Wall clock time and date at job start Mon Mar 30 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00240 * 2 1 4 4 H 1.08992 * 109.46818 * 330.00183 * 3 2 1 5 5 C 1.53002 * 109.47108 * 209.99962 * 3 2 1 6 6 C 1.50699 * 109.46899 * 90.00092 * 3 2 1 7 7 C 1.39013 * 126.77418 * 45.02713 * 6 3 2 8 8 C 1.41495 * 126.01941 * 359.97438 * 7 6 3 9 9 H 1.07999 * 120.00044 * 354.85342 * 8 7 6 10 10 C 1.39746 * 119.99765 * 174.84709 * 8 7 6 11 11 N 1.30985 * 119.99826 * 6.02522 * 10 8 7 12 12 Si 1.86797 * 119.99885 * 186.02851 * 10 8 7 13 13 H 1.48497 * 109.47159 * 94.97725 * 12 10 8 14 14 H 1.48502 * 109.46983 * 214.98354 * 12 10 8 15 15 H 1.48508 * 109.46738 * 334.97934 * 12 10 8 16 16 N 1.34840 * 107.95729 * 179.97438 * 7 6 3 17 17 N 1.28662 * 109.63806 * 0.02562 * 16 7 6 18 18 N 1.35016 * 126.77053 * 225.02166 * 6 3 2 19 19 C 1.46501 * 126.49305 * 0.02562 * 18 6 3 20 20 C 1.52998 * 109.47262 * 270.02193 * 19 18 6 21 21 C 1.53003 * 109.47320 * 179.97438 * 20 19 18 22 22 C 1.52994 * 109.46880 * 179.97438 * 21 20 19 23 23 O 1.42907 * 109.46961 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46969 * 300.00257 * 1 2 3 26 26 H 1.08998 * 109.47270 * 59.99898 * 1 2 3 27 27 H 1.09001 * 109.47438 * 300.00051 * 5 3 2 28 28 H 1.09001 * 109.46736 * 60.00138 * 5 3 2 29 29 H 1.09002 * 109.47105 * 179.97438 * 5 3 2 30 30 H 0.97002 * 119.99728 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.47272 * 30.02073 * 19 18 6 32 32 H 1.09005 * 109.47416 * 150.02243 * 19 18 6 33 33 H 1.09003 * 109.46879 * 300.00120 * 20 19 18 34 34 H 1.08998 * 109.46929 * 59.99316 * 20 19 18 35 35 H 1.08993 * 109.46859 * 300.00166 * 21 20 19 36 36 H 1.09000 * 109.46825 * 60.00042 * 21 20 19 37 37 H 1.08993 * 109.47726 * 299.99900 * 22 21 20 38 38 H 1.09000 * 109.47141 * 60.00501 * 22 21 20 39 39 H 0.96697 * 114.00113 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 3.3589 1.2632 -0.7213 6 6 2.2146 1.7643 1.4208 7 6 2.7452 1.0194 2.4677 8 6 3.1951 -0.3199 2.3916 9 1 3.0656 -0.8820 1.4786 10 6 3.8072 -0.9153 3.4979 11 7 3.8589 -0.2767 4.6403 12 14 4.5517 -2.6219 3.3473 13 1 6.0025 -2.5049 3.0531 14 1 4.3629 -3.3586 4.6228 15 1 3.8812 -3.3590 2.2461 16 7 2.7556 1.7981 3.5685 17 7 2.2752 2.9570 3.2829 18 7 1.9185 2.9800 1.9280 19 6 1.3345 4.1092 1.1999 20 6 2.4537 4.9663 0.6053 21 6 1.8438 6.1452 -0.1557 22 6 2.9631 7.0026 -0.7497 23 8 2.3935 8.1041 -1.4600 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0242 0.5693 -0.2075 28 1 3.2111 0.9313 -1.7489 29 1 3.8021 2.2591 -0.7216 30 1 4.2834 -0.6901 5.4083 31 1 0.6986 3.7345 0.3978 32 1 0.7385 4.7135 1.8839 33 1 3.0896 5.3410 1.4074 34 1 3.0497 4.3620 -0.0786 35 1 1.2082 5.7702 -0.9578 36 1 1.2476 6.7496 0.5280 37 1 3.5984 7.3777 0.0526 38 1 3.5597 6.3985 -1.4333 39 1 3.0466 8.6914 -1.8644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:59 Heat of formation + Delta-G solvation = -45.824736 kcal Electronic energy + Delta-G solvation = -21255.365937 eV Core-core repulsion = 18005.823325 eV Total energy + Delta-G solvation = -3249.542611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94424 -38.77211 -38.23609 -36.48484 -35.11714 -33.65327 -32.68357 -30.37256 -29.06391 -27.23148 -26.91730 -24.77192 -24.09863 -22.31971 -22.06206 -20.67826 -19.02760 -18.22328 -17.45647 -17.30978 -16.80026 -16.53459 -16.21826 -15.84468 -15.53069 -15.16138 -14.86829 -14.53387 -14.20002 -13.40563 -13.38103 -13.30342 -13.08094 -13.03183 -12.84130 -12.75557 -12.66745 -12.33902 -12.09694 -11.98279 -11.86309 -11.68630 -11.55985 -11.13041 -10.87819 -10.84295 -10.45492 -10.29219 -9.35288 -8.27592 -6.11755 0.95777 1.44248 1.44320 1.59250 1.94173 2.34355 2.37678 3.05275 3.29223 3.58524 3.71308 3.93522 3.97253 4.05254 4.12667 4.28963 4.40780 4.45771 4.48656 4.55001 4.58796 4.66660 4.74520 4.82223 4.87846 4.93785 4.96950 5.13296 5.14450 5.26949 5.28032 5.45771 5.47836 5.61246 6.37556 6.51053 6.58535 6.88998 6.94348 7.16670 8.30294 8.72140 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.005161 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.173414 B = 5424.117633 C = 5916.675447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.191 3.809 4 H 0.081 0.919 5 C -0.135 4.135 6 C -0.117 4.117 7 C 0.127 3.873 8 C -0.460 4.460 9 H 0.094 0.906 10 C 0.019 3.981 11 N -0.829 5.829 12 Si 0.979 3.021 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.254 1.254 16 N -0.288 5.288 17 N -0.166 5.166 18 N -0.356 5.356 19 C 0.123 3.877 20 C -0.119 4.119 21 C -0.108 4.108 22 C 0.075 3.925 23 O -0.593 6.593 24 H 0.093 0.907 25 H 0.016 0.984 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.270 0.730 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 8.599 -15.393 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.130 3.870 4 H 0.099 0.901 5 C -0.193 4.193 6 C -0.252 4.252 7 C -0.005 4.005 8 C -0.496 4.496 9 H 0.112 0.888 10 C -0.195 4.195 11 N -0.457 5.457 12 Si 0.801 3.199 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.177 1.177 16 N -0.158 5.158 17 N -0.142 5.142 18 N -0.152 5.152 19 C 0.002 3.998 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.002 4.002 23 O -0.402 6.402 24 H 0.111 0.889 25 H 0.034 0.966 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.730 9.002 -13.625 16.751 hybrid contribution 0.668 -0.653 -0.238 0.964 sum -3.062 8.349 -13.863 16.471 Atomic orbital electron populations 1.22837 0.80724 1.03317 0.99594 1.87997 1.20427 1.27585 1.94339 1.20075 0.96111 0.84409 0.86358 0.90120 1.21768 0.94797 1.02459 1.00235 1.22668 1.15484 0.87930 0.99111 1.19493 0.98637 0.95864 0.86493 1.18984 1.35849 0.95023 0.99768 0.88774 1.26765 0.95481 1.03007 0.94212 1.70200 1.35295 1.38852 1.01401 0.85234 0.78817 0.77384 0.78442 1.19294 1.20362 1.17720 1.75061 1.16883 0.98301 1.25571 1.81343 1.22168 1.17957 0.92729 1.49921 1.45812 1.10646 1.08854 1.21906 0.96168 0.85609 0.96133 1.21747 0.97642 0.96577 0.99822 1.21329 0.98346 0.94929 1.00003 1.22146 0.95128 0.87847 0.95125 1.86400 1.39625 1.41066 1.73118 0.88857 0.96558 0.91475 0.93391 0.89421 0.90970 0.91991 0.87304 0.88656 0.92698 0.90981 0.89878 0.91039 0.93476 0.92468 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 10.81 113.37 1.23 2.16 16 2 O -0.39 -14.49 8.72 -148.98 -1.30 -15.79 16 3 C 0.19 6.67 2.92 29.85 0.09 6.76 16 4 H 0.08 2.22 6.53 -2.39 -0.02 2.20 16 5 C -0.13 -4.20 9.54 71.98 0.69 -3.52 16 6 C -0.12 -5.33 6.04 42.25 0.26 -5.08 16 7 C 0.13 7.25 6.69 39.67 0.27 7.52 16 8 C -0.46 -26.21 8.73 23.44 0.20 -26.01 16 9 H 0.09 5.13 6.62 -2.91 -0.02 5.11 16 10 C 0.02 1.04 5.49 85.18 0.47 1.51 16 11 N -0.83 -50.07 11.95 21.80 0.26 -49.81 16 12 Si 0.98 42.49 29.56 68.60 2.03 44.52 16 13 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 16 N -0.29 -17.68 10.58 -52.52 -0.56 -18.23 16 17 N -0.17 -8.97 13.74 37.02 0.51 -8.46 16 18 N -0.36 -15.25 3.63 -331.63 -1.20 -16.46 16 19 C 0.12 3.53 6.26 86.38 0.54 4.07 16 20 C -0.12 -2.86 5.54 30.59 0.17 -2.69 16 21 C -0.11 -1.99 5.58 30.59 0.17 -1.82 16 22 C 0.08 1.27 7.05 71.98 0.51 1.77 16 23 O -0.59 -10.10 13.66 -148.98 -2.04 -12.13 16 24 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 27 H 0.05 1.80 8.01 -2.39 -0.02 1.78 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 2.02 7.86 -2.39 -0.02 2.00 16 30 H 0.27 15.09 8.30 -92.71 -0.77 14.32 16 31 H 0.11 2.47 7.03 -2.39 -0.02 2.45 16 32 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.73 7.86 -2.39 -0.02 1.71 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.40 3.08 9.12 -74.06 -0.68 2.40 16 Total: -1.00 -78.80 330.50 2.66 -76.14 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.37 Total: 15.56 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.58 Total: -15.33 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -0.99 Total: -92.97 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -3.33 Total: -27.92 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -78.80 2.66 -76.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.318 kcal (2) G-P(sol) polarization free energy of solvation -78.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds