Wall clock time and date at job start Mon Mar 30 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99793 * 2 1 4 4 C 1.53002 * 109.46846 * 179.97438 * 3 2 1 5 5 C 1.50710 * 109.46905 * 179.97438 * 4 3 2 6 6 C 1.39010 * 126.77118 * 269.97521 * 5 4 3 7 7 C 1.41488 * 126.02253 * 0.03799 * 6 5 4 8 8 H 1.08000 * 120.00479 * 359.72274 * 7 6 5 9 9 C 1.39745 * 120.00123 * 179.97438 * 7 6 5 10 10 N 1.30983 * 119.99866 * 359.72068 * 9 7 6 11 11 Si 1.86798 * 119.99961 * 179.72636 * 9 7 6 12 12 H 1.48493 * 109.47326 * 90.00156 * 11 9 7 13 13 H 1.48506 * 109.46545 * 209.99906 * 11 9 7 14 14 H 1.48498 * 109.47210 * 329.99617 * 11 9 7 15 15 N 1.34844 * 107.95770 * 180.29749 * 6 5 4 16 16 N 1.28674 * 109.63153 * 359.55606 * 15 6 5 17 17 N 1.35016 * 126.76933 * 90.01671 * 5 4 3 18 18 C 1.46499 * 126.49317 * 359.96914 * 17 5 4 19 19 H 1.09000 * 109.47010 * 359.97438 * 18 17 5 20 20 C 1.53006 * 109.47001 * 239.99612 * 18 17 5 21 21 C 1.53003 * 109.47303 * 119.99435 * 18 17 5 22 22 H 1.08996 * 109.47049 * 305.00316 * 21 18 17 23 23 C 1.53003 * 109.46953 * 184.99716 * 21 18 17 24 24 O 1.42901 * 109.46731 * 65.00122 * 21 18 17 25 25 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47054 * 300.00155 * 1 2 3 27 27 H 1.08999 * 109.47170 * 60.00252 * 1 2 3 28 28 H 1.08995 * 109.47228 * 60.00059 * 3 2 1 29 29 H 1.08999 * 109.46750 * 299.99635 * 3 2 1 30 30 H 1.08995 * 109.47078 * 60.00066 * 4 3 2 31 31 H 1.08999 * 109.47229 * 299.99441 * 4 3 2 32 32 H 0.97000 * 120.00385 * 179.97438 * 10 9 7 33 33 H 1.09004 * 109.46774 * 59.99866 * 20 18 17 34 34 H 1.08999 * 109.46983 * 179.97438 * 20 18 17 35 35 H 1.08994 * 109.47036 * 300.00202 * 20 18 17 36 36 H 1.08991 * 109.47163 * 60.00330 * 23 21 18 37 37 H 1.09003 * 109.46580 * 180.02562 * 23 21 18 38 38 H 1.08994 * 109.47248 * 299.99982 * 23 21 18 39 39 H 0.96701 * 114.00685 * 60.00137 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5615 0.0000 6 6 4.4877 3.3208 -1.1139 7 6 4.3178 2.9377 -2.4652 8 1 3.8932 1.9738 -2.7040 9 6 4.7043 3.8043 -3.4911 10 7 5.2188 4.9736 -3.2016 11 14 4.4870 3.2953 -5.2752 12 1 3.1486 3.7255 -5.7533 13 1 5.5387 3.9370 -6.1045 14 1 4.6014 1.8189 -5.3862 15 7 5.0125 4.4845 -0.6795 16 7 5.0142 4.5045 0.6070 17 7 4.4770 3.3004 1.0812 18 6 4.3046 2.9159 2.4843 19 1 3.8609 1.9217 2.5367 20 6 3.3848 3.9218 3.1794 21 6 5.6668 2.9043 3.1810 22 1 6.3496 2.2550 2.6331 23 6 5.5041 2.3835 4.6104 24 8 6.1957 4.2314 3.2149 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 3.8574 0.6436 -0.8891 31 1 3.8567 0.6440 0.8909 32 1 5.4874 5.5750 -3.9136 33 1 2.4143 3.9299 2.6830 34 1 3.2562 3.6354 4.2233 35 1 3.8281 4.9161 3.1269 36 1 5.1007 1.3714 4.5846 37 1 6.4745 2.3758 5.1068 38 1 4.8214 3.0330 5.1582 39 1 5.6388 4.8650 3.6877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:18 Heat of formation + Delta-G solvation = -43.172244 kcal Electronic energy + Delta-G solvation = -21522.446432 eV Core-core repulsion = 18273.018841 eV Total energy + Delta-G solvation = -3249.427591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96496 -39.17649 -38.80817 -35.60683 -34.98549 -33.78836 -31.84007 -30.21499 -29.92134 -27.48508 -26.55173 -25.80925 -24.12383 -23.02076 -21.47342 -20.51856 -19.04001 -17.70133 -17.29086 -17.15754 -16.73179 -16.62153 -16.49928 -16.10385 -15.59937 -15.06312 -14.78866 -14.41192 -14.12328 -13.78891 -13.33243 -13.28435 -13.03127 -12.91449 -12.83593 -12.82913 -12.53776 -12.48698 -12.18208 -12.09923 -12.02349 -11.86918 -11.51481 -11.29243 -11.02317 -10.75593 -10.59140 -10.11517 -9.33151 -8.30342 -6.18265 1.00465 1.42700 1.44671 1.57101 1.96453 2.33279 2.35171 2.89005 3.35924 3.54410 3.69962 3.77904 3.98492 4.05618 4.14948 4.23964 4.25678 4.35294 4.51598 4.55524 4.64220 4.68060 4.71729 4.79826 4.85633 4.86389 4.98166 5.04920 5.07029 5.17016 5.28485 5.35758 5.54199 5.65405 6.22395 6.40271 6.48810 6.84609 6.90207 7.09657 8.34386 8.68986 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.007315 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.701197 B = 3826.914060 C = 5444.317996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.081 3.919 4 C -0.006 4.006 5 C -0.102 4.102 6 C 0.114 3.886 7 C -0.479 4.479 8 H 0.088 0.912 9 C 0.022 3.978 10 N -0.825 5.825 11 Si 0.982 3.018 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.254 1.254 15 N -0.291 5.291 16 N -0.130 5.130 17 N -0.348 5.348 18 C 0.114 3.886 19 H 0.120 0.880 20 C -0.157 4.157 21 C 0.099 3.901 22 H 0.072 0.928 23 C -0.170 4.170 24 O -0.568 6.568 25 H 0.106 0.894 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.272 0.728 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 -9.001 13.093 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.004 3.996 4 C -0.046 4.046 5 C -0.236 4.236 6 C -0.018 4.018 7 C -0.516 4.516 8 H 0.106 0.894 9 C -0.192 4.192 10 N -0.453 5.453 11 Si 0.804 3.196 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.177 1.177 15 N -0.161 5.161 16 N -0.105 5.105 17 N -0.144 5.144 18 C 0.011 3.989 19 H 0.138 0.862 20 C -0.215 4.215 21 C 0.038 3.962 22 H 0.090 0.910 23 C -0.228 4.228 24 O -0.375 6.375 25 H 0.124 0.876 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -6.581 -7.837 13.126 16.644 hybrid contribution -0.867 -0.222 -1.043 1.374 sum -7.448 -8.059 12.083 16.323 Atomic orbital electron populations 1.22944 0.79549 1.04024 1.00586 1.87791 1.21473 1.27917 1.95549 1.22331 0.93220 0.84142 0.99902 1.19437 0.92497 0.89133 1.03496 1.21656 1.16052 0.98698 0.87157 1.19511 0.98357 0.89122 0.94824 1.18888 1.40850 1.03393 0.88442 0.89417 1.26733 0.92938 0.94149 1.05393 1.70183 1.31941 1.08035 1.35138 0.85209 0.78468 0.79593 0.76367 1.19031 1.20253 1.17727 1.75105 1.18576 1.21124 1.01307 1.81430 1.20463 1.02868 1.05769 1.49911 1.44929 1.13452 1.06131 1.22376 0.98660 1.01157 0.76682 0.86194 1.22138 0.98348 0.98849 1.02173 1.22192 0.92261 0.84636 0.97095 0.90989 1.22444 1.03820 1.03172 0.93380 1.86682 1.51051 1.19591 1.80195 0.87601 0.93044 0.94165 0.93102 0.94502 0.90505 0.89660 0.91792 0.92809 0.86511 0.92281 0.89557 0.91173 0.89677 0.76953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -11.99 10.70 -148.98 -1.59 -13.58 16 3 C 0.08 2.67 5.92 71.98 0.43 3.09 16 4 C -0.01 -0.22 5.48 29.85 0.16 -0.05 16 5 C -0.10 -4.74 6.37 42.26 0.27 -4.47 16 6 C 0.11 6.53 6.72 39.67 0.27 6.79 16 7 C -0.48 -27.24 9.11 23.44 0.21 -27.03 16 8 H 0.09 4.62 7.30 -2.91 -0.02 4.60 16 9 C 0.02 1.21 5.49 85.18 0.47 1.68 16 10 N -0.82 -49.76 11.92 21.80 0.26 -49.50 16 11 Si 0.98 41.91 29.56 68.60 2.03 43.94 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 13 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 15 N -0.29 -17.87 10.56 -52.52 -0.55 -18.42 16 16 N -0.13 -6.94 12.87 37.02 0.48 -6.46 16 17 N -0.35 -14.96 3.29 -311.26 -1.02 -15.98 16 18 C 0.11 3.27 2.97 44.99 0.13 3.41 16 19 H 0.12 2.86 6.80 -2.39 -0.02 2.85 16 20 C -0.16 -3.65 8.79 71.98 0.63 -3.02 16 21 C 0.10 2.66 3.57 30.60 0.11 2.77 16 22 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 23 C -0.17 -2.72 9.29 71.98 0.67 -2.05 16 24 O -0.57 -18.32 12.43 -148.98 -1.85 -20.18 16 25 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 2.98 7.56 -2.39 -0.02 2.96 16 31 H 0.08 2.60 7.20 -2.39 -0.02 2.58 16 32 H 0.27 15.14 8.30 -92.71 -0.77 14.38 16 33 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.12 1.61 6.57 -2.39 -0.02 1.60 16 35 H 0.06 1.55 6.72 -2.39 -0.02 1.54 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.00 6.57 -2.39 -0.02 0.98 16 39 H 0.38 9.53 7.19 -74.06 -0.53 9.00 16 Total: -1.00 -78.12 324.84 2.86 -75.26 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.52 Total: 22.04 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.60 Total: -17.11 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -0.84 Total: -90.36 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -3.45 Total: -33.76 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -78.12 2.86 -75.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.084 kcal (2) G-P(sol) polarization free energy of solvation -78.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds