Wall clock time and date at job start Mon Mar 30 2020 07:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00172 * 2 1 4 4 H 1.09003 * 110.66756 * 31.78896 * 3 2 1 5 5 C 1.54879 * 110.76053 * 268.54682 * 3 2 1 6 6 C 1.54261 * 104.19784 * 203.74259 * 5 3 2 7 7 C 1.53875 * 106.59650 * 23.60951 * 6 5 3 8 8 H 1.08995 * 110.03191 * 240.66243 * 7 6 5 9 9 C 1.50703 * 110.03001 * 119.28808 * 7 6 5 10 10 O 1.21280 * 119.99672 * 241.45453 * 9 7 6 11 11 N 1.34776 * 120.00527 * 61.45163 * 9 7 6 12 12 C 1.46495 * 120.00376 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47445 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46976 * 59.99974 * 13 12 11 15 15 C 1.53001 * 109.47241 * 300.00226 * 13 12 11 16 16 C 1.50693 * 109.47549 * 180.02562 * 13 12 11 17 17 H 1.08009 * 119.99875 * 4.71484 * 16 13 12 18 18 C 1.37874 * 120.00271 * 184.71922 * 16 13 12 19 19 N 1.31520 * 119.99945 * 152.00065 * 18 16 13 20 20 Si 1.86797 * 119.99928 * 331.99626 * 18 16 13 21 21 H 1.48506 * 109.47309 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47413 * 300.00255 * 20 18 16 23 23 H 1.48500 * 109.47152 * 59.99887 * 20 18 16 24 24 C 1.54262 * 106.59797 * 0.02562 * 7 6 5 25 25 H 1.09001 * 109.47009 * 59.99367 * 1 2 3 26 26 H 1.09003 * 109.47093 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47071 * 299.99805 * 1 2 3 28 28 H 1.09005 * 110.48515 * 85.06323 * 5 3 2 29 29 H 1.09006 * 110.48889 * 322.42312 * 5 3 2 30 30 H 1.09005 * 110.03391 * 264.32807 * 6 5 3 31 31 H 1.08999 * 110.07550 * 142.91934 * 6 5 3 32 32 H 0.96999 * 119.99572 * 0.02562 * 11 9 7 33 33 H 1.09002 * 109.47096 * 59.99767 * 12 11 9 34 34 H 1.09005 * 109.47243 * 300.00358 * 12 11 9 35 35 H 1.08999 * 109.47054 * 173.26664 * 14 13 12 36 36 H 1.09002 * 109.47161 * 293.26646 * 14 13 12 37 37 H 1.09003 * 109.46865 * 53.26575 * 14 13 12 38 38 H 1.08996 * 109.46921 * 292.46075 * 15 13 12 39 39 H 1.09007 * 109.46930 * 52.45979 * 15 13 12 40 40 H 1.08995 * 109.47314 * 172.45809 * 15 13 12 41 41 H 0.96991 * 120.00329 * 354.88398 * 19 18 16 42 42 H 1.08998 * 110.48492 * 95.07077 * 24 7 6 43 43 H 1.09007 * 110.48434 * 217.70523 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3748 2.0095 0.5373 5 6 2.2672 1.7920 -1.4478 6 6 3.3892 2.8404 -1.3011 7 6 4.1316 2.5097 0.0055 8 1 4.0638 3.3500 0.6964 9 6 5.5767 2.1976 -0.2867 10 8 6.0268 1.1036 -0.0194 11 7 6.3690 3.1341 -0.8451 12 6 7.7736 2.8304 -1.1297 13 6 8.4429 4.0545 -1.7577 14 6 8.3628 5.2341 -0.7864 15 6 7.7255 4.4164 -3.0597 16 6 9.8876 3.7420 -2.0510 17 1 10.2692 2.7454 -1.8843 18 6 10.7225 4.7282 -2.5320 19 7 12.0130 4.6761 -2.2838 20 14 10.0206 6.1383 -3.5361 21 1 11.1173 7.0580 -3.9322 22 1 9.3628 5.5997 -4.7537 23 1 9.0236 6.8781 -2.7212 24 6 3.4352 1.2716 0.6068 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.3686 2.2502 -1.8613 29 1 2.5979 0.9644 -2.0754 30 1 2.9603 3.8409 -1.2439 31 1 4.0743 2.7760 -2.1464 32 1 6.0090 4.0092 -1.0586 33 1 7.8307 1.9904 -1.8219 34 1 8.2846 2.5722 -0.2021 35 1 8.9416 6.0693 -1.1807 36 1 7.3224 5.5369 -0.6677 37 1 8.7672 4.9362 0.1810 38 1 7.8959 3.6330 -3.7982 39 1 6.6561 4.5114 -2.8709 40 1 8.1132 5.3624 -3.4374 41 1 12.3675 3.9863 -1.7015 42 1 3.9549 0.3603 0.3110 43 1 3.3888 1.3499 1.6931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597761622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:42 Heat of formation + Delta-G solvation = -94.037368 kcal Electronic energy + Delta-G solvation = -21378.429811 eV Core-core repulsion = 18230.336886 eV Total energy + Delta-G solvation = -3148.092924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10009 -38.50459 -36.77791 -35.73233 -33.34416 -31.49709 -29.16020 -28.83304 -26.51187 -26.34867 -25.57825 -24.33690 -21.78761 -20.93259 -19.54501 -19.07137 -17.56065 -16.80160 -16.37051 -16.17688 -15.33117 -15.10776 -14.91572 -14.63860 -14.24760 -13.60739 -13.52086 -13.05480 -12.77936 -12.69969 -12.57947 -12.05596 -11.89111 -11.83208 -11.70261 -11.56986 -11.40377 -11.21300 -10.86600 -10.76019 -10.57056 -10.20118 -10.09603 -9.96447 -9.75552 -9.44886 -9.05061 -8.91274 -8.50094 -8.15105 -6.54082 -4.10275 2.96081 3.31264 3.38225 3.39800 3.60526 3.76423 4.35429 4.40028 4.45071 4.71807 4.91594 5.02494 5.08169 5.12227 5.16084 5.28952 5.32652 5.35544 5.41414 5.51781 5.69781 5.75964 5.82776 5.97417 6.04100 6.05788 6.09837 6.21232 6.36650 6.48424 6.54177 6.63606 6.71700 6.79772 6.98577 7.03065 7.25397 7.46652 7.94618 8.11904 8.33884 8.61302 8.85179 9.53811 10.82834 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043148 B = 0.003808 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.770165 B = 7351.150963 C = 7665.632031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.081 3.919 4 H 0.069 0.931 5 C -0.145 4.145 6 C -0.115 4.115 7 C -0.114 4.114 8 H 0.099 0.901 9 C 0.511 3.489 10 O -0.546 6.546 11 N -0.721 5.721 12 C 0.142 3.858 13 C 0.035 3.965 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.608 4.608 17 H 0.060 0.940 18 C 0.043 3.957 19 N -0.890 5.890 20 Si 1.050 2.950 21 H -0.299 1.299 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.105 4.105 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.396 0.604 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.028 0.972 40 H 0.041 0.959 41 H 0.272 0.728 42 H 0.098 0.902 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.546 -1.226 3.421 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.024 3.976 4 H 0.087 0.913 5 C -0.183 4.183 6 C -0.153 4.153 7 C -0.135 4.135 8 H 0.117 0.883 9 C 0.296 3.704 10 O -0.424 6.424 11 N -0.372 5.372 12 C 0.020 3.980 13 C 0.033 3.967 14 C -0.199 4.199 15 C -0.206 4.206 16 C -0.645 4.645 17 H 0.078 0.922 18 C -0.164 4.164 19 N -0.521 5.521 20 Si 0.882 3.118 21 H -0.227 1.227 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.143 4.143 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.231 0.769 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.621 -0.845 2.755 21.812 hybrid contribution -0.800 -0.626 0.695 1.231 sum -22.421 -1.471 3.450 22.733 Atomic orbital electron populations 1.22766 0.81405 1.02643 0.99790 1.87948 1.19339 1.27593 1.94886 1.23204 0.94685 0.84245 0.95514 0.91322 1.22834 0.98457 0.99260 0.97726 1.22072 0.97351 0.99220 0.96694 1.21873 0.92791 1.00033 0.98838 0.88274 1.20403 0.87705 0.84741 0.77533 1.90672 1.75753 1.23137 1.52809 1.46330 1.12607 1.15962 1.62319 1.21503 0.77844 0.98984 0.99698 1.18648 0.96237 0.90811 0.91003 1.22225 0.97764 0.99762 1.00145 1.22366 0.97318 1.00575 1.00374 1.21657 0.92677 0.99028 1.51131 0.92186 1.25667 0.94418 1.00041 0.96284 1.70834 1.14435 1.32733 1.34120 0.84245 0.74198 0.76338 0.76972 1.22718 1.21525 1.20459 1.22283 0.93068 0.99047 0.99854 0.94159 0.89751 0.94150 0.91438 0.90342 0.90703 0.90567 0.76900 0.92389 0.92284 0.92532 0.96028 0.93637 0.92775 0.95343 0.94068 0.91811 0.88358 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.88 101.05 1.10 1.33 16 2 O -0.38 -4.33 10.49 -35.23 -0.37 -4.70 16 3 C 0.08 0.83 3.35 -24.73 -0.08 0.75 16 4 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 5 C -0.14 -1.41 6.55 -25.08 -0.16 -1.58 16 6 C -0.12 -1.15 6.36 -25.62 -0.16 -1.31 16 7 C -0.11 -1.34 3.30 -90.65 -0.30 -1.63 16 8 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 9 C 0.51 8.37 6.93 -10.98 -0.08 8.29 16 10 O -0.55 -11.22 15.41 5.56 0.09 -11.13 16 11 N -0.72 -11.91 4.77 -60.29 -0.29 -12.20 16 12 C 0.14 2.93 4.50 -4.04 -0.02 2.91 16 13 C 0.03 0.76 0.50 -155.66 -0.08 0.68 16 14 C -0.14 -2.93 7.88 37.16 0.29 -2.63 16 15 C -0.15 -3.01 7.44 37.16 0.28 -2.73 16 16 C -0.61 -16.42 8.42 -34.44 -0.29 -16.71 16 17 H 0.06 1.77 7.99 -52.48 -0.42 1.35 16 18 C 0.04 1.20 5.08 -17.82 -0.09 1.11 16 19 N -0.89 -26.62 13.70 55.43 0.76 -25.86 16 20 Si 1.05 24.73 23.32 -169.99 -3.96 20.77 16 21 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -6.45 6.80 56.52 0.38 -6.06 16 23 H -0.28 -5.92 5.62 56.52 0.32 -5.60 16 24 C -0.10 -1.27 5.87 -25.06 -0.15 -1.42 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.85 7.59 -51.93 -0.39 0.45 16 32 H 0.40 5.61 6.18 -40.82 -0.25 5.36 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.24 4.43 -51.93 -0.23 1.01 16 36 H 0.02 0.36 7.06 -51.93 -0.37 -0.01 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.12 8.13 -51.93 -0.42 0.69 16 39 H 0.03 0.46 6.68 -51.92 -0.35 0.12 16 40 H 0.04 0.85 2.88 -51.93 -0.15 0.70 16 41 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 42 H 0.10 1.50 6.89 -51.93 -0.36 1.14 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -31.34 328.27 -5.82 -37.16 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.25 Total: 3.94 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 0.26 Total: -12.93 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.47 Total: -38.05 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.28 Total: -15.84 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -3.96 Total: 20.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.34 -5.82 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.876 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds