Wall clock time and date at job start Mon Mar 30 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99592 * 2 1 4 4 H 1.09000 * 109.47131 * 330.00056 * 3 2 1 5 5 C 1.52996 * 109.47123 * 210.00256 * 3 2 1 6 6 C 1.50700 * 109.47095 * 90.00347 * 3 2 1 7 7 C 1.39017 * 126.77101 * 45.10157 * 6 3 2 8 8 C 1.41489 * 126.02404 * 0.04999 * 7 6 3 9 9 H 1.08006 * 119.99866 * 355.10605 * 8 7 6 10 10 C 1.39730 * 120.00148 * 175.10208 * 8 7 6 11 11 N 1.30985 * 120.00212 * 6.02835 * 10 8 7 12 12 Si 1.86809 * 120.00003 * 186.02438 * 10 8 7 13 13 H 1.48498 * 109.46987 * 94.98408 * 12 10 8 14 14 H 1.48500 * 109.47094 * 214.98304 * 12 10 8 15 15 H 1.48497 * 109.47072 * 334.98340 * 12 10 8 16 16 N 1.34847 * 107.95332 * 180.26787 * 7 6 3 17 17 N 1.28660 * 109.63527 * 359.78438 * 16 7 6 18 18 N 1.35014 * 126.77023 * 224.99986 * 6 3 2 19 19 C 1.46497 * 126.49718 * 359.97438 * 18 6 3 20 20 C 1.52999 * 109.47308 * 269.71631 * 19 18 6 21 21 C 1.52998 * 109.46805 * 304.99467 * 20 19 18 22 22 C 1.53004 * 109.47398 * 184.99735 * 20 19 18 23 23 O 1.42895 * 109.47223 * 64.99724 * 20 19 18 24 24 H 1.09000 * 109.47165 * 299.99707 * 1 2 3 25 25 H 1.08994 * 109.47710 * 59.99995 * 1 2 3 26 26 H 1.09006 * 109.47032 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47335 * 300.00254 * 5 3 2 28 28 H 1.08998 * 109.47245 * 59.99762 * 5 3 2 29 29 H 1.08998 * 109.47681 * 180.02562 * 5 3 2 30 30 H 0.96996 * 119.99964 * 179.97438 * 11 10 8 31 31 H 1.09000 * 109.47707 * 149.71409 * 19 18 6 32 32 H 1.09003 * 109.46762 * 29.71448 * 19 18 6 33 33 H 1.09004 * 109.47045 * 180.02562 * 21 20 19 34 34 H 1.08999 * 109.47287 * 299.99882 * 21 20 19 35 35 H 1.09002 * 109.47200 * 60.00689 * 21 20 19 36 36 H 1.08999 * 109.46840 * 299.99763 * 22 20 19 37 37 H 1.08999 * 109.46757 * 59.99526 * 22 20 19 38 38 H 1.08996 * 109.47081 * 179.97438 * 22 20 19 39 39 H 0.96697 * 114.00532 * 60.00236 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 3.3587 1.2634 -0.7213 6 6 2.2145 1.7644 1.4208 7 6 2.7466 1.0200 2.4674 8 6 3.1997 -0.3182 2.3905 9 1 3.0754 -0.8787 1.4757 10 6 3.8080 -0.9146 3.4981 11 7 3.8532 -0.2784 4.6421 12 14 4.5566 -2.6195 3.3473 13 1 6.0085 -2.4989 3.0599 14 1 4.3637 -3.3592 4.6204 15 1 3.8926 -3.3556 2.2416 16 7 2.7504 1.7964 3.5699 17 7 2.2694 2.9551 3.2843 18 7 1.9186 2.9802 1.9279 19 6 1.3360 4.1099 1.1996 20 6 2.4563 4.9706 0.6125 21 6 3.4132 5.3931 1.7290 22 6 1.8537 6.2159 -0.0411 23 8 3.1719 4.2170 -0.3683 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0241 0.5695 -0.2075 28 1 3.2110 0.9315 -1.7489 29 1 3.8023 2.2591 -0.7209 30 1 4.2751 -0.6926 5.4111 31 1 0.7353 4.7113 1.8819 32 1 0.7049 3.7357 0.3934 33 1 4.2112 6.0067 1.3109 34 1 2.8674 5.9680 2.4771 35 1 3.8427 4.5060 2.1946 36 1 1.1720 5.9149 -0.8365 37 1 1.3079 6.7907 0.7071 38 1 2.6519 6.8293 -0.4589 39 1 2.6265 3.9156 -1.1077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:54 Heat of formation + Delta-G solvation = -33.761104 kcal Electronic energy + Delta-G solvation = -22367.176675 eV Core-core repulsion = 19118.157182 eV Total energy + Delta-G solvation = -3249.019493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97934 -39.23703 -38.73889 -35.42541 -34.42784 -33.56181 -32.20335 -30.31056 -28.34121 -27.91251 -27.19226 -26.60679 -24.10678 -22.37459 -21.59946 -20.62910 -19.17533 -17.79459 -17.31894 -17.07430 -16.56886 -16.41193 -15.91683 -15.76367 -15.66111 -14.77031 -14.61468 -14.20216 -13.76550 -13.50276 -13.27583 -13.16992 -13.04917 -12.92210 -12.88237 -12.74021 -12.71527 -12.54819 -12.27046 -12.03395 -11.95102 -11.73033 -11.51947 -11.29981 -10.97993 -10.79249 -10.41773 -10.08000 -9.26950 -8.25083 -6.07352 1.04035 1.42646 1.43881 1.57685 1.99344 2.36476 2.39870 3.07000 3.30277 3.60675 3.65601 3.70012 3.96040 4.04031 4.13340 4.26835 4.45221 4.50340 4.56458 4.70742 4.72622 4.82098 4.89439 4.91600 4.93065 4.98968 5.10738 5.19227 5.24871 5.31300 5.34562 5.50002 5.60874 5.65308 6.42032 6.55857 6.60605 6.87094 6.98876 7.19976 8.37167 8.74939 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.007338 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.315686 B = 3814.997471 C = 4427.789100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.197 3.803 4 H 0.082 0.918 5 C -0.141 4.141 6 C -0.100 4.100 7 C 0.122 3.878 8 C -0.461 4.461 9 H 0.091 0.909 10 C 0.017 3.983 11 N -0.831 5.831 12 Si 0.977 3.023 13 H -0.270 1.270 14 H -0.277 1.277 15 H -0.254 1.254 16 N -0.291 5.291 17 N -0.164 5.164 18 N -0.345 5.345 19 C 0.092 3.908 20 C 0.120 3.880 21 C -0.134 4.134 22 C -0.162 4.162 23 O -0.563 6.563 24 H 0.015 0.985 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.269 0.731 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.021 0.979 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 8.674 -14.869 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.137 3.863 4 H 0.099 0.901 5 C -0.199 4.199 6 C -0.235 4.235 7 C -0.011 4.011 8 C -0.498 4.498 9 H 0.109 0.891 10 C -0.196 4.196 11 N -0.461 5.461 12 Si 0.800 3.200 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.178 1.178 16 N -0.161 5.161 17 N -0.139 5.139 18 N -0.140 5.140 19 C -0.030 4.030 20 C 0.078 3.922 21 C -0.192 4.192 22 C -0.220 4.220 23 O -0.371 6.371 24 H 0.034 0.966 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.139 9.471 -12.891 17.134 hybrid contribution -0.210 -1.166 -0.364 1.239 sum -6.349 8.306 -13.255 16.881 Atomic orbital electron populations 1.22830 0.80798 1.03239 0.99597 1.88015 1.20383 1.27947 1.94348 1.20016 0.95832 0.84058 0.86415 0.90066 1.21910 0.94853 1.03420 0.99668 1.22569 1.14480 0.87650 0.98830 1.19449 0.99024 0.95883 0.86727 1.18943 1.36074 0.95345 0.99423 0.89114 1.26730 0.95626 1.02892 0.94303 1.70201 1.35830 1.38773 1.01253 0.85266 0.78737 0.77624 0.78420 1.19540 1.20267 1.17774 1.75034 1.16918 0.98446 1.25659 1.81314 1.22471 1.17638 0.92524 1.49669 1.45456 1.10176 1.08652 1.22804 0.96516 0.86597 0.97125 1.21578 0.90809 0.90925 0.88844 1.21667 0.99753 1.00449 0.97320 1.22336 1.01960 0.95850 1.01845 1.86679 1.40559 1.73789 1.36119 0.96595 0.91289 0.89095 0.94487 0.89745 0.89310 0.92171 0.87620 0.86780 0.91480 0.90503 0.96004 0.89595 0.90286 0.90908 0.76506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 10.81 113.37 1.23 2.15 16 2 O -0.39 -14.68 8.73 -148.98 -1.30 -15.98 16 3 C 0.20 6.85 2.65 29.85 0.08 6.93 16 4 H 0.08 2.09 6.45 -2.39 -0.02 2.07 16 5 C -0.14 -4.59 9.32 71.98 0.67 -3.92 16 6 C -0.10 -4.56 5.87 42.26 0.25 -4.31 16 7 C 0.12 7.05 6.69 39.67 0.27 7.31 16 8 C -0.46 -26.98 8.71 23.43 0.20 -26.78 16 9 H 0.09 5.10 6.64 -2.91 -0.02 5.08 16 10 C 0.02 0.98 5.49 85.18 0.47 1.45 16 11 N -0.83 -51.35 11.95 21.79 0.26 -51.09 16 12 Si 0.98 43.82 29.56 68.60 2.03 45.84 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.25 -10.82 7.11 99.48 0.71 -10.12 16 16 N -0.29 -18.01 10.58 -52.51 -0.56 -18.57 16 17 N -0.16 -8.76 12.65 37.02 0.47 -8.29 16 18 N -0.34 -14.51 2.90 -331.64 -0.96 -15.47 16 19 C 0.09 2.49 5.41 86.38 0.47 2.96 16 20 C 0.12 2.88 1.18 -10.79 -0.01 2.86 16 21 C -0.13 -4.15 8.47 71.98 0.61 -3.54 16 22 C -0.16 -2.31 8.82 71.98 0.63 -1.68 16 23 O -0.56 -14.15 10.14 -148.98 -1.51 -15.66 16 24 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 26 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.04 1.48 7.99 -2.39 -0.02 1.46 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.76 5.29 -2.39 -0.01 2.75 16 30 H 0.27 15.36 8.30 -92.71 -0.77 14.59 16 31 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.11 2.28 7.02 -2.39 -0.02 2.27 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.02 0.89 6.73 -2.39 -0.02 0.88 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.39 6.29 8.49 -74.06 -0.63 5.66 16 Total: -1.00 -81.47 319.52 3.72 -77.75 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.43 Total: 18.02 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 4.86 Total: -16.57 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -0.79 Total: -93.42 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -2.81 Total: -31.64 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -81.47 3.72 -77.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.993 kcal (2) G-P(sol) polarization free energy of solvation -81.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds