Wall clock time and date at job start Mon Mar 30 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00240 * 2 1 4 4 H 1.08992 * 109.46818 * 330.00183 * 3 2 1 5 5 C 1.53002 * 109.47108 * 209.99962 * 3 2 1 6 6 C 1.50699 * 109.46899 * 90.00092 * 3 2 1 7 7 C 1.39013 * 126.77418 * 45.02713 * 6 3 2 8 8 C 1.41495 * 126.01941 * 359.97438 * 7 6 3 9 9 H 1.07999 * 120.00044 * 354.85342 * 8 7 6 10 10 C 1.39746 * 119.99765 * 174.84709 * 8 7 6 11 11 N 1.30985 * 119.99826 * 6.02522 * 10 8 7 12 12 Si 1.86797 * 119.99885 * 186.02851 * 10 8 7 13 13 H 1.48497 * 109.47159 * 94.97725 * 12 10 8 14 14 H 1.48502 * 109.46983 * 214.98354 * 12 10 8 15 15 H 1.48508 * 109.46738 * 334.97934 * 12 10 8 16 16 N 1.34840 * 107.95729 * 179.97438 * 7 6 3 17 17 N 1.28662 * 109.63806 * 0.02562 * 16 7 6 18 18 N 1.35016 * 126.77053 * 225.02166 * 6 3 2 19 19 C 1.46501 * 126.49305 * 0.02562 * 18 6 3 20 20 C 1.52998 * 109.47262 * 270.02193 * 19 18 6 21 21 C 1.53003 * 109.47320 * 179.97438 * 20 19 18 22 22 C 1.52994 * 109.46880 * 179.97438 * 21 20 19 23 23 O 1.42907 * 109.46961 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46969 * 300.00257 * 1 2 3 26 26 H 1.08998 * 109.47270 * 59.99898 * 1 2 3 27 27 H 1.09001 * 109.47438 * 300.00051 * 5 3 2 28 28 H 1.09001 * 109.46736 * 60.00138 * 5 3 2 29 29 H 1.09002 * 109.47105 * 179.97438 * 5 3 2 30 30 H 0.97002 * 119.99728 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.47272 * 30.02073 * 19 18 6 32 32 H 1.09005 * 109.47416 * 150.02243 * 19 18 6 33 33 H 1.09003 * 109.46879 * 300.00120 * 20 19 18 34 34 H 1.08998 * 109.46929 * 59.99316 * 20 19 18 35 35 H 1.08993 * 109.46859 * 300.00166 * 21 20 19 36 36 H 1.09000 * 109.46825 * 60.00042 * 21 20 19 37 37 H 1.08993 * 109.47726 * 299.99900 * 22 21 20 38 38 H 1.09000 * 109.47141 * 60.00501 * 22 21 20 39 39 H 0.96697 * 114.00113 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 3.3589 1.2632 -0.7213 6 6 2.2146 1.7643 1.4208 7 6 2.7452 1.0194 2.4677 8 6 3.1951 -0.3199 2.3916 9 1 3.0656 -0.8820 1.4786 10 6 3.8072 -0.9153 3.4979 11 7 3.8589 -0.2767 4.6403 12 14 4.5517 -2.6219 3.3473 13 1 6.0025 -2.5049 3.0531 14 1 4.3629 -3.3586 4.6228 15 1 3.8812 -3.3590 2.2461 16 7 2.7556 1.7981 3.5685 17 7 2.2752 2.9570 3.2829 18 7 1.9185 2.9800 1.9280 19 6 1.3345 4.1092 1.1999 20 6 2.4537 4.9663 0.6053 21 6 1.8438 6.1452 -0.1557 22 6 2.9631 7.0026 -0.7497 23 8 2.3935 8.1041 -1.4600 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0242 0.5693 -0.2075 28 1 3.2111 0.9313 -1.7489 29 1 3.8021 2.2591 -0.7216 30 1 4.2834 -0.6901 5.4083 31 1 0.6986 3.7345 0.3978 32 1 0.7385 4.7135 1.8839 33 1 3.0896 5.3410 1.4074 34 1 3.0497 4.3620 -0.0786 35 1 1.2082 5.7702 -0.9578 36 1 1.2476 6.7496 0.5280 37 1 3.5984 7.3777 0.0526 38 1 3.5597 6.3985 -1.4333 39 1 3.0466 8.6914 -1.8644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:00 Heat of formation + Delta-G solvation = -18.984442 kcal Electronic energy + Delta-G solvation = -21254.202054 eV Core-core repulsion = 18005.823325 eV Total energy + Delta-G solvation = -3248.378729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07248 -37.41797 -37.25638 -35.19951 -33.25926 -32.15647 -31.15991 -28.55077 -27.76557 -25.90596 -25.07986 -23.46680 -22.51871 -21.31502 -20.22603 -19.00762 -17.47865 -17.16244 -16.09060 -15.84836 -15.54489 -14.72638 -14.70062 -14.37500 -14.14318 -14.05430 -13.56368 -12.90638 -12.74710 -12.15008 -12.04593 -11.99741 -11.79874 -11.65680 -11.18383 -11.16551 -11.06146 -11.03848 -10.80572 -10.71482 -10.40664 -10.15526 -10.13414 -9.69513 -9.23698 -9.13597 -8.72287 -8.44951 -7.37909 -6.31708 -4.07345 2.78528 3.20475 3.25940 3.31023 3.51968 4.09108 4.20568 4.34609 4.46512 4.78234 4.91210 5.09252 5.18274 5.33989 5.44328 5.53922 5.56133 5.59685 5.63462 5.70577 5.73301 5.85609 5.87789 6.02915 6.10894 6.12346 6.23426 6.32218 6.37829 6.81657 6.98934 7.19037 7.29578 7.39413 7.58241 7.91251 8.17993 8.65224 8.90149 9.18378 10.23671 10.65238 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.005161 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.173414 B = 5424.117633 C = 5916.675447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.195 3.805 4 H 0.042 0.958 5 C -0.139 4.139 6 C -0.156 4.156 7 C 0.173 3.827 8 C -0.435 4.435 9 H 0.093 0.907 10 C 0.070 3.930 11 N -0.778 5.778 12 Si 0.904 3.096 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.263 1.263 16 N -0.232 5.232 17 N -0.125 5.125 18 N -0.376 5.376 19 C 0.140 3.860 20 C -0.132 4.132 21 C -0.116 4.116 22 C 0.075 3.925 23 O -0.577 6.577 24 H 0.079 0.921 25 H 0.037 0.963 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.270 0.730 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 8.137 -11.970 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.135 3.865 4 H 0.060 0.940 5 C -0.196 4.196 6 C -0.286 4.286 7 C 0.044 3.956 8 C -0.470 4.470 9 H 0.111 0.889 10 C -0.149 4.149 11 N -0.404 5.404 12 Si 0.730 3.270 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.187 1.187 16 N -0.105 5.105 17 N -0.102 5.102 18 N -0.174 5.174 19 C 0.016 3.984 20 C -0.171 4.171 21 C -0.154 4.154 22 C -0.002 4.002 23 O -0.383 6.383 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.949 8.455 -10.201 13.574 hybrid contribution 0.596 -0.714 -1.074 1.421 sum -2.352 7.742 -11.275 13.878 Atomic orbital electron populations 1.22620 0.82547 1.01923 0.98861 1.88011 1.18309 1.27241 1.94459 1.19721 0.94059 0.83730 0.88978 0.94034 1.21779 0.96657 1.02262 0.98943 1.21795 1.20437 0.88525 0.97873 1.18948 0.96502 0.94840 0.85295 1.18779 1.34480 0.94421 0.99348 0.88906 1.25864 0.95270 0.98870 0.94855 1.70045 1.33183 1.36702 1.00478 0.86364 0.79661 0.82624 0.78364 1.19984 1.20687 1.18669 1.75115 1.14549 0.97081 1.23790 1.81464 1.19676 1.18425 0.90633 1.49419 1.48764 1.09573 1.09667 1.21285 0.94877 0.86816 0.95414 1.21914 0.98844 0.96051 1.00306 1.21430 0.98021 0.95927 1.00017 1.22198 0.95602 0.87648 0.94771 1.86464 1.38209 1.40667 1.72945 0.90252 0.94451 0.95340 0.90337 0.92955 0.92311 0.91924 0.90574 0.89729 0.90815 0.91188 0.91116 0.90971 0.93501 0.93532 0.77531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.81 101.05 1.09 1.70 16 2 O -0.36 -7.24 8.72 -35.23 -0.31 -7.55 16 3 C 0.20 3.70 2.92 -27.88 -0.08 3.62 16 4 H 0.04 0.68 6.53 -51.93 -0.34 0.34 16 5 C -0.14 -2.37 9.54 37.16 0.35 -2.01 16 6 C -0.16 -3.61 6.04 -80.90 -0.49 -4.10 16 7 C 0.17 4.80 6.69 -85.02 -0.57 4.23 16 8 C -0.43 -12.02 8.73 -37.78 -0.33 -12.35 16 9 H 0.09 2.48 6.62 -52.49 -0.35 2.14 16 10 C 0.07 1.90 5.49 -17.35 -0.10 1.80 16 11 N -0.78 -22.32 11.95 55.54 0.66 -21.66 16 12 Si 0.90 20.10 29.56 -169.99 -5.03 15.07 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 N -0.23 -6.81 10.58 32.05 0.34 -6.47 16 17 N -0.13 -3.28 13.74 60.35 0.83 -2.45 16 18 N -0.38 -8.19 3.63 -56.17 -0.20 -8.40 16 19 C 0.14 2.19 6.26 -4.04 -0.03 2.17 16 20 C -0.13 -1.76 5.54 -26.73 -0.15 -1.90 16 21 C -0.12 -1.26 5.58 -26.73 -0.15 -1.41 16 22 C 0.08 0.75 7.05 37.15 0.26 1.01 16 23 O -0.58 -5.77 13.66 -35.23 -0.48 -6.25 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.08 1.52 8.01 -51.93 -0.42 1.11 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.92 7.86 -51.93 -0.41 0.51 16 30 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 31 H 0.08 1.04 7.03 -51.93 -0.37 0.68 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.95 7.86 -51.93 -0.41 0.55 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 2.00 9.12 45.56 0.42 2.41 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -34.08 330.50 -4.61 -38.69 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.23 Total: 1.27 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.18 Total: -7.24 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 1.63 Total: -38.97 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.79 Total: -13.81 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.08 -4.61 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.710 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds