Wall clock time and date at job start Mon Mar 30 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 C 1.39010 * 126.77252 * 270.02490 * 5 4 3 7 7 C 1.41491 * 126.02270 * 0.02562 * 6 5 4 8 8 H 1.08001 * 119.99896 * 359.97438 * 7 6 5 9 9 C 1.39736 * 120.00043 * 179.97438 * 7 6 5 10 10 N 1.30982 * 120.00084 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99851 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47227 * 60.00185 * 11 9 7 13 13 H 1.48503 * 109.47304 * 180.02562 * 11 9 7 14 14 H 1.48510 * 109.47026 * 299.99952 * 11 9 7 15 15 N 1.34850 * 107.96046 * 179.97438 * 6 5 4 16 16 N 1.28671 * 109.63099 * 0.02562 * 15 6 5 17 17 N 1.35022 * 126.76980 * 89.70511 * 5 4 3 18 18 C 1.46502 * 126.49473 * 359.97438 * 17 5 4 19 19 C 1.53001 * 109.47066 * 89.99488 * 18 17 5 20 20 C 1.53007 * 109.46966 * 180.02562 * 19 18 17 21 21 H 1.08995 * 109.46646 * 304.99818 * 20 19 18 22 22 C 1.52998 * 109.46866 * 185.00075 * 20 19 18 23 23 O 1.42900 * 109.47165 * 64.99877 * 20 19 18 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 30 30 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 31 31 H 0.97005 * 119.99964 * 179.97438 * 10 9 7 32 32 H 1.08999 * 109.47076 * 209.99653 * 18 17 5 33 33 H 1.08996 * 109.46742 * 329.99964 * 18 17 5 34 34 H 1.08999 * 109.47308 * 300.00023 * 19 18 17 35 35 H 1.08996 * 109.47237 * 60.00138 * 19 18 17 36 36 H 1.08999 * 109.47348 * 59.99757 * 22 20 19 37 37 H 1.09004 * 109.46757 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.47339 * 299.99448 * 22 20 19 39 39 H 0.96697 * 113.99809 * 60.00018 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4862 3.3224 -1.1132 7 6 4.3144 2.9413 -2.4649 8 1 3.8858 1.9794 -2.7045 9 6 4.6994 3.8096 -3.4899 10 7 5.2197 4.9760 -3.1993 11 14 4.4732 3.3062 -5.2745 12 1 3.0339 3.0545 -5.5393 13 1 4.9571 4.3949 -6.1611 14 1 5.2496 2.0688 -5.5420 15 7 5.0052 4.4883 -0.6778 16 7 5.0139 4.5040 0.6088 17 7 4.4726 3.3012 1.0819 18 6 4.2944 2.9181 2.4847 19 6 5.5499 2.1974 2.9799 20 6 5.3636 1.7967 4.4448 21 1 5.1080 2.6781 5.0328 22 6 6.6628 1.1882 4.9763 23 8 4.3111 0.8353 4.5455 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.8575 0.6435 0.8891 30 1 3.8568 0.6439 -0.8908 31 1 5.4872 5.5786 -3.9109 32 1 4.1268 3.8111 3.0867 33 1 3.4351 2.2534 2.5734 34 1 5.7175 1.3043 2.3779 35 1 6.4092 2.8619 2.8911 36 1 7.4656 1.9216 4.8994 37 1 6.5299 0.9024 6.0197 38 1 6.9185 0.3067 4.3882 39 1 4.4713 0.0231 4.0457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:42 Heat of formation + Delta-G solvation = -26.272644 kcal Electronic energy + Delta-G solvation = -21036.391102 eV Core-core repulsion = 17787.696333 eV Total energy + Delta-G solvation = -3248.694769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.07962 -37.96957 -37.52477 -34.26654 -33.23470 -32.33259 -31.11271 -28.57975 -28.40649 -26.22445 -24.89879 -23.75799 -22.53656 -21.49155 -20.30731 -18.95950 -17.15798 -16.46418 -16.10120 -15.95860 -15.67458 -15.08570 -14.88049 -14.68257 -14.09840 -13.73866 -13.60059 -13.12414 -12.94316 -12.65017 -12.35937 -12.07719 -11.84673 -11.58670 -11.33182 -11.11736 -11.05578 -10.95403 -10.91046 -10.76480 -10.54196 -10.33512 -10.14401 -9.75334 -9.34996 -9.27554 -8.87343 -8.43751 -7.43829 -6.38440 -4.18527 2.74882 3.17150 3.20146 3.22135 3.56267 4.11786 4.13414 4.28888 4.33232 4.75325 4.91701 5.01892 5.21725 5.40479 5.43844 5.46161 5.52498 5.56168 5.57669 5.63394 5.73055 5.74744 5.83350 5.87132 5.94378 6.09384 6.10891 6.25456 6.34331 6.57838 6.90153 7.12440 7.40347 7.46385 7.50670 7.54713 8.15297 8.41469 8.80498 9.06916 10.18816 10.58001 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.005987 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.404412 B = 4675.524249 C = 6040.210361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.067 3.933 4 C -0.006 4.006 5 C -0.121 4.121 6 C 0.159 3.841 7 C -0.450 4.450 8 H 0.081 0.919 9 C 0.074 3.926 10 N -0.775 5.775 11 Si 0.906 3.094 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.268 1.268 15 N -0.230 5.230 16 N -0.128 5.128 17 N -0.375 5.375 18 C 0.142 3.858 19 C -0.166 4.166 20 C 0.105 3.895 21 H 0.100 0.900 22 C -0.184 4.184 23 O -0.565 6.565 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.273 0.727 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 -8.803 10.106 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.010 4.010 4 C -0.046 4.046 5 C -0.252 4.252 6 C 0.029 3.971 7 C -0.486 4.486 8 H 0.099 0.901 9 C -0.146 4.146 10 N -0.401 5.401 11 Si 0.731 3.269 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.193 1.193 15 N -0.102 5.102 16 N -0.104 5.104 17 N -0.172 5.172 18 C 0.018 3.982 19 C -0.205 4.205 20 C 0.045 3.955 21 H 0.118 0.882 22 C -0.241 4.241 23 O -0.370 6.370 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.628 -6.886 10.793 13.069 hybrid contribution -0.415 -1.291 -1.368 1.926 sum -3.043 -8.176 9.425 12.843 Atomic orbital electron populations 1.22663 0.81820 1.02015 0.99822 1.87818 1.19095 1.29157 1.95461 1.22676 0.94606 0.83416 1.00321 1.19351 0.91211 0.91567 1.02472 1.21064 1.18631 0.97846 0.87628 1.18988 0.96793 0.88023 0.93303 1.18525 1.39568 1.02876 0.87601 0.90070 1.25783 0.93633 0.94418 1.00729 1.70007 1.29581 1.06508 1.33983 0.86421 0.79373 0.78862 0.82208 1.19307 1.20600 1.19252 1.75119 1.16190 1.19341 0.99526 1.81480 1.20103 1.01563 1.07293 1.49497 1.48038 1.14861 1.04791 1.21294 0.97761 0.99652 0.79478 1.22729 0.99485 1.01966 0.96336 1.21873 0.86997 0.91831 0.94751 0.88216 1.22483 0.98151 1.01770 1.01730 1.86564 1.45184 1.30504 1.74774 0.94181 0.90153 0.94553 0.92348 0.94325 0.92505 0.89706 0.91659 0.90008 0.89697 0.90992 0.90189 0.91464 0.91881 0.92254 0.77705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.40 -6.43 10.70 -35.23 -0.38 -6.81 16 3 C 0.07 1.17 5.92 37.16 0.22 1.39 16 4 C -0.01 -0.12 5.44 -27.89 -0.15 -0.27 16 5 C -0.12 -2.78 6.37 -80.90 -0.52 -3.29 16 6 C 0.16 4.34 6.72 -85.02 -0.57 3.77 16 7 C -0.45 -12.18 9.11 -37.78 -0.34 -12.53 16 8 H 0.08 2.05 7.30 -52.49 -0.38 1.67 16 9 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 10 N -0.77 -21.90 11.92 55.54 0.66 -21.24 16 11 Si 0.91 19.58 29.56 -169.99 -5.02 14.55 16 12 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 15 N -0.23 -6.65 10.56 32.05 0.34 -6.31 16 16 N -0.13 -3.33 13.74 60.35 0.83 -2.50 16 17 N -0.38 -8.17 3.63 -56.18 -0.20 -8.37 16 18 C 0.14 2.29 6.05 -4.04 -0.02 2.26 16 19 C -0.17 -2.22 5.22 -26.73 -0.14 -2.36 16 20 C 0.11 1.12 3.59 -26.73 -0.10 1.02 16 21 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 22 C -0.18 -1.66 9.53 37.16 0.35 -1.30 16 23 O -0.56 -6.28 12.87 -35.23 -0.45 -6.74 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 30 H 0.08 1.65 7.56 -51.93 -0.39 1.25 16 31 H 0.27 7.10 8.30 -40.82 -0.34 6.76 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.29 7.46 -51.93 -0.39 0.90 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.38 3.11 9.04 45.56 0.41 3.52 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -32.51 334.00 -4.81 -37.32 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.37 Total: 2.98 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.25 Total: -7.91 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 1.63 Total: -38.43 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.83 Total: -13.54 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.51 -4.81 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.047 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds