Wall clock time and date at job start Mon Mar 30 2020 07:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00172 * 2 1 4 4 H 1.09003 * 110.66756 * 31.78896 * 3 2 1 5 5 C 1.54879 * 110.76053 * 268.54682 * 3 2 1 6 6 C 1.54261 * 104.19784 * 203.74259 * 5 3 2 7 7 C 1.53875 * 106.59650 * 23.60951 * 6 5 3 8 8 H 1.08995 * 110.03191 * 240.66243 * 7 6 5 9 9 C 1.50703 * 110.03001 * 119.28808 * 7 6 5 10 10 O 1.21280 * 119.99672 * 241.45453 * 9 7 6 11 11 N 1.34776 * 120.00527 * 61.45163 * 9 7 6 12 12 C 1.46495 * 120.00376 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47445 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46976 * 59.99974 * 13 12 11 15 15 C 1.53001 * 109.47241 * 300.00226 * 13 12 11 16 16 C 1.50693 * 109.47549 * 180.02562 * 13 12 11 17 17 H 1.08009 * 119.99875 * 4.71484 * 16 13 12 18 18 C 1.37874 * 120.00271 * 184.71922 * 16 13 12 19 19 N 1.31520 * 119.99945 * 152.00065 * 18 16 13 20 20 Si 1.86797 * 119.99928 * 331.99626 * 18 16 13 21 21 H 1.48506 * 109.47309 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47413 * 300.00255 * 20 18 16 23 23 H 1.48500 * 109.47152 * 59.99887 * 20 18 16 24 24 C 1.54262 * 106.59797 * 0.02562 * 7 6 5 25 25 H 1.09001 * 109.47009 * 59.99367 * 1 2 3 26 26 H 1.09003 * 109.47093 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47071 * 299.99805 * 1 2 3 28 28 H 1.09005 * 110.48515 * 85.06323 * 5 3 2 29 29 H 1.09006 * 110.48889 * 322.42312 * 5 3 2 30 30 H 1.09005 * 110.03391 * 264.32807 * 6 5 3 31 31 H 1.08999 * 110.07550 * 142.91934 * 6 5 3 32 32 H 0.96999 * 119.99572 * 0.02562 * 11 9 7 33 33 H 1.09002 * 109.47096 * 59.99767 * 12 11 9 34 34 H 1.09005 * 109.47243 * 300.00358 * 12 11 9 35 35 H 1.08999 * 109.47054 * 173.26664 * 14 13 12 36 36 H 1.09002 * 109.47161 * 293.26646 * 14 13 12 37 37 H 1.09003 * 109.46865 * 53.26575 * 14 13 12 38 38 H 1.08996 * 109.46921 * 292.46075 * 15 13 12 39 39 H 1.09007 * 109.46930 * 52.45979 * 15 13 12 40 40 H 1.08995 * 109.47314 * 172.45809 * 15 13 12 41 41 H 0.96991 * 120.00329 * 354.88398 * 19 18 16 42 42 H 1.08998 * 110.48492 * 95.07077 * 24 7 6 43 43 H 1.09007 * 110.48434 * 217.70523 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3748 2.0095 0.5373 5 6 2.2672 1.7920 -1.4478 6 6 3.3892 2.8404 -1.3011 7 6 4.1316 2.5097 0.0055 8 1 4.0638 3.3500 0.6964 9 6 5.5767 2.1976 -0.2867 10 8 6.0268 1.1036 -0.0194 11 7 6.3690 3.1341 -0.8451 12 6 7.7736 2.8304 -1.1297 13 6 8.4429 4.0545 -1.7577 14 6 8.3628 5.2341 -0.7864 15 6 7.7255 4.4164 -3.0597 16 6 9.8876 3.7420 -2.0510 17 1 10.2692 2.7454 -1.8843 18 6 10.7225 4.7282 -2.5320 19 7 12.0130 4.6761 -2.2838 20 14 10.0206 6.1383 -3.5361 21 1 11.1173 7.0580 -3.9322 22 1 9.3628 5.5997 -4.7537 23 1 9.0236 6.8781 -2.7212 24 6 3.4352 1.2716 0.6068 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.3686 2.2502 -1.8613 29 1 2.5979 0.9644 -2.0754 30 1 2.9603 3.8409 -1.2439 31 1 4.0743 2.7760 -2.1464 32 1 6.0090 4.0092 -1.0586 33 1 7.8307 1.9904 -1.8219 34 1 8.2846 2.5722 -0.2021 35 1 8.9416 6.0693 -1.1807 36 1 7.3224 5.5369 -0.6677 37 1 8.7672 4.9362 0.1810 38 1 7.8959 3.6330 -3.7982 39 1 6.6561 4.5114 -2.8709 40 1 8.1132 5.3624 -3.4374 41 1 12.3675 3.9863 -1.7015 42 1 3.9549 0.3603 0.3110 43 1 3.3888 1.3499 1.6931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597761622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:41 Heat of formation + Delta-G solvation = -117.023515 kcal Electronic energy + Delta-G solvation = -21379.426565 eV Core-core repulsion = 18230.336886 eV Total energy + Delta-G solvation = -3149.089679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30304 -39.51073 -38.36631 -36.68900 -35.08664 -33.40188 -30.10849 -29.65282 -28.00223 -27.51945 -26.84461 -26.26194 -22.97752 -21.71245 -21.01233 -20.65090 -18.96853 -18.33949 -17.37711 -17.15223 -16.74032 -16.41991 -16.10154 -15.75037 -15.45771 -14.98454 -14.59599 -14.52058 -14.33063 -14.21081 -14.01034 -13.56521 -13.47774 -13.02226 -12.67527 -12.46956 -12.40247 -12.23519 -12.18430 -12.03497 -11.87907 -11.75752 -11.70484 -11.49065 -11.00542 -10.78769 -10.66260 -10.46333 -10.29436 -10.02910 -8.76903 -6.32912 1.44253 1.53889 1.66334 1.75801 2.23689 2.50450 2.89436 2.99967 3.48456 3.54672 3.95079 4.06055 4.15175 4.27329 4.28156 4.41582 4.44286 4.47890 4.52978 4.55655 4.60701 4.70313 4.79882 4.81856 4.85093 4.88826 4.92159 4.94502 5.05973 5.06857 5.15149 5.21849 5.22239 5.30759 5.46159 5.55045 5.78763 6.02381 6.16314 6.36166 6.55991 6.64593 7.31260 7.40794 8.58584 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043148 B = 0.003808 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.770165 B = 7351.150963 C = 7665.632031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.085 3.915 4 H 0.099 0.901 5 C -0.144 4.144 6 C -0.111 4.111 7 C -0.102 4.102 8 H 0.135 0.865 9 C 0.507 3.493 10 O -0.596 6.596 11 N -0.708 5.708 12 C 0.158 3.842 13 C 0.032 3.968 14 C -0.139 4.139 15 C -0.148 4.148 16 C -0.615 4.615 17 H 0.011 0.989 18 C -0.007 4.007 19 N -0.928 5.928 20 Si 1.087 2.913 21 H -0.312 1.312 22 H -0.266 1.266 23 H -0.230 1.230 24 C -0.111 4.111 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.954 1.689 3.142 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.028 3.972 4 H 0.117 0.883 5 C -0.181 4.181 6 C -0.149 4.149 7 C -0.124 4.124 8 H 0.153 0.847 9 C 0.295 3.705 10 O -0.477 6.477 11 N -0.360 5.360 12 C 0.033 3.967 13 C 0.031 3.969 14 C -0.196 4.196 15 C -0.205 4.205 16 C -0.653 4.653 17 H 0.029 0.971 18 C -0.206 4.206 19 N -0.561 5.561 20 Si 0.912 3.088 21 H -0.241 1.241 22 H -0.193 1.193 23 H -0.155 1.155 24 C -0.149 4.149 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.252 0.748 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.086 2.074 2.486 26.286 hybrid contribution 0.593 -1.726 0.853 2.015 sum -25.492 0.347 3.339 25.712 Atomic orbital electron populations 1.22961 0.79511 1.03584 1.01093 1.87912 1.21537 1.28617 1.95079 1.23248 0.93675 0.84487 0.95836 0.88308 1.22831 0.99511 0.98621 0.97183 1.22132 0.96858 1.01205 0.94710 1.21929 0.88715 1.00874 1.00841 0.84699 1.21364 0.89545 0.83649 0.75973 1.90664 1.77088 1.25347 1.54591 1.46057 1.10631 1.16971 1.62371 1.20984 0.80309 0.97780 0.97583 1.18588 0.93334 0.91957 0.93028 1.22139 1.00626 0.98251 0.98625 1.22272 0.99884 1.00132 0.98214 1.21907 0.96019 0.96849 1.50490 0.97073 1.27149 0.93903 1.02905 0.96688 1.70971 1.16052 1.33272 1.35836 0.83844 0.74547 0.73583 0.76835 1.24099 1.19251 1.15503 1.22286 0.94476 0.97490 1.00616 0.92914 0.89213 0.92649 0.88757 0.92900 0.86814 0.91838 0.74827 0.94878 0.95171 0.93460 0.91161 0.95050 0.94007 0.90757 0.93762 0.93694 0.92532 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.88 113.37 1.23 1.55 16 2 O -0.41 -8.80 10.49 -148.98 -1.56 -10.36 16 3 C 0.09 1.49 3.35 31.89 0.11 1.60 16 4 H 0.10 1.15 7.88 -2.39 -0.02 1.14 16 5 C -0.14 -2.34 6.55 31.66 0.21 -2.13 16 6 C -0.11 -1.72 6.36 31.32 0.20 -1.52 16 7 C -0.10 -2.08 3.30 -10.82 -0.04 -2.11 16 8 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 9 C 0.51 16.03 6.93 87.66 0.61 16.64 16 10 O -0.60 -25.28 15.41 -3.03 -0.05 -25.33 16 11 N -0.71 -21.88 4.77 -463.06 -2.21 -24.09 16 12 C 0.16 6.58 4.50 86.38 0.39 6.97 16 13 C 0.03 1.40 0.50 -52.93 -0.03 1.37 16 14 C -0.14 -5.35 7.88 71.98 0.57 -4.78 16 15 C -0.15 -5.46 7.44 71.98 0.54 -4.92 16 16 C -0.62 -34.42 8.42 25.60 0.22 -34.20 16 17 H 0.01 0.70 7.99 -2.91 -0.02 0.68 16 18 C -0.01 -0.37 5.08 84.65 0.43 0.06 16 19 N -0.93 -57.86 13.70 21.45 0.29 -57.56 16 20 Si 1.09 48.23 23.32 68.60 1.60 49.83 16 21 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.27 -10.87 6.80 99.48 0.68 -10.20 16 23 H -0.23 -8.53 5.62 99.48 0.56 -7.97 16 24 C -0.11 -2.52 5.87 31.67 0.19 -2.34 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.53 8.11 -2.39 -0.02 0.51 16 28 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 1.18 7.59 -2.39 -0.02 1.16 16 32 H 0.41 9.74 6.18 -92.71 -0.57 9.17 16 33 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.05 1.91 4.43 -2.39 -0.01 1.90 16 36 H 0.07 2.01 7.06 -2.39 -0.02 1.99 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 39 H 0.07 2.05 6.68 -2.38 -0.02 2.03 16 40 H 0.04 1.62 2.88 -2.39 -0.01 1.61 16 41 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 42 H 0.06 1.78 6.89 -2.39 -0.02 1.76 16 43 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -75.06 328.27 2.89 -72.16 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.20 Total: 19.18 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.62 Total: -23.82 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -1.91 Total: -81.65 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.61 Total: -35.69 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.60 Total: 49.83 kcal Total: -75.06 2.89 -72.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.859 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds