Wall clock time and date at job start Mon Mar 30 2020 05:48:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42901 * 113.99793 * 2 1
4 4 C 1.53002 * 109.46846 * 179.97438 * 3 2 1
5 5 C 1.50710 * 109.46905 * 179.97438 * 4 3 2
6 6 C 1.39010 * 126.77118 * 269.97521 * 5 4 3
7 7 C 1.41488 * 126.02253 * 0.03799 * 6 5 4
8 8 H 1.08000 * 120.00479 * 359.72274 * 7 6 5
9 9 C 1.39745 * 120.00123 * 179.97438 * 7 6 5
10 10 N 1.30983 * 119.99866 * 359.72068 * 9 7 6
11 11 Si 1.86798 * 119.99961 * 179.72636 * 9 7 6
12 12 H 1.48493 * 109.47326 * 90.00156 * 11 9 7
13 13 H 1.48506 * 109.46545 * 209.99906 * 11 9 7
14 14 H 1.48498 * 109.47210 * 329.99617 * 11 9 7
15 15 N 1.34844 * 107.95770 * 180.29749 * 6 5 4
16 16 N 1.28674 * 109.63153 * 359.55606 * 15 6 5
17 17 N 1.35016 * 126.76933 * 90.01671 * 5 4 3
18 18 C 1.46499 * 126.49317 * 359.96914 * 17 5 4
19 19 H 1.09000 * 109.47010 * 359.97438 * 18 17 5
20 20 C 1.53006 * 109.47001 * 239.99612 * 18 17 5
21 21 C 1.53003 * 109.47303 * 119.99435 * 18 17 5
22 22 H 1.08996 * 109.47049 * 305.00316 * 21 18 17
23 23 C 1.53003 * 109.46953 * 184.99716 * 21 18 17
24 24 O 1.42901 * 109.46731 * 65.00122 * 21 18 17
25 25 H 1.09000 * 109.46871 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47054 * 300.00155 * 1 2 3
27 27 H 1.08999 * 109.47170 * 60.00252 * 1 2 3
28 28 H 1.08995 * 109.47228 * 60.00059 * 3 2 1
29 29 H 1.08999 * 109.46750 * 299.99635 * 3 2 1
30 30 H 1.08995 * 109.47078 * 60.00066 * 4 3 2
31 31 H 1.08999 * 109.47229 * 299.99441 * 4 3 2
32 32 H 0.97000 * 120.00385 * 179.97438 * 10 9 7
33 33 H 1.09004 * 109.46774 * 59.99866 * 20 18 17
34 34 H 1.08999 * 109.46983 * 179.97438 * 20 18 17
35 35 H 1.08994 * 109.47036 * 300.00202 * 20 18 17
36 36 H 1.08991 * 109.47163 * 60.00330 * 23 21 18
37 37 H 1.09003 * 109.46580 * 180.02562 * 23 21 18
38 38 H 1.08994 * 109.47248 * 299.99982 * 23 21 18
39 39 H 0.96701 * 114.00685 * 60.00137 * 24 21 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 6 4.1484 2.5615 0.0000
6 6 4.4877 3.3208 -1.1139
7 6 4.3178 2.9377 -2.4652
8 1 3.8932 1.9738 -2.7040
9 6 4.7043 3.8043 -3.4911
10 7 5.2188 4.9736 -3.2016
11 14 4.4870 3.2953 -5.2752
12 1 3.1486 3.7255 -5.7533
13 1 5.5387 3.9370 -6.1045
14 1 4.6014 1.8189 -5.3862
15 7 5.0125 4.4845 -0.6795
16 7 5.0142 4.5045 0.6070
17 7 4.4770 3.3004 1.0812
18 6 4.3046 2.9159 2.4843
19 1 3.8609 1.9217 2.5367
20 6 3.3848 3.9218 3.1794
21 6 5.6668 2.9043 3.1810
22 1 6.3496 2.2550 2.6331
23 6 5.5041 2.3835 4.6104
24 8 6.1957 4.2314 3.2149
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 1.6885 1.8464 0.8899
29 1 1.6885 1.8463 -0.8900
30 1 3.8574 0.6436 -0.8891
31 1 3.8567 0.6440 0.8909
32 1 5.4874 5.5750 -3.9136
33 1 2.4143 3.9299 2.6830
34 1 3.2562 3.6354 4.2233
35 1 3.8281 4.9161 3.1269
36 1 5.1007 1.3714 4.5846
37 1 6.4745 2.3758 5.1068
38 1 4.8214 3.0330 5.1582
39 1 5.6388 4.8650 3.6877
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000958545666.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:48:18
Heat of formation + Delta-G solvation = -43.172244 kcal
Electronic energy + Delta-G solvation = -21522.446432 eV
Core-core repulsion = 18273.018841 eV
Total energy + Delta-G solvation = -3249.427591 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.96496 -39.17649 -38.80817 -35.60683 -34.98549 -33.78836 -31.84007 -30.21499
-29.92134 -27.48508 -26.55173 -25.80925 -24.12383 -23.02076 -21.47342 -20.51856
-19.04001 -17.70133 -17.29086 -17.15754 -16.73179 -16.62153 -16.49928 -16.10385
-15.59937 -15.06312 -14.78866 -14.41192 -14.12328 -13.78891 -13.33243 -13.28435
-13.03127 -12.91449 -12.83593 -12.82913 -12.53776 -12.48698 -12.18208 -12.09923
-12.02349 -11.86918 -11.51481 -11.29243 -11.02317 -10.75593 -10.59140 -10.11517
-9.33151 -8.30342 -6.18265 1.00465 1.42700 1.44671 1.57101 1.96453
2.33279 2.35171 2.89005 3.35924 3.54410 3.69962 3.77904 3.98492
4.05618 4.14948 4.23964 4.25678 4.35294 4.51598 4.55524 4.64220
4.68060 4.71729 4.79826 4.85633 4.86389 4.98166 5.04920 5.07029
5.17016 5.28485 5.35758 5.54199 5.65405 6.22395 6.40271 6.48810
6.84609 6.90207 7.09657 8.34386 8.68986
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.014034 B = 0.007315 C = 0.005142
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1994.701197 B = 3826.914060 C = 5444.317996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.408 6.408
3 C 0.081 3.919
4 C -0.006 4.006
5 C -0.102 4.102
6 C 0.114 3.886
7 C -0.479 4.479
8 H 0.088 0.912
9 C 0.022 3.978
10 N -0.825 5.825
11 Si 0.982 3.018
12 H -0.265 1.265
13 H -0.277 1.277
14 H -0.254 1.254
15 N -0.291 5.291
16 N -0.130 5.130
17 N -0.348 5.348
18 C 0.114 3.886
19 H 0.120 0.880
20 C -0.157 4.157
21 C 0.099 3.901
22 H 0.072 0.928
23 C -0.170 4.170
24 O -0.568 6.568
25 H 0.106 0.894
26 H 0.051 0.949
27 H 0.040 0.960
28 H 0.051 0.949
29 H 0.037 0.963
30 H 0.076 0.924
31 H 0.085 0.915
32 H 0.272 0.728
33 H 0.053 0.947
34 H 0.117 0.883
35 H 0.058 0.942
36 H 0.086 0.914
37 H 0.069 0.931
38 H 0.084 0.916
39 H 0.381 0.619
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.886 -9.001 13.093 17.738
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.327 6.327
3 C 0.004 3.996
4 C -0.046 4.046
5 C -0.236 4.236
6 C -0.018 4.018
7 C -0.516 4.516
8 H 0.106 0.894
9 C -0.192 4.192
10 N -0.453 5.453
11 Si 0.804 3.196
12 H -0.190 1.190
13 H -0.203 1.203
14 H -0.177 1.177
15 N -0.161 5.161
16 N -0.105 5.105
17 N -0.144 5.144
18 C 0.011 3.989
19 H 0.138 0.862
20 C -0.215 4.215
21 C 0.038 3.962
22 H 0.090 0.910
23 C -0.228 4.228
24 O -0.375 6.375
25 H 0.124 0.876
26 H 0.070 0.930
27 H 0.058 0.942
28 H 0.069 0.931
29 H 0.055 0.945
30 H 0.095 0.905
31 H 0.103 0.897
32 H 0.082 0.918
33 H 0.072 0.928
34 H 0.135 0.865
35 H 0.077 0.923
36 H 0.104 0.896
37 H 0.088 0.912
38 H 0.103 0.897
39 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges -6.581 -7.837 13.126 16.644
hybrid contribution -0.867 -0.222 -1.043 1.374
sum -7.448 -8.059 12.083 16.323
Atomic orbital electron populations
1.22944 0.79549 1.04024 1.00586 1.87791 1.21473 1.27917 1.95549
1.22331 0.93220 0.84142 0.99902 1.19437 0.92497 0.89133 1.03496
1.21656 1.16052 0.98698 0.87157 1.19511 0.98357 0.89122 0.94824
1.18888 1.40850 1.03393 0.88442 0.89417 1.26733 0.92938 0.94149
1.05393 1.70183 1.31941 1.08035 1.35138 0.85209 0.78468 0.79593
0.76367 1.19031 1.20253 1.17727 1.75105 1.18576 1.21124 1.01307
1.81430 1.20463 1.02868 1.05769 1.49911 1.44929 1.13452 1.06131
1.22376 0.98660 1.01157 0.76682 0.86194 1.22138 0.98348 0.98849
1.02173 1.22192 0.92261 0.84636 0.97095 0.90989 1.22444 1.03820
1.03172 0.93380 1.86682 1.51051 1.19591 1.80195 0.87601 0.93044
0.94165 0.93102 0.94502 0.90505 0.89660 0.91792 0.92809 0.86511
0.92281 0.89557 0.91173 0.89677 0.76953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.53 11.01 113.37 1.25 1.78 16
2 O -0.41 -11.99 10.70 -148.98 -1.59 -13.58 16
3 C 0.08 2.67 5.92 71.98 0.43 3.09 16
4 C -0.01 -0.22 5.48 29.85 0.16 -0.05 16
5 C -0.10 -4.74 6.37 42.26 0.27 -4.47 16
6 C 0.11 6.53 6.72 39.67 0.27 6.79 16
7 C -0.48 -27.24 9.11 23.44 0.21 -27.03 16
8 H 0.09 4.62 7.30 -2.91 -0.02 4.60 16
9 C 0.02 1.21 5.49 85.18 0.47 1.68 16
10 N -0.82 -49.76 11.92 21.80 0.26 -49.50 16
11 Si 0.98 41.91 29.56 68.60 2.03 43.94 16
12 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16
13 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16
14 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16
15 N -0.29 -17.87 10.56 -52.52 -0.55 -18.42 16
16 N -0.13 -6.94 12.87 37.02 0.48 -6.46 16
17 N -0.35 -14.96 3.29 -311.26 -1.02 -15.98 16
18 C 0.11 3.27 2.97 44.99 0.13 3.41 16
19 H 0.12 2.86 6.80 -2.39 -0.02 2.85 16
20 C -0.16 -3.65 8.79 71.98 0.63 -3.02 16
21 C 0.10 2.66 3.57 30.60 0.11 2.77 16
22 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16
23 C -0.17 -2.72 9.29 71.98 0.67 -2.05 16
24 O -0.57 -18.32 12.43 -148.98 -1.85 -20.18 16
25 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16
26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
27 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16
28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
30 H 0.08 2.98 7.56 -2.39 -0.02 2.96 16
31 H 0.08 2.60 7.20 -2.39 -0.02 2.58 16
32 H 0.27 15.14 8.30 -92.71 -0.77 14.38 16
33 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16
34 H 0.12 1.61 6.57 -2.39 -0.02 1.60 16
35 H 0.06 1.55 6.72 -2.39 -0.02 1.54 16
36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
38 H 0.08 1.00 6.57 -2.39 -0.02 0.98 16
39 H 0.38 9.53 7.19 -74.06 -0.53 9.00 16
Total: -1.00 -78.12 324.84 2.86 -75.26
By element:
Atomic # 1 Polarization: 21.51 SS G_CDS: 0.52 Total: 22.04 kcal
Atomic # 6 Polarization: -21.71 SS G_CDS: 4.60 Total: -17.11 kcal
Atomic # 7 Polarization: -89.52 SS G_CDS: -0.84 Total: -90.36 kcal
Atomic # 8 Polarization: -30.31 SS G_CDS: -3.45 Total: -33.76 kcal
Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal
Total: -78.12 2.86 -75.26 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000958545666.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.084 kcal
(2) G-P(sol) polarization free energy of solvation -78.119 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.035 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.172 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds