Wall clock time and date at job start Mon Mar 30 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99793 * 2 1 4 4 C 1.53002 * 109.46846 * 179.97438 * 3 2 1 5 5 C 1.50710 * 109.46905 * 179.97438 * 4 3 2 6 6 C 1.39010 * 126.77118 * 269.97521 * 5 4 3 7 7 C 1.41488 * 126.02253 * 0.03799 * 6 5 4 8 8 H 1.08000 * 120.00479 * 359.72274 * 7 6 5 9 9 C 1.39745 * 120.00123 * 179.97438 * 7 6 5 10 10 N 1.30983 * 119.99866 * 359.72068 * 9 7 6 11 11 Si 1.86798 * 119.99961 * 179.72636 * 9 7 6 12 12 H 1.48493 * 109.47326 * 90.00156 * 11 9 7 13 13 H 1.48506 * 109.46545 * 209.99906 * 11 9 7 14 14 H 1.48498 * 109.47210 * 329.99617 * 11 9 7 15 15 N 1.34844 * 107.95770 * 180.29749 * 6 5 4 16 16 N 1.28674 * 109.63153 * 359.55606 * 15 6 5 17 17 N 1.35016 * 126.76933 * 90.01671 * 5 4 3 18 18 C 1.46499 * 126.49317 * 359.96914 * 17 5 4 19 19 H 1.09000 * 109.47010 * 359.97438 * 18 17 5 20 20 C 1.53006 * 109.47001 * 239.99612 * 18 17 5 21 21 C 1.53003 * 109.47303 * 119.99435 * 18 17 5 22 22 H 1.08996 * 109.47049 * 305.00316 * 21 18 17 23 23 C 1.53003 * 109.46953 * 184.99716 * 21 18 17 24 24 O 1.42901 * 109.46731 * 65.00122 * 21 18 17 25 25 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47054 * 300.00155 * 1 2 3 27 27 H 1.08999 * 109.47170 * 60.00252 * 1 2 3 28 28 H 1.08995 * 109.47228 * 60.00059 * 3 2 1 29 29 H 1.08999 * 109.46750 * 299.99635 * 3 2 1 30 30 H 1.08995 * 109.47078 * 60.00066 * 4 3 2 31 31 H 1.08999 * 109.47229 * 299.99441 * 4 3 2 32 32 H 0.97000 * 120.00385 * 179.97438 * 10 9 7 33 33 H 1.09004 * 109.46774 * 59.99866 * 20 18 17 34 34 H 1.08999 * 109.46983 * 179.97438 * 20 18 17 35 35 H 1.08994 * 109.47036 * 300.00202 * 20 18 17 36 36 H 1.08991 * 109.47163 * 60.00330 * 23 21 18 37 37 H 1.09003 * 109.46580 * 180.02562 * 23 21 18 38 38 H 1.08994 * 109.47248 * 299.99982 * 23 21 18 39 39 H 0.96701 * 114.00685 * 60.00137 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5615 0.0000 6 6 4.4877 3.3208 -1.1139 7 6 4.3178 2.9377 -2.4652 8 1 3.8932 1.9738 -2.7040 9 6 4.7043 3.8043 -3.4911 10 7 5.2188 4.9736 -3.2016 11 14 4.4870 3.2953 -5.2752 12 1 3.1486 3.7255 -5.7533 13 1 5.5387 3.9370 -6.1045 14 1 4.6014 1.8189 -5.3862 15 7 5.0125 4.4845 -0.6795 16 7 5.0142 4.5045 0.6070 17 7 4.4770 3.3004 1.0812 18 6 4.3046 2.9159 2.4843 19 1 3.8609 1.9217 2.5367 20 6 3.3848 3.9218 3.1794 21 6 5.6668 2.9043 3.1810 22 1 6.3496 2.2550 2.6331 23 6 5.5041 2.3835 4.6104 24 8 6.1957 4.2314 3.2149 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 3.8574 0.6436 -0.8891 31 1 3.8567 0.6440 0.8909 32 1 5.4874 5.5750 -3.9136 33 1 2.4143 3.9299 2.6830 34 1 3.2562 3.6354 4.2233 35 1 3.8281 4.9161 3.1269 36 1 5.1007 1.3714 4.5846 37 1 6.4745 2.3758 5.1068 38 1 4.8214 3.0330 5.1582 39 1 5.6388 4.8650 3.6877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:19 Heat of formation + Delta-G solvation = -16.922751 kcal Electronic energy + Delta-G solvation = -21521.308168 eV Core-core repulsion = 18273.018841 eV Total energy + Delta-G solvation = -3248.289327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.13759 -37.88650 -37.54699 -33.95178 -33.18659 -32.25312 -30.42754 -28.71539 -28.45646 -26.24056 -24.93311 -24.40775 -22.61046 -21.48332 -19.74012 -18.91433 -17.32542 -16.20860 -15.98394 -15.79795 -15.45056 -15.11274 -14.85499 -14.74761 -14.38128 -13.52297 -13.26183 -13.02186 -12.53122 -12.40892 -12.34870 -12.10860 -11.69997 -11.62537 -11.58792 -11.17284 -11.09089 -10.95193 -10.81201 -10.64472 -10.55714 -10.29667 -9.90082 -9.63883 -9.37288 -9.22572 -8.81971 -8.35134 -7.36263 -6.34988 -4.14151 2.81658 3.18275 3.22378 3.25864 3.54887 4.10880 4.15642 4.37633 4.50431 4.84893 4.97802 5.12323 5.20830 5.32804 5.37987 5.44221 5.54111 5.54366 5.56922 5.69543 5.71849 5.81126 5.81670 5.88817 6.00201 6.04734 6.16913 6.32009 6.34534 6.60099 6.95910 7.18681 7.43745 7.46111 7.55169 7.89675 8.21196 8.45819 8.85378 9.10812 10.27598 10.61436 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.007315 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.701197 B = 3826.914060 C = 5444.317996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.067 3.933 4 C -0.006 4.006 5 C -0.133 4.133 6 C 0.161 3.839 7 C -0.450 4.450 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.773 5.773 11 Si 0.905 3.095 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.264 1.264 15 N -0.234 5.234 16 N -0.098 5.098 17 N -0.369 5.369 18 C 0.132 3.868 19 H 0.094 0.906 20 C -0.164 4.164 21 C 0.098 3.902 22 H 0.099 0.901 23 C -0.184 4.184 24 O -0.540 6.540 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.272 0.728 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 -6.644 11.115 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.010 4.010 4 C -0.046 4.046 5 C -0.263 4.263 6 C 0.032 3.968 7 C -0.485 4.485 8 H 0.099 0.901 9 C -0.146 4.146 10 N -0.399 5.399 11 Si 0.730 3.270 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.189 1.189 15 N -0.107 5.107 16 N -0.074 5.074 17 N -0.167 5.167 18 C 0.026 3.974 19 H 0.112 0.888 20 C -0.222 4.222 21 C 0.037 3.963 22 H 0.116 0.884 23 C -0.242 4.242 24 O -0.344 6.344 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.841 -5.498 11.069 13.273 hybrid contribution -1.323 -0.798 -0.696 1.695 sum -6.164 -6.296 10.373 13.610 Atomic orbital electron populations 1.22661 0.81862 1.02010 0.99787 1.87828 1.19061 1.29248 1.95453 1.22698 0.94702 0.83322 1.00266 1.19348 0.91108 0.91747 1.02413 1.21012 1.19533 0.98022 0.87684 1.18956 0.96461 0.88245 0.93181 1.18560 1.39605 1.02714 0.87666 0.90122 1.25787 0.93664 0.94462 1.00675 1.70021 1.29658 1.06464 1.33787 0.86377 0.78418 0.79659 0.82528 1.19861 1.20504 1.18853 1.75159 1.16241 1.19426 0.99884 1.81562 1.18264 1.00967 1.06626 1.49392 1.48362 1.15066 1.03850 1.21668 0.96760 0.99099 0.79856 0.88789 1.22149 0.99983 1.00280 0.99826 1.22173 0.94048 0.85543 0.94493 0.88357 1.22552 1.02750 1.01898 0.97007 1.86716 1.49949 1.18268 1.79507 0.90158 0.94653 0.94135 0.94478 0.92284 0.89666 0.92709 0.91754 0.91907 0.91326 0.90992 0.91546 0.91513 0.91943 0.78474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.40 -6.41 10.70 -35.23 -0.38 -6.79 16 3 C 0.07 1.17 5.92 37.16 0.22 1.39 16 4 C -0.01 -0.12 5.48 -27.88 -0.15 -0.27 16 5 C -0.13 -3.08 6.37 -80.90 -0.52 -3.60 16 6 C 0.16 4.44 6.72 -85.02 -0.57 3.87 16 7 C -0.45 -12.32 9.11 -37.78 -0.34 -12.66 16 8 H 0.08 2.07 7.30 -52.49 -0.38 1.68 16 9 C 0.07 1.97 5.49 -17.35 -0.10 1.88 16 10 N -0.77 -22.12 11.92 55.54 0.66 -21.45 16 11 Si 0.90 19.81 29.56 -169.99 -5.02 14.79 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 15 N -0.23 -6.84 10.56 32.05 0.34 -6.50 16 16 N -0.10 -2.53 12.87 60.35 0.78 -1.75 16 17 N -0.37 -7.97 3.29 -49.73 -0.16 -8.14 16 18 C 0.13 2.05 2.97 -67.93 -0.20 1.85 16 19 H 0.09 1.33 6.80 -51.93 -0.35 0.97 16 20 C -0.16 -2.16 8.79 37.16 0.33 -1.83 16 21 C 0.10 1.42 3.57 -26.73 -0.10 1.32 16 22 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 23 C -0.18 -1.85 9.29 37.16 0.35 -1.50 16 24 O -0.54 -8.88 12.43 -35.23 -0.44 -9.31 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.69 7.56 -51.93 -0.39 1.29 16 31 H 0.05 0.93 7.20 -51.93 -0.37 0.55 16 32 H 0.27 7.15 8.30 -40.82 -0.34 6.81 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.66 6.57 -51.93 -0.34 0.31 16 35 H 0.07 1.01 6.72 -51.93 -0.35 0.66 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.37 4.80 7.19 45.56 0.33 5.13 16 LS Contribution 324.84 15.07 4.90 4.90 Total: -1.00 -33.30 324.84 -4.45 -37.74 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.14 Total: 4.55 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.03 Total: -8.04 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 1.61 Total: -37.84 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.82 Total: -16.10 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.30 -4.45 -37.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.821 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds