Wall clock time and date at job start Mon Mar 30 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46953 * 179.97438 * 5 4 3 7 7 N 1.40125 * 126.48967 * 90.02815 * 6 5 4 8 8 N 1.28672 * 108.93424 * 179.97438 * 7 6 5 9 9 C 1.34839 * 109.63481 * 359.97438 * 8 7 6 10 10 C 1.41495 * 126.02105 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00387 * 180.02562 * 10 9 8 12 12 C 1.39742 * 119.99706 * 0.02562 * 10 9 8 13 13 N 1.30980 * 120.00439 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47146 * 60.00050 * 14 12 10 16 16 H 1.48496 * 109.47345 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47492 * 300.00582 * 14 12 10 18 18 C 1.35017 * 126.49778 * 269.71354 * 6 5 4 19 19 C 1.50701 * 126.76986 * 0.02562 * 18 6 5 20 20 H 1.09008 * 109.46791 * 344.99961 * 19 18 6 21 21 C 1.53000 * 109.47211 * 104.99922 * 19 18 6 22 22 O 1.42900 * 109.47402 * 225.00411 * 19 18 6 23 23 C 1.42900 * 114.00274 * 89.99390 * 22 19 18 24 24 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 26 26 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 27 27 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 28 28 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 29 29 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 30 30 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 31 31 H 1.08996 * 109.46952 * 300.00302 * 5 4 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 33 33 H 0.96995 * 120.00761 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.46796 * 60.00171 * 21 19 18 35 35 H 1.09000 * 109.46630 * 179.97438 * 21 19 18 36 36 H 1.08999 * 109.47220 * 300.00002 * 21 19 18 37 37 H 1.09004 * 109.47113 * 60.00431 * 23 22 19 38 38 H 1.09000 * 109.47082 * 180.02562 * 23 22 19 39 39 H 1.09001 * 109.47330 * 300.00232 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4666 0.0025 7 7 6.4499 2.4014 -1.1233 8 7 7.6725 2.3048 -0.7342 9 6 7.7202 2.3011 0.6134 10 6 8.8897 2.2082 1.4044 11 1 8.8148 2.2138 2.4817 12 6 10.1416 2.1092 0.7915 13 7 10.2326 2.1029 -0.5151 14 14 11.6856 1.9873 1.8357 15 1 11.6092 0.7771 2.6930 16 1 12.8751 1.8939 0.9516 17 1 11.8002 3.1945 2.6929 18 6 6.4182 2.4084 1.0886 19 6 5.9850 2.4493 2.5314 20 1 4.9539 2.7977 2.5914 21 6 6.0852 1.0464 3.1339 22 8 6.8323 3.3414 3.2581 23 6 6.3684 4.6928 3.2829 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8567 0.6438 0.8909 30 1 3.8575 0.6435 -0.8891 31 1 3.8365 3.1234 -0.8886 32 1 3.8358 3.1229 0.8913 33 1 11.1016 2.0346 -0.9406 34 1 7.1162 0.6981 3.0738 35 1 5.7723 1.0762 4.1775 36 1 5.4389 0.3659 2.5796 37 1 5.3847 4.7308 3.7509 38 1 7.0662 5.3061 3.8530 39 1 6.3007 5.0725 2.2634 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:05 Heat of formation + Delta-G solvation = -6.338569 kcal Electronic energy + Delta-G solvation = -21290.790071 eV Core-core repulsion = 18042.959709 eV Total energy + Delta-G solvation = -3247.830363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07196 -38.08616 -37.24717 -34.78481 -33.12874 -31.77345 -30.52643 -28.53610 -27.14563 -25.90177 -25.47091 -24.56174 -22.52572 -21.90803 -20.22858 -19.02490 -17.29635 -16.42843 -16.24794 -15.88178 -15.62361 -15.06910 -14.70127 -14.57886 -14.17223 -14.03282 -13.75379 -12.94105 -12.69273 -12.34306 -12.08971 -11.98531 -11.84275 -11.63759 -11.21165 -11.17600 -11.12438 -11.02962 -10.87923 -10.71997 -10.41786 -10.13445 -9.81315 -9.71047 -9.22054 -9.14777 -8.72235 -8.45698 -7.37607 -6.30145 -4.06563 2.77128 3.23624 3.26304 3.29212 3.38936 3.85443 4.21574 4.35131 4.47325 4.84815 4.97031 5.11623 5.20133 5.23678 5.27791 5.37755 5.40982 5.48852 5.56789 5.61518 5.68159 5.73146 5.86405 6.02219 6.06775 6.11961 6.23263 6.34056 6.39573 6.83836 6.99102 7.01365 7.19021 7.29447 7.58922 7.92019 8.17467 8.64216 8.90503 9.18853 10.23760 10.66460 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.005204 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.257081 B = 5379.094986 C = 5897.618721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.135 4.135 5 C 0.144 3.856 6 N -0.376 5.376 7 N -0.124 5.124 8 N -0.230 5.230 9 C 0.174 3.826 10 C -0.433 4.433 11 H 0.091 0.909 12 C 0.070 3.930 13 N -0.778 5.778 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.268 1.268 18 C -0.157 4.157 19 C 0.196 3.804 20 H 0.041 0.959 21 C -0.140 4.140 22 O -0.363 6.363 23 C 0.038 3.962 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.271 0.729 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 0.662 5.535 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.174 4.174 5 C 0.019 3.981 6 N -0.174 5.174 7 N -0.100 5.100 8 N -0.103 5.103 9 C 0.045 3.955 10 C -0.468 4.468 11 H 0.109 0.891 12 C -0.149 4.149 13 N -0.404 5.404 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.287 4.287 19 C 0.135 3.865 20 H 0.059 0.941 21 C -0.197 4.197 22 O -0.280 6.280 23 C -0.059 4.059 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.331 0.434 3.888 14.856 hybrid contribution 0.033 0.390 1.294 1.352 sum -14.298 0.824 5.182 15.230 Atomic orbital electron populations 1.22729 0.81208 1.02676 0.99863 1.87907 1.19525 1.28077 1.95396 1.22439 0.93811 0.84660 1.00173 1.21937 0.92581 0.98079 1.04803 1.21125 0.77804 0.96277 1.02896 1.49338 1.05145 1.56770 1.06179 1.81475 0.96334 1.24182 1.08033 1.75119 1.07320 1.15423 1.12484 1.18926 0.91165 0.97695 0.87688 1.18705 0.88080 1.46098 0.93953 0.89085 1.25856 1.00430 0.93651 0.94939 1.70017 1.25522 1.35691 1.09204 0.86412 0.80624 0.79548 0.80202 1.19304 1.20829 1.19301 1.21776 0.92206 1.25459 0.89248 1.19721 0.90729 0.90502 0.85504 0.94081 1.21793 1.04160 0.94673 0.99107 1.88015 1.49992 1.17319 1.72642 1.22617 0.98124 0.84772 1.00417 0.89712 0.94148 0.94132 0.93221 0.93049 0.90489 0.90121 0.89652 0.90518 0.91821 0.90377 0.92947 0.92144 0.95391 0.90267 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.94 10.70 -35.23 -0.38 -5.32 16 3 C 0.07 0.75 5.94 37.16 0.22 0.97 16 4 C -0.13 -1.94 5.91 -26.73 -0.16 -2.10 16 5 C 0.14 2.23 6.27 -4.05 -0.03 2.21 16 6 N -0.38 -8.24 3.63 -56.18 -0.20 -8.44 16 7 N -0.12 -3.25 13.74 60.35 0.83 -2.42 16 8 N -0.23 -6.77 10.55 32.05 0.34 -6.43 16 9 C 0.17 4.85 6.69 -85.02 -0.57 4.28 16 10 C -0.43 -12.02 8.67 -37.78 -0.33 -12.35 16 11 H 0.09 2.43 6.57 -52.49 -0.34 2.09 16 12 C 0.07 1.90 5.49 -17.35 -0.10 1.81 16 13 N -0.78 -22.41 11.92 55.54 0.66 -21.75 16 14 Si 0.91 20.23 29.56 -169.99 -5.02 15.21 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 C -0.16 -3.65 6.04 -80.90 -0.49 -4.14 16 19 C 0.20 3.74 2.91 -27.88 -0.08 3.66 16 20 H 0.04 0.68 6.53 -51.92 -0.34 0.34 16 21 C -0.14 -2.44 9.54 37.16 0.35 -2.08 16 22 O -0.36 -7.24 8.81 -35.23 -0.31 -7.55 16 23 C 0.04 0.61 10.81 101.05 1.09 1.70 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.18 7.88 -51.93 -0.41 0.77 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.01 7.02 -51.93 -0.36 0.65 16 33 H 0.27 7.21 8.30 -40.82 -0.34 6.88 16 34 H 0.08 1.54 7.81 -51.93 -0.41 1.14 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 37 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -33.54 331.00 -4.12 -37.66 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.05 Total: -1.28 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 1.04 Total: -4.66 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 1.63 Total: -39.04 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.69 Total: -12.87 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.54 -4.12 -37.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.317 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds