.00360 * 20 19 18 37 37 H 1.08999 * 109.47340 * 184.99654 * 21 20 19 38 38 H 1.09003 * 109.46943 * 305.00114 * 21 20 19 39 39 H 0.96698 * 114.00461 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7853 -0.3601 -2.5528 6 6 1.0087 0.7383 -2.9914 7 1 0.5443 1.3937 -2.2697 8 6 0.8418 0.9743 -4.3585 9 7 1.4047 0.1790 -5.2340 10 14 -0.1829 2.4249 -4.9377 11 1 0.4106 3.6861 -4.4256 12 1 -0.2036 2.4550 -6.4222 13 1 -1.5700 2.2869 -4.4255 14 7 2.4161 -1.2515 -3.3438 15 7 3.0290 -2.1177 -2.6161 16 7 2.8161 -1.8093 -1.2659 17 6 3.3430 -2.5413 -0.1114 18 6 2.3521 -3.6337 0.2954 19 8 2.8664 -4.3482 1.4211 20 6 2.0129 -5.3971 1.8832 21 6 2.6599 -6.0890 3.0847 22 8 2.7500 -5.1676 4.1734 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.2891 0.3431 -6.1830 31 1 4.2978 -2.9964 -0.3747 32 1 3.4863 -1.8524 0.7211 33 1 1.3974 -3.1787 0.5587 34 1 2.2089 -4.3227 -0.5371 35 1 1.0510 -4.9787 2.1798 36 1 1.8628 -6.1222 1.0834 37 1 2.0528 -6.9441 3.3818 38 1 3.6591 -6.4295 2.8132 39 1 3.1516 -5.5390 4.9708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:59 Heat of formation + Delta-G solvation = -17.359620 kcal Electronic energy + Delta-G solvation = -20941.387056 eV Core-core repulsion = 17693.078785 eV Total energy + Delta-G solvation = -3248.308271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09190 -38.31436 -36.59871 -34.84616 -33.98546 -32.65391 -30.09623 -28.60624 -27.97663 -26.42129 -25.13462 -23.05857 -22.64558 -21.63639 -20.19368 -18.50419 -17.89487 -17.30224 -16.73383 -15.78626 -15.27139 -15.09979 -14.83566 -14.27651 -13.87588 -13.78897 -13.49978 -13.14911 -12.82505 -12.62850 -12.25376 -11.65611 -11.47076 -11.43675 -11.34666 -11.20439 -11.07313 -11.05867 -10.72645 -10.49989 -10.30820 -10.22536 -9.90421 -9.63213 -9.61274 -9.25918 -8.78085 -8.44858 -7.36043 -6.33677 -4.12773 2.77234 3.16180 3.21866 3.22508 3.27451 3.99117 4.07479 4.16582 4.34135 4.84376 4.96757 5.05521 5.10012 5.34822 5.37987 5.50277 5.54048 5.54366 5.58343 5.62656 5.82793 5.93020 5.97274 6.23575 6.26695 6.46992 6.55820 6.61038 6.80038 7.00061 7.10111 7.15910 7.17272 7.39401 7.43486 7.59755 8.16197 8.46002 8.86261 9.12135 10.22896 10.63128 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.004365 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.295749 B = 6413.178983 C = 6876.752335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.010 3.990 3 C -0.143 4.143 4 C -0.105 4.105 5 C 0.158 3.842 6 C -0.450 4.450 7 H 0.086 0.914 8 C 0.073 3.927 9 N -0.777 5.777 10 Si 0.903 3.097 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.268 1.268 14 N -0.226 5.226 15 N -0.135 5.135 16 N -0.377 5.377 17 C 0.144 3.856 18 C 0.051 3.949 19 O -0.380 6.380 20 C 0.062 3.938 21 C 0.079 3.921 22 O -0.565 6.565 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.272 0.728 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -7.112 14.573 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.011 4.011 3 C -0.201 4.201 4 C -0.236 4.236 5 C 0.028 3.972 6 C -0.485 4.485 7 H 0.104 0.896 8 C -0.146 4.146 9 N -0.404 5.404 10 Si 0.728 3.272 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.193 1.193 14 N -0.098 5.098 15 N -0.110 5.110 16 N -0.174 5.174 17 C 0.020 3.980 18 C -0.027 4.027 19 O -0.299 6.299 20 C -0.015 4.015 21 C 0.001 3.999 22 O -0.370 6.370 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.458 -7.724 12.954 15.089 hybrid contribution -0.899 0.646 0.733 1.328 sum -0.440 -7.079 13.687 15.416 Atomic orbital electron populations 1.21844 0.95039 1.01178 1.01970 1.19068 0.95151 0.94763 0.92104 1.21851 1.00388 0.95946 1.01935 1.21450 1.08752 0.96195 0.97230 1.18902 0.97369 0.95579 0.85362 1.18577 1.28956 1.09323 0.91690 0.89578 1.25789 0.95165 0.96707 0.96949 1.70008 1.34631 1.33530 1.02197 0.86475 0.80740 0.82094 0.77875 1.19302 1.20684 1.19328 1.75081 1.08595 1.02291 1.23847 1.81530 1.24369 1.22646 0.82468 1.49344 1.39502 1.21867 1.06676 1.20977 0.96723 0.93457 0.86883 1.22872 0.97388 0.94302 0.88186 1.87839 1.45735 1.48122 1.48169 1.22521 0.94039 0.90230 0.94661 1.22197 1.00139 0.91007 0.86546 1.86592 1.85132 1.40982 1.24335 0.93821 0.90429 0.93731 0.92878 0.93752 0.93612 0.90451 0.91777 0.89048 0.89357 0.92724 0.92560 0.92544 0.91819 0.92237 0.92700 0.77635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.04 37.16 0.34 -2.18 16 2 C 0.01 0.19 3.03 -91.77 -0.28 -0.09 16 3 C -0.14 -2.54 9.04 37.16 0.34 -2.21 16 4 C -0.11 -2.44 5.80 -80.91 -0.47 -2.91 16 5 C 0.16 4.30 6.60 -85.02 -0.56 3.74 16 6 C -0.45 -11.94 7.69 -37.79 -0.29 -12.23 16 7 H 0.09 2.10 4.66 -52.49 -0.24 1.85 16 8 C 0.07 1.92 5.49 -17.35 -0.10 1.83 16 9 N -0.78 -22.02 11.92 55.54 0.66 -21.36 16 10 Si 0.90 19.47 29.56 -169.99 -5.02 14.45 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 14 N -0.23 -6.60 10.55 32.05 0.34 -6.27 16 15 N -0.13 -3.56 13.74 60.35 0.83 -2.73 16 16 N -0.38 -8.50 3.63 -56.17 -0.20 -8.70 16 17 C 0.14 2.52 6.54 -4.04 -0.03 2.50 16 18 C 0.05 0.81 6.26 37.16 0.23 1.04 16 19 O -0.38 -5.59 10.31 -40.08 -0.41 -6.00 16 20 C 0.06 0.71 6.32 37.16 0.23 0.95 16 21 C 0.08 0.71 7.43 37.16 0.28 0.98 16 22 O -0.57 -5.86 13.62 -40.08 -0.55 -6.41 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 1.51 5.74 -51.93 -0.30 1.21 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.91 6.88 -51.93 -0.36 0.56 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.51 5.74 -51.93 -0.30 1.21 16 30 H 0.27 7.11 8.30 -40.82 -0.34 6.77 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.42 7.16 -51.93 -0.37 1.05 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.38 1.94 9.12 45.56 0.42 2.36 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -33.48 325.06 -4.70 -38.18 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.94 Total: 2.53 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.30 Total: -8.58 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 1.63 Total: -39.06 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.96 Total: -12.41 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.48 -4.70 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.820 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds