Wall clock time and date at job start Mon Mar 30 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46953 * 179.97438 * 5 4 3 7 7 N 1.40125 * 126.48967 * 90.02815 * 6 5 4 8 8 N 1.28672 * 108.93424 * 179.97438 * 7 6 5 9 9 C 1.34839 * 109.63481 * 359.97438 * 8 7 6 10 10 C 1.41495 * 126.02105 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00387 * 180.02562 * 10 9 8 12 12 C 1.39742 * 119.99706 * 0.02562 * 10 9 8 13 13 N 1.30980 * 120.00439 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47146 * 60.00050 * 14 12 10 16 16 H 1.48496 * 109.47345 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47492 * 300.00582 * 14 12 10 18 18 C 1.35017 * 126.49778 * 269.71354 * 6 5 4 19 19 C 1.50701 * 126.76986 * 0.02562 * 18 6 5 20 20 H 1.09008 * 109.46791 * 344.99961 * 19 18 6 21 21 C 1.53000 * 109.47211 * 104.99922 * 19 18 6 22 22 O 1.42900 * 109.47402 * 225.00411 * 19 18 6 23 23 C 1.42900 * 114.00274 * 89.99390 * 22 19 18 24 24 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 26 26 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 27 27 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 28 28 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 29 29 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 30 30 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 31 31 H 1.08996 * 109.46952 * 300.00302 * 5 4 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 33 33 H 0.96995 * 120.00761 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.46796 * 60.00171 * 21 19 18 35 35 H 1.09000 * 109.46630 * 179.97438 * 21 19 18 36 36 H 1.08999 * 109.47220 * 300.00002 * 21 19 18 37 37 H 1.09004 * 109.47113 * 60.00431 * 23 22 19 38 38 H 1.09000 * 109.47082 * 180.02562 * 23 22 19 39 39 H 1.09001 * 109.47330 * 300.00232 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4666 0.0025 7 7 6.4499 2.4014 -1.1233 8 7 7.6725 2.3048 -0.7342 9 6 7.7202 2.3011 0.6134 10 6 8.8897 2.2082 1.4044 11 1 8.8148 2.2138 2.4817 12 6 10.1416 2.1092 0.7915 13 7 10.2326 2.1029 -0.5151 14 14 11.6856 1.9873 1.8357 15 1 11.6092 0.7771 2.6930 16 1 12.8751 1.8939 0.9516 17 1 11.8002 3.1945 2.6929 18 6 6.4182 2.4084 1.0886 19 6 5.9850 2.4493 2.5314 20 1 4.9539 2.7977 2.5914 21 6 6.0852 1.0464 3.1339 22 8 6.8323 3.3414 3.2581 23 6 6.3684 4.6928 3.2829 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8567 0.6438 0.8909 30 1 3.8575 0.6435 -0.8891 31 1 3.8365 3.1234 -0.8886 32 1 3.8358 3.1229 0.8913 33 1 11.1016 2.0346 -0.9406 34 1 7.1162 0.6981 3.0738 35 1 5.7723 1.0762 4.1775 36 1 5.4389 0.3659 2.5796 37 1 5.3847 4.7308 3.7509 38 1 7.0662 5.3061 3.8530 39 1 6.3007 5.0725 2.2634 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:04 Heat of formation + Delta-G solvation = -31.308430 kcal Electronic energy + Delta-G solvation = -21291.872846 eV Core-core repulsion = 18042.959709 eV Total energy + Delta-G solvation = -3248.913137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.95168 -38.97498 -38.76556 -36.28046 -35.01226 -33.30905 -32.05816 -30.37104 -28.15421 -27.22181 -27.01141 -25.98823 -24.15230 -23.12707 -22.08600 -20.69864 -19.09733 -17.61688 -17.39908 -17.15945 -16.96918 -16.57988 -16.27699 -15.92927 -15.58839 -15.31952 -15.27377 -14.56691 -14.18392 -13.49859 -13.44377 -13.31141 -13.17049 -12.95225 -12.79970 -12.76932 -12.67331 -12.33590 -12.19814 -12.05573 -11.96048 -11.72963 -11.58878 -11.13296 -10.85176 -10.61411 -10.45268 -10.31963 -9.36059 -8.26906 -6.12005 0.94141 1.44238 1.46987 1.56717 1.89585 2.35213 2.36692 2.85966 3.06461 3.59328 3.68996 3.92931 4.02830 4.10331 4.13567 4.22336 4.35689 4.44764 4.48735 4.56148 4.56660 4.57478 4.67706 4.81602 4.87655 4.88444 4.90444 4.96218 5.09835 5.13336 5.26452 5.44058 5.45958 5.60799 6.22934 6.37822 6.51307 6.56819 6.93701 7.16190 8.29362 8.72286 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.005204 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.257081 B = 5379.094986 C = 5897.618721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.072 3.928 4 C -0.125 4.125 5 C 0.129 3.871 6 N -0.357 5.357 7 N -0.165 5.165 8 N -0.287 5.287 9 C 0.127 3.873 10 C -0.459 4.459 11 H 0.093 0.907 12 C 0.018 3.982 13 N -0.829 5.829 14 Si 0.980 3.020 15 H -0.259 1.259 16 H -0.279 1.279 17 H -0.261 1.261 18 C -0.118 4.118 19 C 0.192 3.808 20 H 0.083 0.917 21 C -0.136 4.136 22 O -0.386 6.386 23 C 0.031 3.969 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.271 0.729 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 1.264 8.148 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.005 4.005 4 C -0.164 4.164 5 C 0.007 3.993 6 N -0.153 5.153 7 N -0.140 5.140 8 N -0.157 5.157 9 C -0.004 4.004 10 C -0.495 4.495 11 H 0.111 0.889 12 C -0.195 4.195 13 N -0.457 5.457 14 Si 0.802 3.198 15 H -0.184 1.184 16 H -0.204 1.204 17 H -0.185 1.185 18 C -0.253 4.253 19 C 0.132 3.868 20 H 0.101 0.899 21 C -0.193 4.193 22 O -0.303 6.303 23 C -0.065 4.065 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -17.104 1.045 6.455 18.311 hybrid contribution 0.531 0.239 0.567 0.813 sum -16.573 1.284 7.023 18.045 Atomic orbital electron populations 1.22937 0.79098 1.03783 1.01183 1.87853 1.21851 1.28820 1.95697 1.22382 0.91054 0.84755 1.02261 1.21767 0.95315 0.96408 1.02944 1.21722 0.73872 0.97941 1.05719 1.49846 1.07536 1.52931 1.05027 1.81347 0.96229 1.27119 1.09345 1.75064 1.08928 1.17903 1.13768 1.19483 0.93298 0.99829 0.87828 1.18928 0.88982 1.47584 0.94035 0.88870 1.26763 1.03699 0.93004 0.96030 1.70179 1.26070 1.38325 1.11175 0.85291 0.76276 0.79863 0.78348 1.18364 1.20430 1.18507 1.22662 0.91223 1.19763 0.91620 1.20051 0.92484 0.91793 0.82520 0.89923 1.21769 1.02577 0.93556 1.01428 1.88000 1.51158 1.18987 1.72154 1.22846 1.00722 0.83023 0.99904 0.88900 0.92505 0.93053 0.90427 0.91574 0.91377 0.93071 0.87911 0.86626 0.91952 0.93466 0.89327 0.91345 0.91387 0.88903 0.96446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.61 10.70 -148.98 -1.59 -11.20 16 3 C 0.07 1.38 5.94 71.98 0.43 1.81 16 4 C -0.13 -3.33 5.91 30.60 0.18 -3.15 16 5 C 0.13 3.65 6.27 86.38 0.54 4.19 16 6 N -0.36 -15.41 3.63 -331.66 -1.20 -16.61 16 7 N -0.16 -8.95 13.74 37.02 0.51 -8.44 16 8 N -0.29 -17.70 10.55 -52.52 -0.55 -18.25 16 9 C 0.13 7.33 6.69 39.67 0.27 7.59 16 10 C -0.46 -26.34 8.67 23.44 0.20 -26.14 16 11 H 0.09 5.09 6.57 -2.91 -0.02 5.07 16 12 C 0.02 1.03 5.49 85.18 0.47 1.50 16 13 N -0.83 -50.37 11.92 21.80 0.26 -50.11 16 14 Si 0.98 42.80 29.56 68.60 2.03 44.83 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 18 C -0.12 -5.43 6.04 42.25 0.26 -5.17 16 19 C 0.19 6.78 2.91 29.85 0.09 6.86 16 20 H 0.08 2.26 6.53 -2.38 -0.02 2.24 16 21 C -0.14 -4.39 9.54 71.98 0.69 -3.70 16 22 O -0.39 -14.46 8.81 -148.98 -1.31 -15.77 16 23 C 0.03 0.91 10.81 113.37 1.23 2.14 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.93 7.88 -2.39 -0.02 1.91 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.10 2.62 8.14 -2.39 -0.02 2.61 16 32 H 0.12 2.44 7.02 -2.39 -0.02 2.43 16 33 H 0.27 15.25 8.30 -92.71 -0.77 14.48 16 34 H 0.05 1.83 7.81 -2.39 -0.02 1.81 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.07 7.88 -2.39 -0.02 2.05 16 37 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -78.96 331.00 4.75 -74.21 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.03 Total: 13.82 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 5.59 Total: -12.46 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -0.99 Total: -93.42 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -2.91 Total: -26.97 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -78.96 4.75 -74.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.900 kcal (2) G-P(sol) polarization free energy of solvation -78.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds