Wall clock time and date at job start Mon Mar 30 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 C 1.39010 * 126.77252 * 270.02490 * 5 4 3 7 7 C 1.41491 * 126.02270 * 0.02562 * 6 5 4 8 8 H 1.08001 * 119.99896 * 359.97438 * 7 6 5 9 9 C 1.39736 * 120.00043 * 179.97438 * 7 6 5 10 10 N 1.30982 * 120.00084 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99851 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47227 * 60.00185 * 11 9 7 13 13 H 1.48503 * 109.47304 * 180.02562 * 11 9 7 14 14 H 1.48510 * 109.47026 * 299.99952 * 11 9 7 15 15 N 1.34850 * 107.96046 * 179.97438 * 6 5 4 16 16 N 1.28671 * 109.63099 * 0.02562 * 15 6 5 17 17 N 1.35022 * 126.76980 * 89.70511 * 5 4 3 18 18 C 1.46502 * 126.49473 * 359.97438 * 17 5 4 19 19 C 1.53001 * 109.47066 * 89.99488 * 18 17 5 20 20 C 1.53007 * 109.46966 * 180.02562 * 19 18 17 21 21 H 1.08995 * 109.46646 * 304.99818 * 20 19 18 22 22 C 1.52998 * 109.46866 * 185.00075 * 20 19 18 23 23 O 1.42900 * 109.47165 * 64.99877 * 20 19 18 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 30 30 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 31 31 H 0.97005 * 119.99964 * 179.97438 * 10 9 7 32 32 H 1.08999 * 109.47076 * 209.99653 * 18 17 5 33 33 H 1.08996 * 109.46742 * 329.99964 * 18 17 5 34 34 H 1.08999 * 109.47308 * 300.00023 * 19 18 17 35 35 H 1.08996 * 109.47237 * 60.00138 * 19 18 17 36 36 H 1.08999 * 109.47348 * 59.99757 * 22 20 19 37 37 H 1.09004 * 109.46757 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.47339 * 299.99448 * 22 20 19 39 39 H 0.96697 * 113.99809 * 60.00018 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4862 3.3224 -1.1132 7 6 4.3144 2.9413 -2.4649 8 1 3.8858 1.9794 -2.7045 9 6 4.6994 3.8096 -3.4899 10 7 5.2197 4.9760 -3.1993 11 14 4.4732 3.3062 -5.2745 12 1 3.0339 3.0545 -5.5393 13 1 4.9571 4.3949 -6.1611 14 1 5.2496 2.0688 -5.5420 15 7 5.0052 4.4883 -0.6778 16 7 5.0139 4.5040 0.6088 17 7 4.4726 3.3012 1.0819 18 6 4.2944 2.9181 2.4847 19 6 5.5499 2.1974 2.9799 20 6 5.3636 1.7967 4.4448 21 1 5.1080 2.6781 5.0328 22 6 6.6628 1.1882 4.9763 23 8 4.3111 0.8353 4.5455 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.8575 0.6435 0.8891 30 1 3.8568 0.6439 -0.8908 31 1 5.4872 5.5786 -3.9109 32 1 4.1268 3.8111 3.0867 33 1 3.4351 2.2534 2.5734 34 1 5.7175 1.3043 2.3779 35 1 6.4092 2.8619 2.8911 36 1 7.4656 1.9216 4.8994 37 1 6.5299 0.9024 6.0197 38 1 6.9185 0.3067 4.3882 39 1 4.4713 0.0231 4.0457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:42 Heat of formation + Delta-G solvation = -51.274968 kcal Electronic energy + Delta-G solvation = -21037.475284 eV Core-core repulsion = 17787.696333 eV Total energy + Delta-G solvation = -3249.778951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95633 -38.92941 -38.78809 -35.86824 -35.04959 -33.80138 -32.35068 -30.28222 -29.73492 -27.49559 -26.59806 -25.16831 -24.00357 -22.48024 -22.18849 -20.67629 -19.02849 -17.48274 -17.38223 -17.15205 -16.81199 -16.75446 -16.48802 -16.05858 -15.46972 -15.14711 -14.73171 -14.56556 -14.30879 -14.10498 -13.79282 -13.05933 -12.98587 -12.88192 -12.81728 -12.79576 -12.70767 -12.25947 -12.20448 -12.11320 -11.98491 -11.74092 -11.63219 -11.25884 -11.02568 -10.80577 -10.57770 -10.23493 -9.40448 -8.31626 -6.20934 0.92222 1.44155 1.46250 1.56387 1.94032 2.30603 2.33483 2.89696 3.45954 3.52152 3.71917 3.85733 3.95406 4.04182 4.20740 4.24970 4.32440 4.40301 4.44567 4.52285 4.57156 4.62889 4.65920 4.76226 4.86651 4.89616 4.98348 5.03941 5.10474 5.15753 5.25425 5.30890 5.51150 5.60631 6.22785 6.37753 6.41963 6.84702 6.86157 7.07843 8.25453 8.67467 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.005987 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.404412 B = 4675.524249 C = 6040.210361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.080 3.920 4 C -0.005 4.005 5 C -0.087 4.087 6 C 0.114 3.886 7 C -0.479 4.479 8 H 0.090 0.910 9 C 0.023 3.977 10 N -0.825 5.825 11 Si 0.983 3.017 12 H -0.259 1.259 13 H -0.278 1.278 14 H -0.258 1.258 15 N -0.282 5.282 16 N -0.165 5.165 17 N -0.356 5.356 18 C 0.129 3.871 19 C -0.155 4.155 20 C 0.116 3.884 21 H 0.104 0.896 22 C -0.180 4.180 23 O -0.574 6.574 24 H 0.040 0.960 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.273 0.727 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -11.360 11.260 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.002 3.998 4 C -0.045 4.045 5 C -0.221 4.221 6 C -0.019 4.019 7 C -0.515 4.515 8 H 0.108 0.892 9 C -0.191 4.191 10 N -0.453 5.453 11 Si 0.804 3.196 12 H -0.183 1.183 13 H -0.203 1.203 14 H -0.183 1.183 15 N -0.152 5.152 16 N -0.140 5.140 17 N -0.151 5.151 18 C 0.007 3.993 19 C -0.194 4.194 20 C 0.056 3.944 21 H 0.122 0.878 22 C -0.237 4.237 23 O -0.382 6.382 24 H 0.059 0.941 25 H 0.125 0.875 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.751 -9.437 12.016 15.733 hybrid contribution -0.174 -0.662 -1.483 1.633 sum -3.925 -10.099 10.534 15.111 Atomic orbital electron populations 1.22942 0.79612 1.04041 1.00512 1.87784 1.21395 1.27786 1.95535 1.22330 0.93417 0.84239 0.99784 1.19450 0.92286 0.88972 1.03775 1.21697 1.15042 0.98481 0.86898 1.19553 0.98578 0.88810 0.94945 1.18873 1.40726 1.03639 0.88261 0.89159 1.26729 0.92869 0.94075 1.05434 1.70167 1.31719 1.08050 1.35354 0.85254 0.79660 0.78577 0.76089 1.18338 1.20321 1.18266 1.75067 1.18410 1.20958 1.00756 1.81363 1.22618 1.03449 1.06613 1.49955 1.44905 1.13423 1.06816 1.21831 1.00077 1.00945 0.76413 1.22649 0.97218 1.01094 0.98459 1.21771 0.87907 0.92251 0.92434 0.87772 1.22436 0.97092 1.01877 1.02321 1.86548 1.45364 1.31195 1.75083 0.94103 0.87524 0.93274 0.94416 0.93459 0.89404 0.90140 0.91688 0.88968 0.87720 0.91048 0.91600 0.91415 0.90854 0.91705 0.76190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -11.97 10.70 -148.98 -1.59 -13.57 16 3 C 0.08 2.63 5.92 71.98 0.43 3.05 16 4 C -0.01 -0.18 5.44 29.85 0.16 -0.02 16 5 C -0.09 -3.94 6.37 42.25 0.27 -3.67 16 6 C 0.11 6.40 6.72 39.67 0.27 6.66 16 7 C -0.48 -26.59 9.11 23.43 0.21 -26.38 16 8 H 0.09 4.62 7.30 -2.91 -0.02 4.60 16 9 C 0.02 1.26 5.49 85.18 0.47 1.73 16 10 N -0.82 -48.78 11.92 21.79 0.26 -48.52 16 11 Si 0.98 40.94 29.56 68.60 2.03 42.96 16 12 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 13 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 14 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 15 N -0.28 -17.09 10.56 -52.51 -0.55 -17.65 16 16 N -0.17 -8.84 13.74 37.02 0.51 -8.33 16 17 N -0.36 -15.36 3.63 -331.64 -1.20 -16.56 16 18 C 0.13 3.89 6.05 86.38 0.52 4.41 16 19 C -0.15 -3.83 5.22 30.60 0.16 -3.67 16 20 C 0.12 2.14 3.59 30.60 0.11 2.25 16 21 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 22 C -0.18 -2.73 9.53 71.98 0.69 -2.05 16 23 O -0.57 -10.74 12.87 -148.98 -1.92 -12.66 16 24 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 2.60 7.86 -2.39 -0.02 2.59 16 30 H 0.08 3.00 7.56 -2.39 -0.02 2.99 16 31 H 0.27 14.93 8.30 -92.70 -0.77 14.16 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.10 2.82 7.46 -2.39 -0.02 2.80 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.39 4.96 9.04 -74.06 -0.67 4.29 16 Total: -1.00 -73.61 334.00 2.43 -71.18 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.37 Total: 19.05 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 4.53 Total: -15.90 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -0.99 Total: -91.06 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -3.51 Total: -26.23 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -73.61 2.43 -71.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.901 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds