Wall clock time and date at job start Mon Mar 30 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99592 * 2 1 4 4 H 1.09000 * 109.47131 * 330.00056 * 3 2 1 5 5 C 1.52996 * 109.47123 * 210.00256 * 3 2 1 6 6 C 1.50700 * 109.47095 * 90.00347 * 3 2 1 7 7 C 1.39017 * 126.77101 * 45.10157 * 6 3 2 8 8 C 1.41489 * 126.02404 * 0.04999 * 7 6 3 9 9 H 1.08006 * 119.99866 * 355.10605 * 8 7 6 10 10 C 1.39730 * 120.00148 * 175.10208 * 8 7 6 11 11 N 1.30985 * 120.00212 * 6.02835 * 10 8 7 12 12 Si 1.86809 * 120.00003 * 186.02438 * 10 8 7 13 13 H 1.48498 * 109.46987 * 94.98408 * 12 10 8 14 14 H 1.48500 * 109.47094 * 214.98304 * 12 10 8 15 15 H 1.48497 * 109.47072 * 334.98340 * 12 10 8 16 16 N 1.34847 * 107.95332 * 180.26787 * 7 6 3 17 17 N 1.28660 * 109.63527 * 359.78438 * 16 7 6 18 18 N 1.35014 * 126.77023 * 224.99986 * 6 3 2 19 19 C 1.46497 * 126.49718 * 359.97438 * 18 6 3 20 20 C 1.52999 * 109.47308 * 269.71631 * 19 18 6 21 21 C 1.52998 * 109.46805 * 304.99467 * 20 19 18 22 22 C 1.53004 * 109.47398 * 184.99735 * 20 19 18 23 23 O 1.42895 * 109.47223 * 64.99724 * 20 19 18 24 24 H 1.09000 * 109.47165 * 299.99707 * 1 2 3 25 25 H 1.08994 * 109.47710 * 59.99995 * 1 2 3 26 26 H 1.09006 * 109.47032 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47335 * 300.00254 * 5 3 2 28 28 H 1.08998 * 109.47245 * 59.99762 * 5 3 2 29 29 H 1.08998 * 109.47681 * 180.02562 * 5 3 2 30 30 H 0.96996 * 119.99964 * 179.97438 * 11 10 8 31 31 H 1.09000 * 109.47707 * 149.71409 * 19 18 6 32 32 H 1.09003 * 109.46762 * 29.71448 * 19 18 6 33 33 H 1.09004 * 109.47045 * 180.02562 * 21 20 19 34 34 H 1.08999 * 109.47287 * 299.99882 * 21 20 19 35 35 H 1.09002 * 109.47200 * 60.00689 * 21 20 19 36 36 H 1.08999 * 109.46840 * 299.99763 * 22 20 19 37 37 H 1.08999 * 109.46757 * 59.99526 * 22 20 19 38 38 H 1.08996 * 109.47081 * 179.97438 * 22 20 19 39 39 H 0.96697 * 114.00532 * 60.00236 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 3.3587 1.2634 -0.7213 6 6 2.2145 1.7644 1.4208 7 6 2.7466 1.0200 2.4674 8 6 3.1997 -0.3182 2.3905 9 1 3.0754 -0.8787 1.4757 10 6 3.8080 -0.9146 3.4981 11 7 3.8532 -0.2784 4.6421 12 14 4.5566 -2.6195 3.3473 13 1 6.0085 -2.4989 3.0599 14 1 4.3637 -3.3592 4.6204 15 1 3.8926 -3.3556 2.2416 16 7 2.7504 1.7964 3.5699 17 7 2.2694 2.9551 3.2843 18 7 1.9186 2.9802 1.9279 19 6 1.3360 4.1099 1.1996 20 6 2.4563 4.9706 0.6125 21 6 3.4132 5.3931 1.7290 22 6 1.8537 6.2159 -0.0411 23 8 3.1719 4.2170 -0.3683 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0241 0.5695 -0.2075 28 1 3.2110 0.9315 -1.7489 29 1 3.8023 2.2591 -0.7209 30 1 4.2751 -0.6926 5.4111 31 1 0.7353 4.7113 1.8819 32 1 0.7049 3.7357 0.3934 33 1 4.2112 6.0067 1.3109 34 1 2.8674 5.9680 2.4771 35 1 3.8427 4.5060 2.1946 36 1 1.1720 5.9149 -0.8365 37 1 1.3079 6.7907 0.7071 38 1 2.6519 6.8293 -0.4589 39 1 2.6265 3.9156 -1.1077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:55 Heat of formation + Delta-G solvation = -6.985173 kcal Electronic energy + Delta-G solvation = -22366.015584 eV Core-core repulsion = 19118.157182 eV Total energy + Delta-G solvation = -3247.858401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18029 -38.01193 -37.23136 -33.64508 -32.81502 -32.08019 -30.70926 -28.48412 -27.25269 -26.42744 -25.87948 -24.77221 -22.47881 -20.73281 -20.11537 -19.02098 -17.41208 -16.34943 -15.76107 -15.64176 -15.10910 -14.82814 -14.58701 -14.40998 -14.05261 -13.16353 -12.94470 -12.82520 -12.54305 -12.31259 -12.07113 -11.89820 -11.72167 -11.55048 -11.42351 -11.09949 -11.08491 -10.96645 -10.74132 -10.68883 -10.39366 -10.18189 -9.98269 -9.64388 -9.15689 -9.08937 -8.67639 -8.33965 -7.30177 -6.26298 -4.00854 2.84489 3.23975 3.29209 3.34253 3.56697 4.24462 4.28202 4.39552 4.54141 4.78569 4.89217 5.01036 5.27674 5.40760 5.55842 5.59916 5.64772 5.70593 5.74550 5.84731 5.88194 5.92430 6.07264 6.11088 6.14164 6.18452 6.44722 6.50546 6.63548 6.98999 7.07765 7.23228 7.33649 7.63687 7.74588 7.95682 8.21585 8.70440 8.96023 9.24282 10.29403 10.70890 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.007338 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.315686 B = 3814.997471 C = 4427.789100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.364 6.364 3 C 0.200 3.800 4 H 0.035 0.965 5 C -0.148 4.148 6 C -0.139 4.139 7 C 0.171 3.829 8 C -0.435 4.435 9 H 0.092 0.908 10 C 0.070 3.930 11 N -0.780 5.780 12 Si 0.903 3.097 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.263 1.263 16 N -0.232 5.232 17 N -0.129 5.129 18 N -0.367 5.367 19 C 0.112 3.888 20 C 0.113 3.887 21 C -0.134 4.134 22 C -0.174 4.174 23 O -0.544 6.544 24 H 0.036 0.964 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.269 0.731 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 7.675 -11.147 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.140 3.860 4 H 0.053 0.947 5 C -0.205 4.205 6 C -0.270 4.270 7 C 0.042 3.958 8 C -0.471 4.471 9 H 0.110 0.890 10 C -0.148 4.148 11 N -0.407 5.407 12 Si 0.729 3.271 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.187 1.187 16 N -0.105 5.105 17 N -0.105 5.105 18 N -0.164 5.164 19 C -0.013 4.013 20 C 0.070 3.930 21 C -0.191 4.191 22 C -0.232 4.232 23 O -0.349 6.349 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.517 8.402 -9.162 13.227 hybrid contribution -0.555 -1.060 -1.295 1.763 sum -5.072 7.342 -10.458 13.748 Atomic orbital electron populations 1.22606 0.82762 1.01876 0.98689 1.88033 1.18111 1.27531 1.94447 1.19700 0.94015 0.83267 0.89055 0.94714 1.21960 0.96453 1.03880 0.98239 1.21717 1.19457 0.88149 0.97649 1.18907 0.96707 0.94871 0.85336 1.18748 1.34629 0.94589 0.99113 0.89036 1.25837 0.95309 0.98765 0.94891 1.70042 1.33596 1.36665 1.00369 0.86384 0.79708 0.82747 0.78267 1.20019 1.20762 1.18741 1.75095 1.14478 0.97118 1.23799 1.81453 1.20305 1.18364 0.90369 1.49210 1.48545 1.09159 1.09501 1.22082 0.95206 0.87870 0.96164 1.21656 0.92306 0.89599 0.89393 1.21673 0.98665 1.02597 0.96172 1.22443 1.01425 0.98249 1.01109 1.86704 1.39447 1.73386 1.35400 0.94559 0.95481 0.90318 0.90738 0.93510 0.89930 0.92034 0.89152 0.90603 0.92610 0.91372 0.90559 0.92417 0.91419 0.91412 0.78598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.81 101.05 1.09 1.70 16 2 O -0.36 -7.28 8.73 -35.23 -0.31 -7.59 16 3 C 0.20 3.76 2.65 -27.88 -0.07 3.69 16 4 H 0.03 0.55 6.45 -51.93 -0.34 0.22 16 5 C -0.15 -2.59 9.32 37.16 0.35 -2.25 16 6 C -0.14 -3.20 5.87 -80.90 -0.48 -3.67 16 7 C 0.17 4.77 6.69 -85.01 -0.57 4.20 16 8 C -0.43 -12.21 8.71 -37.79 -0.33 -12.54 16 9 H 0.09 2.49 6.64 -52.48 -0.35 2.15 16 10 C 0.07 1.93 5.49 -17.36 -0.10 1.83 16 11 N -0.78 -22.66 11.95 55.54 0.66 -22.00 16 12 Si 0.90 20.48 29.56 -169.99 -5.03 15.45 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 16 N -0.23 -6.80 10.58 32.05 0.34 -6.46 16 17 N -0.13 -3.30 12.65 60.35 0.76 -2.54 16 18 N -0.37 -7.85 2.90 -56.18 -0.16 -8.02 16 19 C 0.11 1.71 5.41 -4.04 -0.02 1.69 16 20 C 0.11 1.53 1.18 -90.62 -0.11 1.43 16 21 C -0.13 -2.11 8.47 37.16 0.31 -1.80 16 22 C -0.17 -1.68 8.82 37.16 0.33 -1.36 16 23 O -0.54 -7.81 10.14 -35.23 -0.36 -8.17 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.52 7.99 -51.93 -0.42 1.11 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.39 5.29 -51.93 -0.27 1.12 16 30 H 0.27 7.21 8.30 -40.82 -0.34 6.88 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 0.98 7.02 -51.93 -0.36 0.62 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.57 6.73 -51.93 -0.35 1.22 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.37 3.99 8.49 45.56 0.39 4.38 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -33.72 319.52 -3.92 -37.64 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.06 Total: 3.93 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 0.41 Total: -7.08 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 1.60 Total: -39.01 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.66 Total: -15.75 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.72 -3.92 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.656 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds