Wall clock time and date at job start Mon Mar 30 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48501 * 109.46889 * 270.00027 * 3 2 1 5 5 H 1.48495 * 109.46882 * 30.00078 * 3 2 1 6 6 H 1.48505 * 109.46816 * 150.00061 * 3 2 1 7 7 C 1.37883 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00226 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47513 * 180.02562 * 9 7 2 11 11 C 1.42900 * 114.00033 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46676 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47254 * 65.00090 * 12 11 10 14 14 C 1.47846 * 110.99547 * 290.12325 * 13 12 11 15 15 C 1.54915 * 104.79538 * 213.63497 * 14 13 12 16 16 C 1.55138 * 101.64918 * 37.06908 * 15 14 13 17 17 H 1.09005 * 110.70206 * 82.73348 * 16 15 14 18 18 C 1.53002 * 110.70343 * 205.96119 * 16 15 14 19 19 H 1.09000 * 110.74889 * 55.62676 * 18 16 15 20 20 C 1.55306 * 110.84665 * 179.31638 * 18 16 15 21 21 C 1.54949 * 100.94121 * 152.32608 * 20 18 16 22 22 O 1.43647 * 105.13450 * 323.55600 * 21 20 18 23 23 C 1.43233 * 109.97001 * 24.42801 * 22 21 20 24 24 C 1.47437 * 111.00223 * 169.27923 * 13 12 11 25 25 H 0.96998 * 119.99493 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47368 * 59.99972 * 9 7 2 27 27 H 1.08996 * 109.47071 * 300.00035 * 9 7 2 28 28 H 1.08994 * 109.47275 * 60.00074 * 11 10 9 29 29 H 1.08997 * 109.47097 * 299.99522 * 11 10 9 30 30 H 1.09002 * 109.47270 * 304.99810 * 12 11 10 31 31 H 1.09003 * 109.46878 * 184.99450 * 12 11 10 32 32 H 1.08995 * 110.38030 * 332.46412 * 14 13 12 33 33 H 1.09000 * 110.37255 * 94.81067 * 14 13 12 34 34 H 1.08995 * 110.99221 * 155.16374 * 15 14 13 35 35 H 1.09001 * 110.98790 * 278.98277 * 15 14 13 36 36 H 1.09002 * 111.12864 * 270.24640 * 20 18 16 37 37 H 1.09001 * 111.12413 * 34.40310 * 20 18 16 38 38 H 1.09003 * 110.30408 * 204.64176 * 21 20 18 39 39 H 1.08998 * 110.38981 * 82.51721 * 21 20 18 40 40 H 1.08998 * 109.82966 * 238.77153 * 23 22 21 41 41 H 1.09006 * 109.83256 * 117.80377 * 23 22 21 42 42 H 1.08998 * 109.89349 * 242.66131 * 24 13 12 43 43 H 1.08998 * 109.88725 * 3.69037 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1795 -3.5854 -0.0015 11 6 1.5648 -4.8754 -0.0031 12 6 2.6478 -5.9563 -0.0033 13 7 3.4070 -5.8891 1.2525 14 6 4.2411 -4.6695 1.3026 15 6 5.5099 -5.0899 2.0858 16 6 5.7250 -6.5401 1.5784 17 1 6.2540 -6.5404 0.6253 18 6 6.4802 -7.3705 2.6182 19 1 5.9619 -7.3529 3.5769 20 6 6.6824 -8.8278 2.1209 21 6 7.9790 -9.2184 2.8739 22 8 8.7757 -8.0233 2.8936 23 6 7.9332 -6.8716 2.7699 24 6 4.2843 -7.0644 1.4032 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 0.9457 -4.9818 -0.8938 29 1 0.9438 -4.9831 0.8861 30 1 3.3220 -5.7950 -0.8446 31 1 2.1818 -6.9375 -0.0941 32 1 4.5060 -4.3491 0.2950 33 1 3.7167 -3.8724 1.8297 34 1 6.3573 -4.4555 1.8259 35 1 5.3282 -5.0751 3.1604 36 1 5.8485 -9.4637 2.4184 37 1 6.8308 -8.8574 1.0414 38 1 8.5014 -10.0127 2.3407 39 1 7.7468 -9.5352 3.8907 40 1 8.2204 -6.2962 1.8898 41 1 8.0202 -6.2521 3.6626 42 1 3.9888 -7.6376 2.2820 43 1 4.2208 -7.6910 0.5135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339050284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:08 Heat of formation + Delta-G solvation = -100.287347 kcal Electronic energy + Delta-G solvation = -21028.938618 eV Core-core repulsion = 17880.574674 eV Total energy + Delta-G solvation = -3148.363944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.08910 -38.53481 -36.53538 -33.85843 -32.66878 -31.31906 -29.55046 -28.67942 -27.40372 -26.41600 -22.89570 -22.42544 -22.20215 -21.63220 -20.36290 -20.05075 -16.94933 -16.48134 -16.34443 -15.80824 -15.58694 -15.31282 -14.73167 -14.40515 -14.19939 -13.66187 -13.48273 -13.44157 -13.03630 -12.91621 -12.39289 -12.36199 -11.95779 -11.73427 -11.61208 -11.34117 -11.18904 -11.07614 -10.80663 -10.76209 -10.68021 -10.56135 -10.44690 -10.36609 -9.93028 -9.75430 -9.08351 -8.79661 -8.14600 -8.02499 -6.10423 -4.12025 3.29902 3.35109 3.39985 3.64586 4.10956 4.22225 4.35061 4.38572 4.58237 4.80560 4.89598 4.94002 4.94728 5.04671 5.20898 5.26144 5.35362 5.40699 5.48409 5.51148 5.53497 5.60445 5.62964 5.69653 5.72357 5.80016 5.98238 6.02920 6.08965 6.11401 6.18453 6.34651 6.45801 6.68695 6.75342 7.13920 7.28198 7.35708 7.46189 7.79516 8.16828 8.60134 9.01536 9.52855 11.01160 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028955 B = 0.003515 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.776366 B = 7963.017650 C = 8787.909031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.393 6.393 11 C 0.066 3.934 12 C 0.056 3.944 13 N -0.526 5.526 14 C 0.059 3.941 15 C -0.130 4.130 16 C -0.099 4.099 17 H 0.076 0.924 18 C -0.108 4.108 19 H 0.088 0.912 20 C -0.152 4.152 21 C 0.050 3.950 22 O -0.388 6.388 23 C 0.055 3.945 24 C 0.049 3.951 25 H 0.264 0.736 26 H 0.002 0.998 27 H 0.005 0.995 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.760 -17.807 4.199 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.313 6.313 11 C -0.012 4.012 12 C -0.072 4.072 13 N -0.251 5.251 14 C -0.068 4.068 15 C -0.168 4.168 16 C -0.119 4.119 17 H 0.094 0.906 18 C -0.127 4.127 19 H 0.107 0.893 20 C -0.190 4.190 21 C -0.026 4.026 22 O -0.308 6.308 23 C -0.021 4.021 24 C -0.079 4.079 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.641 -17.628 4.614 21.623 hybrid contribution 0.225 0.829 -0.768 1.152 sum 11.865 -16.799 3.846 20.923 Atomic orbital electron populations 1.69965 1.06109 1.27101 1.50602 1.24951 0.94955 0.99407 0.95219 0.86362 0.79691 0.82400 0.78185 1.20533 1.21097 1.19622 1.21040 0.93935 0.89399 1.50704 0.91661 1.20154 0.88794 0.83630 0.95245 1.87855 1.35306 1.12954 1.95168 1.22239 0.94308 0.85442 0.99258 1.22349 0.96288 0.98071 0.90510 1.63610 1.25091 1.01984 1.34400 1.23007 0.91221 0.92578 0.99997 1.22888 0.98576 0.94537 1.00800 1.22379 0.96038 0.95530 0.97921 0.90552 1.22723 0.95874 0.94402 0.99736 0.89339 1.23335 0.98166 0.96249 1.01229 1.23362 0.91309 0.88323 0.99629 1.88392 1.32797 1.14456 1.95146 1.23212 0.88854 0.88451 1.01629 1.22844 0.90414 0.93708 1.00964 0.92687 0.98015 0.97750 0.94373 0.93666 0.94335 0.90627 0.92733 0.88851 0.91023 0.90857 0.89800 0.90314 0.89969 0.92270 0.91098 0.91341 0.90895 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.79 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -14.94 9.43 -34.44 -0.32 -15.27 16 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.20 5.35 5.69 36.00 0.20 5.56 16 10 O -0.39 -9.22 7.73 -35.23 -0.27 -9.49 16 11 C 0.07 1.23 6.24 37.16 0.23 1.46 16 12 C 0.06 0.85 5.15 -3.82 -0.02 0.83 16 13 N -0.53 -7.93 5.16 -231.25 -1.19 -9.12 16 14 C 0.06 0.95 5.08 -2.29 -0.01 0.94 16 15 C -0.13 -1.60 6.19 -24.59 -0.15 -1.75 16 16 C -0.10 -1.04 2.28 -88.80 -0.20 -1.24 16 17 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 18 C -0.11 -0.97 2.33 -88.68 -0.21 -1.17 16 19 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.15 -1.17 6.22 -24.48 -0.15 -1.32 16 21 C 0.05 0.41 7.78 38.19 0.30 0.71 16 22 O -0.39 -4.33 11.36 -35.23 -0.40 -4.73 16 23 C 0.05 0.54 7.07 37.88 0.27 0.80 16 24 C 0.05 0.56 6.06 -2.84 -0.02 0.54 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.60 7.83 -51.93 -0.41 0.19 16 31 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 32 H 0.05 0.97 7.25 -51.93 -0.38 0.59 16 33 H 0.09 1.80 7.59 -51.93 -0.39 1.40 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.69 7.81 -51.93 -0.41 0.29 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 43 H 0.05 0.53 7.54 -51.93 -0.39 0.13 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -31.12 338.97 -9.05 -40.17 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.83 Total: -4.08 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.18 Total: -8.39 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.46 Total: -35.34 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.67 Total: -14.22 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.12 -9.05 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339050284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.120 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds