Wall clock time and date at job start Mon Mar 30 2020 05:48:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42901 * 113.99793 * 2 1
4 4 C 1.53002 * 109.46846 * 179.97438 * 3 2 1
5 5 C 1.50710 * 109.46905 * 179.97438 * 4 3 2
6 6 C 1.39010 * 126.77118 * 269.97521 * 5 4 3
7 7 C 1.41488 * 126.02253 * 0.03799 * 6 5 4
8 8 H 1.08000 * 120.00479 * 359.72274 * 7 6 5
9 9 C 1.39745 * 120.00123 * 179.97438 * 7 6 5
10 10 N 1.30983 * 119.99866 * 359.72068 * 9 7 6
11 11 Si 1.86798 * 119.99961 * 179.72636 * 9 7 6
12 12 H 1.48493 * 109.47326 * 90.00156 * 11 9 7
13 13 H 1.48506 * 109.46545 * 209.99906 * 11 9 7
14 14 H 1.48498 * 109.47210 * 329.99617 * 11 9 7
15 15 N 1.34844 * 107.95770 * 180.29749 * 6 5 4
16 16 N 1.28674 * 109.63153 * 359.55606 * 15 6 5
17 17 N 1.35016 * 126.76933 * 90.01671 * 5 4 3
18 18 C 1.46499 * 126.49317 * 359.96914 * 17 5 4
19 19 H 1.09000 * 109.47010 * 359.97438 * 18 17 5
20 20 C 1.53006 * 109.47001 * 239.99612 * 18 17 5
21 21 C 1.53003 * 109.47303 * 119.99435 * 18 17 5
22 22 H 1.08996 * 109.47049 * 305.00316 * 21 18 17
23 23 C 1.53003 * 109.46953 * 184.99716 * 21 18 17
24 24 O 1.42901 * 109.46731 * 65.00122 * 21 18 17
25 25 H 1.09000 * 109.46871 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47054 * 300.00155 * 1 2 3
27 27 H 1.08999 * 109.47170 * 60.00252 * 1 2 3
28 28 H 1.08995 * 109.47228 * 60.00059 * 3 2 1
29 29 H 1.08999 * 109.46750 * 299.99635 * 3 2 1
30 30 H 1.08995 * 109.47078 * 60.00066 * 4 3 2
31 31 H 1.08999 * 109.47229 * 299.99441 * 4 3 2
32 32 H 0.97000 * 120.00385 * 179.97438 * 10 9 7
33 33 H 1.09004 * 109.46774 * 59.99866 * 20 18 17
34 34 H 1.08999 * 109.46983 * 179.97438 * 20 18 17
35 35 H 1.08994 * 109.47036 * 300.00202 * 20 18 17
36 36 H 1.08991 * 109.47163 * 60.00330 * 23 21 18
37 37 H 1.09003 * 109.46580 * 180.02562 * 23 21 18
38 38 H 1.08994 * 109.47248 * 299.99982 * 23 21 18
39 39 H 0.96701 * 114.00685 * 60.00137 * 24 21 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 6 4.1484 2.5615 0.0000
6 6 4.4877 3.3208 -1.1139
7 6 4.3178 2.9377 -2.4652
8 1 3.8932 1.9738 -2.7040
9 6 4.7043 3.8043 -3.4911
10 7 5.2188 4.9736 -3.2016
11 14 4.4870 3.2953 -5.2752
12 1 3.1486 3.7255 -5.7533
13 1 5.5387 3.9370 -6.1045
14 1 4.6014 1.8189 -5.3862
15 7 5.0125 4.4845 -0.6795
16 7 5.0142 4.5045 0.6070
17 7 4.4770 3.3004 1.0812
18 6 4.3046 2.9159 2.4843
19 1 3.8609 1.9217 2.5367
20 6 3.3848 3.9218 3.1794
21 6 5.6668 2.9043 3.1810
22 1 6.3496 2.2550 2.6331
23 6 5.5041 2.3835 4.6104
24 8 6.1957 4.2314 3.2149
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 1.6885 1.8464 0.8899
29 1 1.6885 1.8463 -0.8900
30 1 3.8574 0.6436 -0.8891
31 1 3.8567 0.6440 0.8909
32 1 5.4874 5.5750 -3.9136
33 1 2.4143 3.9299 2.6830
34 1 3.2562 3.6354 4.2233
35 1 3.8281 4.9161 3.1269
36 1 5.1007 1.3714 4.5846
37 1 6.4745 2.3758 5.1068
38 1 4.8214 3.0330 5.1582
39 1 5.6388 4.8650 3.6877
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000958545666.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:48:19
Heat of formation + Delta-G solvation = -16.922751 kcal
Electronic energy + Delta-G solvation = -21521.308168 eV
Core-core repulsion = 18273.018841 eV
Total energy + Delta-G solvation = -3248.289327 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.13759 -37.88650 -37.54699 -33.95178 -33.18659 -32.25312 -30.42754 -28.71539
-28.45646 -26.24056 -24.93311 -24.40775 -22.61046 -21.48332 -19.74012 -18.91433
-17.32542 -16.20860 -15.98394 -15.79795 -15.45056 -15.11274 -14.85499 -14.74761
-14.38128 -13.52297 -13.26183 -13.02186 -12.53122 -12.40892 -12.34870 -12.10860
-11.69997 -11.62537 -11.58792 -11.17284 -11.09089 -10.95193 -10.81201 -10.64472
-10.55714 -10.29667 -9.90082 -9.63883 -9.37288 -9.22572 -8.81971 -8.35134
-7.36263 -6.34988 -4.14151 2.81658 3.18275 3.22378 3.25864 3.54887
4.10880 4.15642 4.37633 4.50431 4.84893 4.97802 5.12323 5.20830
5.32804 5.37987 5.44221 5.54111 5.54366 5.56922 5.69543 5.71849
5.81126 5.81670 5.88817 6.00201 6.04734 6.16913 6.32009 6.34534
6.60099 6.95910 7.18681 7.43745 7.46111 7.55169 7.89675 8.21196
8.45819 8.85378 9.10812 10.27598 10.61436
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.014034 B = 0.007315 C = 0.005142
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1994.701197 B = 3826.914060 C = 5444.317996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.397 6.397
3 C 0.067 3.933
4 C -0.006 4.006
5 C -0.133 4.133
6 C 0.161 3.839
7 C -0.450 4.450
8 H 0.081 0.919
9 C 0.073 3.927
10 N -0.773 5.773
11 Si 0.905 3.095
12 H -0.273 1.273
13 H -0.280 1.280
14 H -0.264 1.264
15 N -0.234 5.234
16 N -0.098 5.098
17 N -0.369 5.369
18 C 0.132 3.868
19 H 0.094 0.906
20 C -0.164 4.164
21 C 0.098 3.902
22 H 0.099 0.901
23 C -0.184 4.184
24 O -0.540 6.540
25 H 0.080 0.920
26 H 0.035 0.965
27 H 0.040 0.960
28 H 0.037 0.963
29 H 0.059 0.941
30 H 0.085 0.915
31 H 0.054 0.946
32 H 0.272 0.728
33 H 0.062 0.938
34 H 0.068 0.932
35 H 0.071 0.929
36 H 0.066 0.934
37 H 0.066 0.934
38 H 0.062 0.938
39 H 0.368 0.632
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.151 -6.644 11.115 14.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.316 6.316
3 C -0.010 4.010
4 C -0.046 4.046
5 C -0.263 4.263
6 C 0.032 3.968
7 C -0.485 4.485
8 H 0.099 0.901
9 C -0.146 4.146
10 N -0.399 5.399
11 Si 0.730 3.270
12 H -0.199 1.199
13 H -0.205 1.205
14 H -0.189 1.189
15 N -0.107 5.107
16 N -0.074 5.074
17 N -0.167 5.167
18 C 0.026 3.974
19 H 0.112 0.888
20 C -0.222 4.222
21 C 0.037 3.963
22 H 0.116 0.884
23 C -0.242 4.242
24 O -0.344 6.344
25 H 0.098 0.902
26 H 0.053 0.947
27 H 0.059 0.941
28 H 0.055 0.945
29 H 0.077 0.923
30 H 0.103 0.897
31 H 0.073 0.927
32 H 0.082 0.918
33 H 0.081 0.919
34 H 0.087 0.913
35 H 0.090 0.910
36 H 0.085 0.915
37 H 0.085 0.915
38 H 0.081 0.919
39 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges -4.841 -5.498 11.069 13.273
hybrid contribution -1.323 -0.798 -0.696 1.695
sum -6.164 -6.296 10.373 13.610
Atomic orbital electron populations
1.22661 0.81862 1.02010 0.99787 1.87828 1.19061 1.29248 1.95453
1.22698 0.94702 0.83322 1.00266 1.19348 0.91108 0.91747 1.02413
1.21012 1.19533 0.98022 0.87684 1.18956 0.96461 0.88245 0.93181
1.18560 1.39605 1.02714 0.87666 0.90122 1.25787 0.93664 0.94462
1.00675 1.70021 1.29658 1.06464 1.33787 0.86377 0.78418 0.79659
0.82528 1.19861 1.20504 1.18853 1.75159 1.16241 1.19426 0.99884
1.81562 1.18264 1.00967 1.06626 1.49392 1.48362 1.15066 1.03850
1.21668 0.96760 0.99099 0.79856 0.88789 1.22149 0.99983 1.00280
0.99826 1.22173 0.94048 0.85543 0.94493 0.88357 1.22552 1.02750
1.01898 0.97007 1.86716 1.49949 1.18268 1.79507 0.90158 0.94653
0.94135 0.94478 0.92284 0.89666 0.92709 0.91754 0.91907 0.91326
0.90992 0.91546 0.91513 0.91943 0.78474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.41 11.01 101.05 1.11 1.52 16
2 O -0.40 -6.41 10.70 -35.23 -0.38 -6.79 16
3 C 0.07 1.17 5.92 37.16 0.22 1.39 16
4 C -0.01 -0.12 5.48 -27.88 -0.15 -0.27 16
5 C -0.13 -3.08 6.37 -80.90 -0.52 -3.60 16
6 C 0.16 4.44 6.72 -85.02 -0.57 3.87 16
7 C -0.45 -12.32 9.11 -37.78 -0.34 -12.66 16
8 H 0.08 2.07 7.30 -52.49 -0.38 1.68 16
9 C 0.07 1.97 5.49 -17.35 -0.10 1.88 16
10 N -0.77 -22.12 11.92 55.54 0.66 -21.45 16
11 Si 0.90 19.81 29.56 -169.99 -5.02 14.79 16
12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
14 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16
15 N -0.23 -6.84 10.56 32.05 0.34 -6.50 16
16 N -0.10 -2.53 12.87 60.35 0.78 -1.75 16
17 N -0.37 -7.97 3.29 -49.73 -0.16 -8.14 16
18 C 0.13 2.05 2.97 -67.93 -0.20 1.85 16
19 H 0.09 1.33 6.80 -51.93 -0.35 0.97 16
20 C -0.16 -2.16 8.79 37.16 0.33 -1.83 16
21 C 0.10 1.42 3.57 -26.73 -0.10 1.32 16
22 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16
23 C -0.18 -1.85 9.29 37.16 0.35 -1.50 16
24 O -0.54 -8.88 12.43 -35.23 -0.44 -9.31 16
25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16
27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16
28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16
30 H 0.08 1.69 7.56 -51.93 -0.39 1.29 16
31 H 0.05 0.93 7.20 -51.93 -0.37 0.55 16
32 H 0.27 7.15 8.30 -40.82 -0.34 6.81 16
33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.07 0.66 6.57 -51.93 -0.34 0.31 16
35 H 0.07 1.01 6.72 -51.93 -0.35 0.66 16
36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16
39 H 0.37 4.80 7.19 45.56 0.33 5.13 16
LS Contribution 324.84 15.07 4.90 4.90
Total: -1.00 -33.30 324.84 -4.45 -37.74
By element:
Atomic # 1 Polarization: 9.69 SS G_CDS: -5.14 Total: 4.55 kcal
Atomic # 6 Polarization: -8.07 SS G_CDS: 0.03 Total: -8.04 kcal
Atomic # 7 Polarization: -39.45 SS G_CDS: 1.61 Total: -37.84 kcal
Atomic # 8 Polarization: -15.29 SS G_CDS: -0.82 Total: -16.10 kcal
Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -33.30 -4.45 -37.74 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000958545666.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.821 kcal
(2) G-P(sol) polarization free energy of solvation -33.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.446 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds