Wall clock time and date at job start Mon Mar 30 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.39017 * 126.76869 * 60.02630 * 4 2 1 6 6 C 1.41490 * 126.02348 * 359.97438 * 5 4 2 7 7 H 1.07997 * 119.99939 * 359.97438 * 6 5 4 8 8 C 1.39733 * 120.00247 * 180.02562 * 6 5 4 9 9 N 1.30987 * 119.99925 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00272 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47324 * 59.99290 * 10 8 6 12 12 H 1.48502 * 109.47277 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46825 * 299.99366 * 10 8 6 14 14 N 1.34841 * 107.95674 * 179.97438 * 5 4 2 15 15 N 1.28669 * 109.63840 * 359.97438 * 14 5 4 16 16 N 1.35014 * 126.77513 * 239.71089 * 4 2 1 17 17 C 1.46500 * 126.49295 * 359.97438 * 16 4 2 18 18 C 1.53000 * 109.47101 * 89.99510 * 17 16 4 19 19 O 1.42908 * 109.47003 * 179.97438 * 18 17 16 20 20 C 1.42902 * 113.99734 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47034 * 180.02562 * 20 19 18 22 22 O 1.42906 * 109.47234 * 64.99889 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 0.97001 * 120.00294 * 180.02562 * 9 8 6 31 31 H 1.08995 * 109.47402 * 209.99801 * 17 16 4 32 32 H 1.09006 * 109.47032 * 329.99918 * 17 16 4 33 33 H 1.08994 * 109.47745 * 300.00488 * 18 17 16 34 34 H 1.09000 * 109.46981 * 60.00700 * 18 17 16 35 35 H 1.09007 * 109.47083 * 300.00128 * 20 19 18 36 36 H 1.08994 * 109.47100 * 60.00360 * 20 19 18 37 37 H 1.08999 * 109.47340 * 184.99654 * 21 20 19 38 38 H 1.09003 * 109.46943 * 305.00114 * 21 20 19 39 39 H 0.96698 * 114.00461 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7853 -0.3601 -2.5528 6 6 1.0087 0.7383 -2.9914 7 1 0.5443 1.3937 -2.2697 8 6 0.8418 0.9743 -4.3585 9 7 1.4047 0.1790 -5.2340 10 14 -0.1829 2.4249 -4.9377 11 1 0.4106 3.6861 -4.4256 12 1 -0.2036 2.4550 -6.4222 13 1 -1.5700 2.2869 -4.4255 14 7 2.4161 -1.2515 -3.3438 15 7 3.0290 -2.1177 -2.6161 16 7 2.8161 -1.8093 -1.2659 17 6 3.3430 -2.5413 -0.1114 18 6 2.3521 -3.6337 0.2954 19 8 2.8664 -4.3482 1.4211 20 6 2.0129 -5.3971 1.8832 21 6 2.6599 -6.0890 3.0847 22 8 2.7500 -5.1676 4.1734 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.2891 0.3431 -6.1830 31 1 4.2978 -2.9964 -0.3747 32 1 3.4863 -1.8524 0.7211 33 1 1.3974 -3.1787 0.5587 34 1 2.2089 -4.3227 -0.5371 35 1 1.0510 -4.9787 2.1798 36 1 1.8628 -6.1222 1.0834 37 1 2.0528 -6.9441 3.3818 38 1 3.6591 -6.4295 2.8132 39 1 3.1516 -5.5390 4.9708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:59 Heat of formation + Delta-G solvation = -43.510565 kcal Electronic energy + Delta-G solvation = -20942.521046 eV Core-core repulsion = 17693.078785 eV Total energy + Delta-G solvation = -3249.442261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.98251 -39.36572 -37.43761 -36.45019 -35.73750 -34.40432 -31.22104 -30.50002 -29.33864 -27.82861 -27.02503 -24.58600 -23.46969 -23.30427 -22.05322 -20.19763 -19.11360 -18.61090 -17.95236 -16.99217 -16.75868 -16.63488 -16.40489 -15.39489 -15.35992 -15.15034 -15.07976 -14.39358 -14.30663 -13.93141 -13.71632 -13.23838 -13.00174 -12.92979 -12.75416 -12.70199 -12.55216 -12.38281 -12.09201 -11.95736 -11.93673 -11.53850 -11.45526 -11.13184 -10.98100 -10.75380 -10.65703 -10.32173 -9.32279 -8.26168 -6.13273 0.95453 1.46225 1.47993 1.57700 1.72309 2.35997 2.36384 2.78822 3.38954 3.57986 3.66683 3.85164 3.98438 4.11815 4.16039 4.18275 4.23827 4.41326 4.46357 4.51757 4.54427 4.62884 4.76260 4.81257 4.86750 4.97476 5.01911 5.15938 5.24199 5.25785 5.51950 5.54056 5.57344 5.80294 6.00819 6.39127 6.48805 6.93419 6.93934 7.14416 8.28799 8.73283 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.004365 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.295749 B = 6413.178983 C = 6876.752335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.006 3.994 3 C -0.139 4.139 4 C -0.073 4.073 5 C 0.116 3.884 6 C -0.469 4.469 7 H 0.103 0.897 8 C 0.019 3.981 9 N -0.830 5.830 10 Si 0.979 3.021 11 H -0.258 1.258 12 H -0.283 1.283 13 H -0.257 1.257 14 N -0.280 5.280 15 N -0.175 5.175 16 N -0.364 5.364 17 C 0.134 3.866 18 C 0.066 3.934 19 O -0.389 6.389 20 C 0.049 3.951 21 C 0.080 3.920 22 O -0.593 6.593 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.271 0.729 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 -6.633 17.706 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 C -0.197 4.197 4 C -0.208 4.208 5 C -0.016 4.016 6 C -0.505 4.505 7 H 0.120 0.880 8 C -0.194 4.194 9 N -0.458 5.458 10 Si 0.801 3.199 11 H -0.182 1.182 12 H -0.209 1.209 13 H -0.181 1.181 14 N -0.150 5.150 15 N -0.149 5.149 16 N -0.158 5.158 17 C 0.012 3.988 18 C -0.012 4.012 19 O -0.308 6.308 20 C -0.028 4.028 21 C 0.003 3.997 22 O -0.401 6.401 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.344 -7.312 16.128 17.711 hybrid contribution -0.573 0.377 0.055 0.688 sum -0.917 -6.935 16.183 17.630 Atomic orbital electron populations 1.21796 0.93714 1.01214 1.02822 1.19366 0.96189 0.95304 0.90622 1.21807 1.00078 0.94970 1.02810 1.22294 1.05667 0.94985 0.97873 1.19481 0.98738 0.96467 0.86939 1.18985 1.29356 1.09697 0.92506 0.87975 1.26762 0.96194 0.99508 0.96958 1.70188 1.37193 1.36103 1.02359 0.85306 0.79209 0.78384 0.77022 1.18181 1.20853 1.18135 1.75037 1.10519 1.03766 1.25645 1.81416 1.26175 1.23353 0.83954 1.49723 1.37658 1.21405 1.07063 1.21366 0.97474 0.94344 0.85645 1.22516 0.96452 0.93680 0.88581 1.87822 1.46662 1.49033 1.47306 1.22885 0.93889 0.89757 0.96240 1.22272 1.00876 0.91159 0.85406 1.86520 1.85638 1.42342 1.25647 0.94258 0.92587 0.89814 0.90235 0.89780 0.94120 0.92629 0.91980 0.88209 0.87055 0.92878 0.93627 0.92722 0.90381 0.89066 0.92205 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.04 71.98 0.65 -3.81 16 2 C 0.01 0.21 3.03 -11.54 -0.03 0.18 16 3 C -0.14 -4.51 9.04 71.98 0.65 -3.86 16 4 C -0.07 -3.36 5.80 42.26 0.24 -3.11 16 5 C 0.12 6.49 6.60 39.67 0.26 6.75 16 6 C -0.47 -25.38 7.69 23.43 0.18 -25.20 16 7 H 0.10 4.97 4.66 -2.91 -0.01 4.96 16 8 C 0.02 1.04 5.49 85.18 0.47 1.51 16 9 N -0.83 -49.25 11.92 21.79 0.26 -48.99 16 10 Si 0.98 40.63 29.56 68.60 2.03 42.65 16 11 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 13 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 14 N -0.28 -17.12 10.55 -52.52 -0.55 -17.68 16 15 N -0.17 -9.56 13.74 37.02 0.51 -9.05 16 16 N -0.36 -16.32 3.63 -331.64 -1.20 -17.53 16 17 C 0.13 4.49 6.54 86.38 0.56 5.06 16 18 C 0.07 2.00 6.26 71.98 0.45 2.46 16 19 O -0.39 -10.66 10.31 -144.34 -1.49 -12.15 16 20 C 0.05 1.00 6.32 71.98 0.45 1.45 16 21 C 0.08 1.22 7.43 71.98 0.53 1.75 16 22 O -0.59 -10.75 13.62 -144.34 -1.97 -12.71 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 2.08 5.74 -2.39 -0.01 2.06 16 25 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.08 2.39 6.88 -2.39 -0.02 2.38 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 2.07 5.74 -2.39 -0.01 2.05 16 30 H 0.27 14.92 8.30 -92.71 -0.77 14.15 16 31 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.11 3.25 7.16 -2.38 -0.02 3.23 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.40 3.06 9.12 -74.06 -0.68 2.39 16 Total: -1.00 -76.16 325.06 2.40 -73.77 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.39 Total: 18.52 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 4.43 Total: -16.83 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -0.99 Total: -93.25 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -3.45 Total: -24.86 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -76.16 2.40 -73.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.257 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds