Wall clock time and date at job start Mon Mar 30 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48501 * 109.46889 * 270.00027 * 3 2 1 5 5 H 1.48495 * 109.46882 * 30.00078 * 3 2 1 6 6 H 1.48505 * 109.46816 * 150.00061 * 3 2 1 7 7 C 1.37883 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00226 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47513 * 180.02562 * 9 7 2 11 11 C 1.42900 * 114.00033 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46676 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47254 * 65.00090 * 12 11 10 14 14 C 1.47846 * 110.99547 * 290.12325 * 13 12 11 15 15 C 1.54915 * 104.79538 * 213.63497 * 14 13 12 16 16 C 1.55138 * 101.64918 * 37.06908 * 15 14 13 17 17 H 1.09005 * 110.70206 * 82.73348 * 16 15 14 18 18 C 1.53002 * 110.70343 * 205.96119 * 16 15 14 19 19 H 1.09000 * 110.74889 * 55.62676 * 18 16 15 20 20 C 1.55306 * 110.84665 * 179.31638 * 18 16 15 21 21 C 1.54949 * 100.94121 * 152.32608 * 20 18 16 22 22 O 1.43647 * 105.13450 * 323.55600 * 21 20 18 23 23 C 1.43233 * 109.97001 * 24.42801 * 22 21 20 24 24 C 1.47437 * 111.00223 * 169.27923 * 13 12 11 25 25 H 0.96998 * 119.99493 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47368 * 59.99972 * 9 7 2 27 27 H 1.08996 * 109.47071 * 300.00035 * 9 7 2 28 28 H 1.08994 * 109.47275 * 60.00074 * 11 10 9 29 29 H 1.08997 * 109.47097 * 299.99522 * 11 10 9 30 30 H 1.09002 * 109.47270 * 304.99810 * 12 11 10 31 31 H 1.09003 * 109.46878 * 184.99450 * 12 11 10 32 32 H 1.08995 * 110.38030 * 332.46412 * 14 13 12 33 33 H 1.09000 * 110.37255 * 94.81067 * 14 13 12 34 34 H 1.08995 * 110.99221 * 155.16374 * 15 14 13 35 35 H 1.09001 * 110.98790 * 278.98277 * 15 14 13 36 36 H 1.09002 * 111.12864 * 270.24640 * 20 18 16 37 37 H 1.09001 * 111.12413 * 34.40310 * 20 18 16 38 38 H 1.09003 * 110.30408 * 204.64176 * 21 20 18 39 39 H 1.08998 * 110.38981 * 82.51721 * 21 20 18 40 40 H 1.08998 * 109.82966 * 238.77153 * 23 22 21 41 41 H 1.09006 * 109.83256 * 117.80377 * 23 22 21 42 42 H 1.08998 * 109.89349 * 242.66131 * 24 13 12 43 43 H 1.08998 * 109.88725 * 3.69037 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1795 -3.5854 -0.0015 11 6 1.5648 -4.8754 -0.0031 12 6 2.6478 -5.9563 -0.0033 13 7 3.4070 -5.8891 1.2525 14 6 4.2411 -4.6695 1.3026 15 6 5.5099 -5.0899 2.0858 16 6 5.7250 -6.5401 1.5784 17 1 6.2540 -6.5404 0.6253 18 6 6.4802 -7.3705 2.6182 19 1 5.9619 -7.3529 3.5769 20 6 6.6824 -8.8278 2.1209 21 6 7.9790 -9.2184 2.8739 22 8 8.7757 -8.0233 2.8936 23 6 7.9332 -6.8716 2.7699 24 6 4.2843 -7.0644 1.4032 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 0.9457 -4.9818 -0.8938 29 1 0.9438 -4.9831 0.8861 30 1 3.3220 -5.7950 -0.8446 31 1 2.1818 -6.9375 -0.0941 32 1 4.5060 -4.3491 0.2950 33 1 3.7167 -3.8724 1.8297 34 1 6.3573 -4.4555 1.8259 35 1 5.3282 -5.0751 3.1604 36 1 5.8485 -9.4637 2.4184 37 1 6.8308 -8.8574 1.0414 38 1 8.5014 -10.0127 2.3407 39 1 7.7468 -9.5352 3.8907 40 1 8.2204 -6.2962 1.8898 41 1 8.0202 -6.2521 3.6626 42 1 3.9888 -7.6376 2.2820 43 1 4.2208 -7.6910 0.5135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339050284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:08 Heat of formation + Delta-G solvation = -121.405737 kcal Electronic energy + Delta-G solvation = -21029.854380 eV Core-core repulsion = 17880.574674 eV Total energy + Delta-G solvation = -3149.279706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93517 -39.60446 -38.24605 -35.17598 -34.56380 -32.34566 -30.50238 -29.93137 -28.99398 -27.85704 -24.57040 -23.66658 -23.36215 -22.61790 -21.49476 -20.93635 -18.62640 -17.69433 -17.44247 -17.36978 -16.91367 -16.52548 -16.19717 -15.68413 -15.50556 -14.99050 -14.88369 -14.40029 -14.20438 -13.99098 -13.76493 -13.45600 -13.19425 -13.02760 -12.99292 -12.79696 -12.52520 -12.42228 -12.32380 -12.17018 -11.82633 -11.71167 -11.55903 -11.48750 -11.32510 -11.21641 -10.85789 -10.47120 -10.19172 -9.21670 -8.32412 -6.44512 1.38985 1.41787 1.53783 2.33941 2.97342 3.01516 3.07384 3.23169 3.35810 3.61476 3.80681 3.88258 4.14311 4.21059 4.27590 4.33830 4.35519 4.40942 4.48511 4.54818 4.57337 4.67831 4.71084 4.77899 4.83879 4.85921 4.88892 4.94332 4.99902 5.00390 5.08538 5.12773 5.18812 5.26183 5.31864 5.42717 5.54653 5.96508 6.06949 6.07744 6.21791 6.54557 6.83001 7.27505 8.80117 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028955 B = 0.003515 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.776366 B = 7963.017650 C = 8787.909031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.212 3.788 10 O -0.399 6.399 11 C 0.055 3.945 12 C 0.065 3.935 13 N -0.541 5.541 14 C 0.062 3.938 15 C -0.123 4.123 16 C -0.087 4.087 17 H 0.077 0.923 18 C -0.101 4.101 19 H 0.092 0.908 20 C -0.146 4.146 21 C 0.044 3.956 22 O -0.413 6.413 23 C 0.052 3.948 24 C 0.050 3.950 25 H 0.270 0.730 26 H -0.018 1.018 27 H -0.020 1.020 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.111 0.889 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.983 -18.908 4.340 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.136 3.864 10 O -0.319 6.319 11 C -0.022 4.022 12 C -0.063 4.063 13 N -0.266 5.266 14 C -0.066 4.066 15 C -0.161 4.161 16 C -0.106 4.106 17 H 0.096 0.904 18 C -0.120 4.120 19 H 0.110 0.890 20 C -0.183 4.183 21 C -0.032 4.032 22 O -0.333 6.333 23 C -0.024 4.024 24 C -0.077 4.077 25 H 0.079 0.921 26 H 0.000 1.000 27 H -0.002 1.002 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.867 -18.765 4.756 23.244 hybrid contribution -0.200 1.082 -0.800 1.361 sum 12.667 -17.683 3.956 22.108 Atomic orbital electron populations 1.70077 1.07810 1.28589 1.50660 1.25971 0.95938 1.03417 0.94011 0.85198 0.78416 0.77086 0.78813 1.19310 1.20004 1.18771 1.21357 0.94007 0.90751 1.51956 0.92000 1.19749 0.88648 0.84923 0.93038 1.87849 1.34857 1.14066 1.95116 1.22577 0.96000 0.84264 0.99354 1.22325 0.95336 0.98016 0.90662 1.63530 1.26043 1.02767 1.34266 1.22784 0.92729 0.92399 0.98701 1.22825 0.96737 0.96090 1.00440 1.22270 0.95802 0.94142 0.98398 0.90424 1.22635 0.95038 0.95024 0.99337 0.88973 1.23323 0.98473 0.95275 1.01226 1.23554 0.91446 0.87679 1.00522 1.88368 1.34095 1.15548 1.95282 1.23236 0.89230 0.88340 1.01590 1.22924 0.90105 0.92370 1.02335 0.92097 1.00018 1.00189 0.93528 0.94266 0.94487 0.87077 0.94959 0.93013 0.90442 0.90492 0.88076 0.90181 0.88803 0.91388 0.91446 0.91228 0.89592 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 2 C 0.00 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -32.58 9.43 25.60 0.24 -32.34 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.09 5.69 71.23 0.41 12.49 16 10 O -0.40 -19.48 7.73 -148.98 -1.15 -20.64 16 11 C 0.06 2.11 6.24 71.98 0.45 2.56 16 12 C 0.06 1.89 5.15 86.30 0.44 2.34 16 13 N -0.54 -15.82 5.16 -885.53 -4.57 -20.38 16 14 C 0.06 2.03 5.08 86.78 0.44 2.47 16 15 C -0.12 -2.95 6.19 31.98 0.20 -2.75 16 16 C -0.09 -1.64 2.28 -9.61 -0.02 -1.66 16 17 H 0.08 1.49 8.13 -2.38 -0.02 1.47 16 18 C -0.10 -1.56 2.33 -9.53 -0.02 -1.59 16 19 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 20 C -0.15 -1.78 6.22 32.05 0.20 -1.58 16 21 C 0.04 0.61 7.78 72.65 0.56 1.18 16 22 O -0.41 -8.53 11.36 -148.98 -1.69 -10.22 16 23 C 0.05 0.94 7.07 72.45 0.51 1.45 16 24 C 0.05 1.02 6.06 86.65 0.53 1.54 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 27 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.10 7.83 -2.39 -0.02 1.09 16 31 H 0.11 2.48 8.01 -2.39 -0.02 2.47 16 32 H 0.03 1.18 7.25 -2.39 -0.02 1.17 16 33 H 0.05 2.11 7.59 -2.39 -0.02 2.09 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.79 8.05 -2.39 -0.02 1.77 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.99 8.04 -2.39 -0.02 0.97 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 1.23 7.81 -2.39 -0.02 1.22 16 41 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.09 1.58 7.82 -2.39 -0.02 1.56 16 43 H 0.07 1.17 7.54 -2.39 -0.02 1.15 16 Total: -1.00 -68.53 338.97 0.25 -68.28 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.95 Total: 7.85 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.40 Total: -15.14 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -4.28 Total: -76.86 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -2.84 Total: -30.86 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.53 0.25 -68.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339050284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.128 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds